jgi.p|Nanoce1779_2|539939, mRNA_2969 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|539939
Unique NamemRNA_2969
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1223
Alignment locationscaffold_7:369433..371225 -

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Properties
Property NameValue
TranscriptId540025
TrackFilteredModels2
ProteinId539939
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:369433..371225 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|539939gene_2969Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|539939mRNA_2969-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2969CDS_2969Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2969 ID=mRNA_2969|Name=jgi.p|Nanoce1779_2|539939|organism=Nannochloropsis oceanica|type=mRNA|length=1223bp
GCTGTCTGTTGCAGCCCTTGCCTCGCCAAACCTACGGCAACAGCGACTTT
TCAGTGCTTCAGTGCTCAGCACAGCCAACCCTATCCTGGTGCAACTTCAG
CTTTGTCGCCGCCTTTGTTTCCACCCCGATATCAACCCACCCGCAACTGC
CAAAATGAGCACCACTGCCAAAAACATCCCGCCCAGAAAGCAGCTCCGCG
CATGCTTGAACCTTATGCGACGTCTACCACCCCACAAGCAGAAGGACAAC
CTCGAGAGTCTGATGCAGCTCGTGTCACCAGAGTTGGGAGAGGAGCTCGC
CGAGTGCGTCGACATCCCTTTGGAAGAAGCCATTGACCCCGAGACGAATC
AACACTATCTTCTTTGCGACTACAATCGTGACGGCGCGTCGCACCGATCC
CCATGGTCCAACAAGTACTTTCCTCCTCCTCCTCTTTCCTCCACTTTGTA
TTTCCCTCCTGATTCGTTGCGCGCATTGGAGGTGGAGGCGAATGCACTCT
TTCAGATTTATCGTGAGCTGTACTATGATGGACAAGGGGTCTCCTCTGTA
TTTTTCTGGGACTTGCCTGACGAGGACGATCCCAATGACAGAGGAGGGGG
CAACAACAGCATCAGAGCAGGCGGTGGTGATGGATTTGCCGGTTGCTTTG
CAATCAAAAAGAAGGTAATGGGCACGCGGGCCTTCCGGGAGGGTACCTGG
GACTCGATGCACGTAGTCGAGGTTCAAGCTACAGCACGGGGAGCAGGAGC
AACAGCAAGCTATAAATTGACAAGCACTGTGCAAATATCCTTATTTGTCG
ATCATCCCGACATTGGGGAGGCTTGCTTGGCGGGGACGGTGACGAGGGCG
ACTGAAGCGACGCACGCAGTGGTGGGCAGCGCAGGGGGGCACGTTGCGAA
TATGGGGAGAATGATTGAAGACATGGAGATCTCGGTGCGAGGTGATTTAG
ACGTCCTCTACATGCAGCGGACGCGAGATATTGTGAGTAGCGTGCGCAAG
CCACCGCCTCCTCTGGACTGTAGGAGATACGGACAGACAGTCTTTCCTTC
GTGTGTGGGTGCGTCAGCAGAGCACACTCAATCTTTGTTTGCCGCTATTG
CTAAGCACGCCGCTCTGCGGGGCGATAAAGACGGAGATGTGTTCGAAGGA
TGATAAAATGAAATTGAAATAAAATATTTACATTAAAAAAAAAAAATGGA
CAAAGAACGAGAGGTTGAAGATG
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protein sequence of jgi.p|Nanoce1779_2|539939

>mRNA_2969-protein ID=mRNA_2969-protein|Name=jgi.p|Nanoce1779_2|539939|organism=Nannochloropsis oceanica|type=polypeptide|length=333bp
MSTTAKNIPPRKQLRACLNLMRRLPPHKQKDNLESLMQLVSPELGEELAE
CVDIPLEEAIDPETNQHYLLCDYNRDGASHRSPWSNKYFPPPPLSSTLYF
PPDSLRALEVEANALFQIYRELYYDGQGVSSVFFWDLPDEDDPNDRGGGN
NSIRAGGGDGFAGCFAIKKKVMGTRAFREGTWDSMHVVEVQATARGAGAT
ASYKLTSTVQISLFVDHPDIGEACLAGTVTRATEATHAVVGSAGGHVANM
GRMIEDMEISVRGDLDVLYMQRTRDIVSSVRKPPPPLDCRRYGQTVFPSC
VGASAEHTQSLFAAIAKHAALRGDKDGDVFEG*
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mRNA from alignment at scaffold_7:369433..371225-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2969 ID=mRNA_2969|Name=jgi.p|Nanoce1779_2|539939|organism=Nannochloropsis oceanica|type=mRNA|length=1793bp|location=Sequence derived from alignment at scaffold_7:369433..371225- (Nannochloropsis oceanica)
GCTGTCTGTTGCAGCCCTTGCCTCGCCAAACCTACGGCAACAGCGACTTT
TCAGTGCTTCAGTGCTCAGGTAAGGGACATGGACACCTCACGCGGTGTGG
AGCAATAAAGGATCTGAGGCTGTGCAAATGTGTGTTGTATGAAGCGTGAA
AAGTGAGAGTGCCTCTTGCATTTTGTTGGCATGCAATGATGAACGCCGCG
TGCGAGAGAATCTGACGGGAAGGCCTGCCTCCAAGCCCAGCAGCCTGGGC
TTAGGGGAGGAGGGACTGGAGCTGGGGAACTTGGTGCCACGGAGGCTCAA
CCTCGTGCACTAATTAAGCAACACGAAGGCCGGTCTGATAGTTAAGGCCA
GAGGCACATTTTGATCAGCTTTGCTCAGGCGTGAGCACACTCTCCCACGT
AATGACTTCCACCCCCTCGTCACACACAGCACAGCCAACCCTATCCTGGT
GCAACTTCAGCTTTGTCGCCGCCTTTGTTTCCACCCCGATATCAACCCAC
CCGCAACTGCCAAAATGAGCACCACTGCCAAAAACATCCCGCCCAGAAAG
CAGCTCCGCGCATGCTTGAACCTTATGCGACGTCTACCACCCCACAAGCA
GAAGGACAACCTCGAGAGTCTGATGCAGCTCGTGTCACCAGAGTTGGGAG
AGGAGCTCGCCGAGTGCGTCGACATCCCTTTGGAAGAAGCCATTGACCCC
GAGACGGTACGTGTGGTATGAAAGAGTGGGCGGCGGGGCAGTGGGCGAGT
GTGGTCTCGCCCATTTGGCTGGTCGTCGCACAAGAAATGAGACTTGCGCA
CTAGAGACCACACCCTTGCAGCTTGAAAGCTTTTTTGTCAGCCAATATAA
AGCCTACCCTCGTTCTGCTGGCGCAATTTTAACCTCCCACCTTTCTCACC
ACCACATGCTCATCAGAATCAACACTATCTTCTTTGCGACTACAATCGTG
ACGGCGCGTCGCACCGATCCCCATGGTCCAACAAGTACTTTCCTCCTCCT
CCTCTTTCCTCCACTTTGTATTTCCCTCCTGATTCGTTGCGCGCATTGGA
GGTGGAGGCGAATGCACTCTTTCAGATTTATCGTGAGCTGTACTATGATG
GACAAGGGGTCTCCTCTGTATTTTTCTGGGACTTGCCTGACGAGGACGAT
CCCAATGACAGAGGAGGGGGCAACAACAGCATCAGAGCAGGCGGTGGTGA
TGGATTTGCCGGTTGCTTTGCAATCAAAAAGAAGGTAATGGGCACGCGGG
CCTTCCGGGAGGGTACCTGGGACTCGATGCACGTAGTCGAGGTTCAAGCT
ACAGCACGGGGAGCAGGAGCAACAGCAAGCTATAAATTGACAAGCACTGT
GCAAATATCCTTATTTGTCGATCATCCCGACATTGGGGAGGCTTGCTTGG
CGGGGACGGTGACGAGGGCGACTGAAGCGACGCACGCAGTGGTGGGCAGC
GCAGGGGGGCACGTTGCGAATATGGGGAGAATGATTGAAGACATGGAGAT
CTCGGTGCGAGGTGATTTAGACGTCCTCTACATGCAGCGGACGCGAGATA
TTGTGAGTAGCGTGCGCAAGCCACCGCCTCCTCTGGACTGTAGGAGATAC
GGACAGACAGTCTTTCCTTCGTGTGTGGGTGCGTCAGCAGAGCACACTCA
ATCTTTGTTTGCCGCTATTGCTAAGCACGCCGCTCTGCGGGGCGATAAAG
ACGGAGATGTGTTCGAAGGATGATAAAATGAAATTGAAATAAAATATTTA
CATTAAAAAAAAAAAATGGACAAAGAACGAGAGGTTGAAGATG
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Coding sequence (CDS) from alignment at scaffold_7:369433..371225-

>mRNA_2969 ID=mRNA_2969|Name=jgi.p|Nanoce1779_2|539939|organism=Nannochloropsis oceanica|type=CDS|length=1998bp|location=Sequence derived from alignment at scaffold_7:369433..371225- (Nannochloropsis oceanica)
AATCAACACTATCTTCTTTGCGACTACAATCGTGACGGCGCGTCGCACCG
ATCCCCATGGTCCAACAAGTACTTTCCTCCTCCTCCTCTTTCCTCCACTT
TGTATTTCCCTCCTGATTCGTTGCGCGCATTGGAGGTGGAGGCGAATGCA
CTCTTTCAGATTTATCGTGAGCTGTACTATGATGGACAAGGGGTCTCCTC
TGTATTTTTCTGGGACTTGCCTGACGAGGACGATCCCAATGACAGAGGAG
GGGGCAACAACAGCATCAGAGCAGGCGGTGGTGATGGATTTGCCGGTTGC
TTTGCAATCAAAAAGAAGGTAATGGGCACGCGGGCCTTCCGGGAGGGTAC
CTGGGACTCGATGCACGTAGTCGAGGTTCAAGCTACAGCACGGGGAGCAG
GAGCAACAGCAAGCTATAAATTGACAAGCACTGTGCAAATATCCTTATTT
GTCGATCATCCCGACATTGGGGAGGCTTGCTTGGCGGGGACGGTGACGAG
GGCGACTGAAGCGACGCACGCAGTGGTGGGCAGCGCAGGGGGGCACGTTG
CGAATATGGGGAGAATGATTGAAGACATGGAGATCTCGGTGCGAGGTGAT
TTAGACGTCCTCTACATGCAGCGGACGCGAGATATTGTGAGTAGCGTGCG
CAAGCCACCGCCTCCTCTGGACTGTAGGAGATACGGACAGACAGTCTTTC
CTTCGTGTGTGGGTGCGTCAGCAGAGCACACTCAATCTTTGTTTGCCGCT
ATTGCTAAGCACGCCGCTCTGCGGGGCGATAAAGACGGAGATGTGTTCGA
AGGATGAATGAGCACCACTGCCAAAAACATCCCGCCCAGAAAGCAGCTCC
GCGCATGCTTGAACCTTATGCGACGTCTACCACCCCACAAGCAGAAGGAC
AACCTCGAGAGTCTGATGCAGCTCGTGTCACCAGAGTTGGGAGAGGAGCT
CGCCGAGTGCGTCGACATCCCTTTGGAAGAAGCCATTGACCCCGAGACGA
ATCAACACTATCTTCTTTGCGACTACAATCGTGACGGCGCGTCGCACCGA
TCCCCATGGTCCAACAAGTACTTTCCTCCTCCTCCTCTTTCCTCCACTTT
GTATTTCCCTCCTGATTCGTTGCGCGCATTGGAGGTGGAGGCGAATGCAC
TCTTTCAGATTTATCGTGAGCTGTACTATGATGGACAAGGGGTCTCCTCT
GTATTTTTCTGGGACTTGCCTGACGAGGACGATCCCAATGACAGAGGAGG
GGGCAACAACAGCATCAGAGCAGGCGGTGGTGATGGATTTGCCGGTTGCT
TTGCAATCAAAAAGAAGGTAATGGGCACGCGGGCCTTCCGGGAGGGTACC
TGGGACTCGATGCACGTAGTCGAGGTTCAAGCTACAGCACGGGGAGCAGG
AGCAACAGCAAGCTATAAATTGACAAGCACTGTGCAAATATCCTTATTTG
TCGATCATCCCGACATTGGGGAGGCTTGCTTGGCGGGGACGGTGACGAGG
GCGACTGAAGCGACGCACGCAGTGGTGGGCAGCGCAGGGGGGCACGTTGC
GAATATGGGGAGAATGATTGAAGACATGGAGATCTCGGTGCGAGGTGATT
TAGACGTCCTCTACATGCAGCGGACGCGAGATATTGTGAGTAGCGTGCGC
AAGCCACCGCCTCCTCTGGACTGTAGGAGATACGGACAGACAGTCTTTCC
TTCGTGTGTGGGTGCGTCAGCAGAGCACACTCAATCTTTGTTTGCCGCTA
TTGCTAAGCACGCCGCTCTGCGGGGCGATAAAGACGGAGATGTGTTCGAA
GGATGAATGAGCACCACTGCCAAAAACATCCCGCCCAGAAAGCAGCTCCG
CGCATGCTTGAACCTTATGCGACGTCTACCACCCCACAAGCAGAAGGACA
ACCTCGAGAGTCTGATGCAGCTCGTGTCACCAGAGTTGGGAGAGGAGCTC
GCCGAGTGCGTCGACATCCCTTTGGAAGAAGCCATTGACCCCGAGACG
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Synonyms
Publications