jgi.p|Nanoce1779_2|576850, mRNA_297 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576850
Unique Name	mRNA_297
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2334
Alignment location	scaffold_3:730768..733213 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576936
Track	FilteredModels2
ProteinId	576850

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:730768..733213 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576850	gene_297	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576850	mRNA_297-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_297	CDS_297	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:730768..733213+
coding sequence from alignment at scaffold_3:730768..733213+

mRNA sequence

>mRNA_297 ID=mRNA_297|Name=jgi.p|Nanoce1779_2|576850|organism=Nannochloropsis oceanica|type=mRNA|length=2334bp
CAACAGGAAGCTAAGCAAGCTCCGCTTTTATTTGGGTGTTGCCTTCCTGA
CGCAATGCCGCGCTCACGGTCTGTCTCTCGATCACCTCCCGCCAGAAGGA
AGGGTACAACGAGGCGTCGCTCATTTAGTGACGATGATAGCCGCAGTCCA
CCACCGAAGCGAACTTTTAGGCGGAGGTCACGTTCTCGATCTCGGTCTGG
TTACTCGCGCTCTGCAAGACGCGACCGGAGCCGCAGTGGGGACCGTGACA
ATCGTCCCAACCACTACAGCCGCTCGCCCTCTCCATCCCATCGCTGGCGC
TATTATTCCCGTTCCCGCTCTTCTCCTCGCCATCGCGATGATCAACGATC
TGGAGCAGTAGGAAGGAGAGGAGAAGATTACGGTCATGGAGGAAGTGGGG
GAGGAAGGGGGGCAGGAGCAGGAGGAGGAGGTGAAGGGCCGGGAACGCTG
CCAACTGTAGGCAAAATATATGGAGGGGAGGTAGTCAAGACTGAGTCGTA
TGGAGCTTTTGTGCGCATTCCCGGCTTTCAACGTCAGGGACTCGTACACA
TCTCTCAATTACGCGAGGGACGAACGGAGAGAGTGGATGACGTGGTAGTG
ACAGGCCATAAGGTCTTTGTCAAGGTGGTGGAGGTGAAGGAGCAAGGGCC
TGGCGAAGCATCCAAGGTCAGTTTATCGATGCGCTATGCCGACCAAAAAA
CAGGGGAGGACCTGGACCCGCACAACGAGAAATTTGAGAGGGACCAAGCT
CGAGGGGGAGGTGGACGGGGAGGAGGAGGGTTGCAGCCACGCGGTAAGAT
TGAGTTGGGTGCGGTGATAAATAATAAGTGTAGCAAGTGTGGGGTTATGG
GACATATGCCGTTTGAATGTCGGGGGGTGGTGGAAGGGAAAAGCTATGGA
TTGATTGGGGATGACGAGTTTTCGGCCTTGACCCGACAGCTTGCCGCGGC
CCCACCTCCTCGCCCACTTCCCCCTTCCGCTTCTTATGGTGGTAATGGTG
ATGGCTTTGGTGGTGGAGGAGCGGCAGGTCGAGGACGCGGACGGGCACTC
TTGACACCTGCGTGGATGACAAAACAGGGTTTGTCGCTTGACGACGCTAC
TCCTGCACGGGCCTCGTCTCCTCCTCCTCCCTCGAGCAGCAGCAGGCGTT
CTCGTTTCACGGACGCACCGGCACCGGCACCGCCGCCCCCACCTCTTTCT
TCTTCATCTTCTTCTTATGACCGGCGTGGTGATCGGGGGGGTTTGAATGG
GCACGGTGGTGTCGTCAGTGGAGGTGTTGGGAGTGGCGGTGGTAGTACGG
CTGCGCTCATGGCCGGTCGCGGTCGGGGGCGTGCCTTGACGCTCCCTGCG
TGGATGACTGCTGGTGGTGGTGATGGTAGCGGTCCTGTTGCTTTGGAGGA
AGGCGGGTTGAACCAGCGCGGAGTGAAGGATGCCTCGGCTTCGCGGACTA
AGACGAAGACGTCGAAGCGAAGAAGCCAGAGCAGGGGTTATGATAGCGGG
TCCAGTGATCGAAGTGATTCGAGATCGCGGGGCGGACGCAAGAAGAAGGA
GAAAAAGAAGAAGCACCTCAAGGACAAGGAAAGGGAGAAGGAAAAGAAGA
AGGGGGAGAAGAAGAAGAAGCACAAGCACCATCGGGACAGCCGCAGTCGG
AGCCGTGGCAGGCGTCGTTCGCTCTCTCCGGCACCGAAGTTTCGTAGTGC
CAGTGAGGCACGTCGCATTCTGAAGGCGTACGAAGAGAAGCATGGGCGCA
AATAGAGCTTTGGTTGAGTGTTCATGGAGAAAGGAGTGCGTCCCTCCCAC
CATCATTTCCTCCCTTCCTCCCCCTGGCAAGCATACGTCGTGCAGGCCAT
GAAAAGCCTGAAAAGAAAAAAAATGGTGCCAGGAAGCAAAGAATAAACAT
GTAGTGTGGGGCCTGCACATCCCAAATCCTTGAGATCGGGTCCACGAATT
ATTTTAAGTGTGATTATCCCCTTCTCCTACCTGGGAAAGCTCGGATCTGA
CGATGCAATGTAAATAGAAAGTTCCTCTCCTTAGTCAAGGGGGCATATTA
TTCGATCGTACCTAATCATCATCTAGTGTTCGTCCTAGTCTTGTCCTTGC
CTGTAGCCTGTACTTGTATGTCTATAGCTTACCGGGAGTACTGGACTGAT
ACCAAAGAACCTATGACATTCCGTAGTATGACCATATAAGCTTGACCACC
CTTGCCTGGGTTTAGACGACTATTACATTGGTGGTGACGTTTTATAATTT
TATTTCTCTACGACTAAGTCGTGGAAATAAATTAATGTTAACCTCTGAAC
GTAAATCTAAGACAAGCAAATGTTAAAGAACGGC

protein sequence of jgi.p|Nanoce1779_2|576850

>mRNA_297-protein ID=mRNA_297-protein|Name=jgi.p|Nanoce1779_2|576850|organism=Nannochloropsis oceanica|type=polypeptide|length=567bp
MPRSRSVSRSPPARRKGTTRRRSFSDDDSRSPPPKRTFRRRSRSRSRSGY
SRSARRDRSRSGDRDNRPNHYSRSPSPSHRWRYYSRSRSSPRHRDDQRSG
AVGRRGEDYGHGGSGGGRGAGAGGGGEGPGTLPTVGKIYGGEVVKTESYG
AFVRIPGFQRQGLVHISQLREGRTERVDDVVVTGHKVFVKVVEVKEQGPG
EASKVSLSMRYADQKTGEDLDPHNEKFERDQARGGGGRGGGGLQPRGKIE
LGAVINNKCSKCGVMGHMPFECRGVVEGKSYGLIGDDEFSALTRQLAAAP
PPRPLPPSASYGGNGDGFGGGGAAGRGRGRALLTPAWMTKQGLSLDDATP
ARASSPPPPSSSSRRSRFTDAPAPAPPPPPLSSSSSSYDRRGDRGGLNGH
GGVVSGGVGSGGGSTAALMAGRGRGRALTLPAWMTAGGGDGSGPVALEEG
GLNQRGVKDASASRTKTKTSKRRSQSRGYDSGSSDRSDSRSRGGRKKKEK
KKKHLKDKEREKEKKKGEKKKKHKHHRDSRSRSRGRRRSLSPAPKFRSAS
EARRILKAYEEKHGRK*

mRNA from alignment at scaffold_3:730768..733213+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_297 ID=mRNA_297|Name=jgi.p|Nanoce1779_2|576850|organism=Nannochloropsis oceanica|type=mRNA|length=2446bp|location=Sequence derived from alignment at scaffold_3:730768..733213+ (Nannochloropsis oceanica)
CAACAGGAAGCTAAGCAAGCTCCGCTTTTATTTGGGTGTTGCCTTCCTGA
CGCAATGGTAAGTATAGCTAGCATCTCGCATCCCTCTCCCTCGAAAATCG
ATACGTTCCTCAGCATCATCACAAACCACGAGTCTCACGCCCGCCTACCT
GCCAACCACCACGTCACAGCCGCGCTCACGGTCTGTCTCTCGATCACCTC
CCGCCAGAAGGAAGGGTACAACGAGGCGTCGCTCATTTAGTGACGATGAT
AGCCGCAGTCCACCACCGAAGCGAACTTTTAGGCGGAGGTCACGTTCTCG
ATCTCGGTCTGGTTACTCGCGCTCTGCAAGACGCGACCGGAGCCGCAGTG
GGGACCGTGACAATCGTCCCAACCACTACAGCCGCTCGCCCTCTCCATCC
CATCGCTGGCGCTATTATTCCCGTTCCCGCTCTTCTCCTCGCCATCGCGA
TGATCAACGATCTGGAGCAGTAGGAAGGAGAGGAGAAGATTACGGTCATG
GAGGAAGTGGGGGAGGAAGGGGGGCAGGAGCAGGAGGAGGAGGTGAAGGG
CCGGGAACGCTGCCAACTGTAGGCAAAATATATGGAGGGGAGGTAGTCAA
GACTGAGTCGTATGGAGCTTTTGTGCGCATTCCCGGCTTTCAACGTCAGG
GACTCGTACACATCTCTCAATTACGCGAGGGACGAACGGAGAGAGTGGAT
GACGTGGTAGTGACAGGCCATAAGGTCTTTGTCAAGGTGGTGGAGGTGAA
GGAGCAAGGGCCTGGCGAAGCATCCAAGGTCAGTTTATCGATGCGCTATG
CCGACCAAAAAACAGGGGAGGACCTGGACCCGCACAACGAGAAATTTGAG
AGGGACCAAGCTCGAGGGGGAGGTGGACGGGGAGGAGGAGGGTTGCAGCC
ACGCGGTAAGATTGAGTTGGGTGCGGTGATAAATAATAAGTGTAGCAAGT
GTGGGGTTATGGGACATATGCCGTTTGAATGTCGGGGGGTGGTGGAAGGG
AAAAGCTATGGATTGATTGGGGATGACGAGTTTTCGGCCTTGACCCGACA
GCTTGCCGCGGCCCCACCTCCTCGCCCACTTCCCCCTTCCGCTTCTTATG
GTGGTAATGGTGATGGCTTTGGTGGTGGAGGAGCGGCAGGTCGAGGACGC
GGACGGGCACTCTTGACACCTGCGTGGATGACAAAACAGGGTTTGTCGCT
TGACGACGCTACTCCTGCACGGGCCTCGTCTCCTCCTCCTCCCTCGAGCA
GCAGCAGGCGTTCTCGTTTCACGGACGCACCGGCACCGGCACCGCCGCCC
CCACCTCTTTCTTCTTCATCTTCTTCTTATGACCGGCGTGGTGATCGGGG
GGGTTTGAATGGGCACGGTGGTGTCGTCAGTGGAGGTGTTGGGAGTGGCG
GTGGTAGTACGGCTGCGCTCATGGCCGGTCGCGGTCGGGGGCGTGCCTTG
ACGCTCCCTGCGTGGATGACTGCTGGTGGTGGTGATGGTAGCGGTCCTGT
TGCTTTGGAGGAAGGCGGGTTGAACCAGCGCGGAGTGAAGGATGCCTCGG
CTTCGCGGACTAAGACGAAGACGTCGAAGCGAAGAAGCCAGAGCAGGGGT
TATGATAGCGGGTCCAGTGATCGAAGTGATTCGAGATCGCGGGGCGGACG
CAAGAAGAAGGAGAAAAAGAAGAAGCACCTCAAGGACAAGGAAAGGGAGA
AGGAAAAGAAGAAGGGGGAGAAGAAGAAGAAGCACAAGCACCATCGGGAC
AGCCGCAGTCGGAGCCGTGGCAGGCGTCGTTCGCTCTCTCCGGCACCGAA
GTTTCGTAGTGCCAGTGAGGCACGTCGCATTCTGAAGGCGTACGAAGAGA
AGCATGGGCGCAAATAGAGCTTTGGTTGAGTGTTCATGGAGAAAGGAGTG
CGTCCCTCCCACCATCATTTCCTCCCTTCCTCCCCCTGGCAAGCATACGT
CGTGCAGGCCATGAAAAGCCTGAAAAGAAAAAAAATGGTGCCAGGAAGCA
AAGAATAAACATGTAGTGTGGGGCCTGCACATCCCAAATCCTTGAGATCG
GGTCCACGAATTATTTTAAGTGTGATTATCCCCTTCTCCTACCTGGGAAA
GCTCGGATCTGACGATGCAATGTAAATAGAAAGTTCCTCTCCTTAGTCAA
GGGGGCATATTATTCGATCGTACCTAATCATCATCTAGTGTTCGTCCTAG
TCTTGTCCTTGCCTGTAGCCTGTACTTGTATGTCTATAGCTTACCGGGAG
TACTGGACTGATACCAAAGAACCTATGACATTCCGTAGTATGACCATATA
AGCTTGACCACCCTTGCCTGGGTTTAGACGACTATTACATTGGTGGTGAC
GTTTTATAATTTTATTTCTCTACGACTAAGTCGTGGAAATAAATTAATGT
TAACCTCTGAACGTAAATCTAAGACAAGCAAATGTTAAAGAACGGC

Coding sequence (CDS) from alignment at scaffold_3:730768..733213+

>mRNA_297 ID=mRNA_297|Name=jgi.p|Nanoce1779_2|576850|organism=Nannochloropsis oceanica|type=CDS|length=3402bp|location=Sequence derived from alignment at scaffold_3:730768..733213+ (Nannochloropsis oceanica)
ATGCCGCGCTCACGGTCTGTCTCTCGATCACCTCCCGCCAGAAGGAAGGG
TACAACGAGGCGTCGCTCATTTAGTGACGATGATAGCCGCAGTCCACCAC
CGAAGCGAACTTTTAGGCGGAGGTCACGTTCTCGATCTCGGTCTGGTTAC
TCGCGCTCTGCAAGACGCGACCGGAGCCGCAGTGGGGACCGTGACAATCG
TCCCAACCACTACAGCCGCTCGCCCTCTCCATCCCATCGCTGGCGCTATT
ATTCCCGTTCCCGCTCTTCTCCTCGCCATCGCGATGATCAACGATCTGGA
GCAGTAGGAAGGAGAGGAGAAGATTACGGTCATGGAGGAAGTGGGGGAGG
AAGGGGGGCAGGAGCAGGAGGAGGAGGTGAAGGGCCGGGAACGCTGCCAA
CTGTAGGCAAAATATATGGAGGGGAGGTAGTCAAGACTGAGTCGTATGGA
GCTTTTGTGCGCATTCCCGGCTTTCAACGTCAGGGACTCGTACACATCTC
TCAATTACGCGAGGGACGAACGGAGAGAGTGGATGACGTGGTAGTGACAG
GCCATAAGGTCTTTGTCAAGGTGGTGGAGGTGAAGGAGCAAGGGCCTGGC
GAAGCATCCAAGGTCAGTTTATCGATGCGCTATGCCGACCAAAAAACAGG
GGAGGACCTGGACCCGCACAACGAGAAATTTGAGAGGGACCAAGCTCGAG
GGGGAGGTGGACGGGGAGGAGGAGGGTTGCAGCCACGCGGTAAGATTGAG
TTGGGTGCGGTGATAAATAATAAGTGTAGCAAGTGTGGGGTTATGGGACA
TATGCCGTTTGAATGTCGGGGGGTGGTGGAAGGGAAAAGCTATGGATTGA
TTGGGGATGACGAGTTTTCGGCCTTGACCCGACAGCTTGCCGCGGCCCCA
CCTCCTCGCCCACTTCCCCCTTCCGCTTCTTATGGTGGTAATGGTGATGG
CTTTGGTGGTGGAGGAGCGGCAGGTCGAGGACGCGGACGGGCACTCTTGA
CACCTGCGTGGATGACAAAACAGGGTTTGTCGCTTGACGACGCTACTCCT
GCACGGGCCTCGTCTCCTCCTCCTCCCTCGAGCAGCAGCAGGCGTTCTCG
TTTCACGGACGCACCGGCACCGGCACCGCCGCCCCCACCTCTTTCTTCTT
CATCTTCTTCTTATGACCGGCGTGGTGATCGGGGGGGTTTGAATGGGCAC
GGTGGTGTCGTCAGTGGAGGTGTTGGGAGTGGCGGTGGTAGTACGGCTGC
GCTCATGGCCGGTCGCGGTCGGGGGCGTGCCTTGACGCTCCCTGCGTGGA
TGACTGCTGGTGGTGGTGATGGTAGCGGTCCTGTTGCTTTGGAGGAAGGC
GGGTTGAACCAGCGCGGAGTGAAGGATGCCTCGGCTTCGCGGACTAAGAC
GAAGACGTCGAAGCGAAGAAGCCAGAGCAGGGGTTATGATAGCGGGTCCA
GTGATCGAAGTGATTCGAGATCGCGGGGCGGACGCAAGAAGAAGGAGAAA
AAGAAGAAGCACCTCAAGGACAAGGAAAGGGAGAAGGAAAAGAAGAAGGG
GGAGAAGAAGAAGAAGCACAAGCACCATCGGGACAGCCGCAGTCGGAGCC
GTGGCAGGCGTCGTTCGCTCTCTCCGGCACCGAAGTTTCGTAGTGCCAGT
GAGGCACGTCGCATTCTGAAGGCGTACGAAGAGAAGCATGGGCGCAAATA
GATGCCGCGCTCACGGTCTGTCTCTCGATCACCTCCCGCCAGAAGGAAGG
GTACAACGAGGCGTCGCTCATTTAGTGACGATGATAGCCGCAGTCCACCA
CCGAAGCGAACTTTTAGGCGGAGGTCACGTTCTCGATCTCGGTCTGGTTA
CTCGCGCTCTGCAAGACGCGACCGGAGCCGCAGTGGGGACCGTGACAATC
GTCCCAACCACTACAGCCGCTCGCCCTCTCCATCCCATCGCTGGCGCTAT
TATTCCCGTTCCCGCTCTTCTCCTCGCCATCGCGATGATCAACGATCTGG
AGCAGTAGGAAGGAGAGGAGAAGATTACGGTCATGGAGGAAGTGGGGGAG
GAAGGGGGGCAGGAGCAGGAGGAGGAGGTGAAGGGCCGGGAACGCTGCCA
ACTGTAGGCAAAATATATGGAGGGGAGGTAGTCAAGACTGAGTCGTATGG
AGCTTTTGTGCGCATTCCCGGCTTTCAACGTCAGGGACTCGTACACATCT
CTCAATTACGCGAGGGACGAACGGAGAGAGTGGATGACGTGGTAGTGACA
GGCCATAAGGTCTTTGTCAAGGTGGTGGAGGTGAAGGAGCAAGGGCCTGG
CGAAGCATCCAAGGTCAGTTTATCGATGCGCTATGCCGACCAAAAAACAG
GGGAGGACCTGGACCCGCACAACGAGAAATTTGAGAGGGACCAAGCTCGA
GGGGGAGGTGGACGGGGAGGAGGAGGGTTGCAGCCACGCGGTAAGATTGA
GTTGGGTGCGGTGATAAATAATAAGTGTAGCAAGTGTGGGGTTATGGGAC
ATATGCCGTTTGAATGTCGGGGGGTGGTGGAAGGGAAAAGCTATGGATTG
ATTGGGGATGACGAGTTTTCGGCCTTGACCCGACAGCTTGCCGCGGCCCC
ACCTCCTCGCCCACTTCCCCCTTCCGCTTCTTATGGTGGTAATGGTGATG
GCTTTGGTGGTGGAGGAGCGGCAGGTCGAGGACGCGGACGGGCACTCTTG
ACACCTGCGTGGATGACAAAACAGGGTTTGTCGCTTGACGACGCTACTCC
TGCACGGGCCTCGTCTCCTCCTCCTCCCTCGAGCAGCAGCAGGCGTTCTC
GTTTCACGGACGCACCGGCACCGGCACCGCCGCCCCCACCTCTTTCTTCT
TCATCTTCTTCTTATGACCGGCGTGGTGATCGGGGGGGTTTGAATGGGCA
CGGTGGTGTCGTCAGTGGAGGTGTTGGGAGTGGCGGTGGTAGTACGGCTG
CGCTCATGGCCGGTCGCGGTCGGGGGCGTGCCTTGACGCTCCCTGCGTGG
ATGACTGCTGGTGGTGGTGATGGTAGCGGTCCTGTTGCTTTGGAGGAAGG
CGGGTTGAACCAGCGCGGAGTGAAGGATGCCTCGGCTTCGCGGACTAAGA
CGAAGACGTCGAAGCGAAGAAGCCAGAGCAGGGGTTATGATAGCGGGTCC
AGTGATCGAAGTGATTCGAGATCGCGGGGCGGACGCAAGAAGAAGGAGAA
AAAGAAGAAGCACCTCAAGGACAAGGAAAGGGAGAAGGAAAAGAAGAAGG
GGGAGAAGAAGAAGAAGCACAAGCACCATCGGGACAGCCGCAGTCGGAGC
CGTGGCAGGCGTCGTTCGCTCTCTCCGGCACCGAAGTTTCGTAGTGCCAG
TGAGGCACGTCGCATTCTGAAGGCGTACGAAGAGAAGCATGGGCGCAAAT
AG

Synonyms

Publications