jgi.p|Nanoce1779_2|391882, mRNA_2967 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|391882
Unique NamemRNA_2967
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length681
Alignment locationscaffold_7:365741..366421 +

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Properties
Property NameValue
TranscriptId391968
TrackFilteredModels2
ProteinId391882
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:365741..366421 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|391882gene_2967Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|391882mRNA_2967-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2967CDS_2967Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2967 ID=mRNA_2967|Name=jgi.p|Nanoce1779_2|391882|organism=Nannochloropsis oceanica|type=mRNA|length=681bp
CGTCGCATTACCACCACCATACACCAGAAAGATCGGGTCTCGAGGCACGG
ACTGCGAGAGCCATCGAATGCCCCGCTGGCGTGCATACTCGCATTTTTAC
ACACGACGTGTGGGACCATTTTAACAGTATGTTTGCAAGAGCACTAATGA
AGCAATGAAGGCCCGGCAAAATAGGGTAACCGATCATTTTGCTTTTCGGG
CTCCACGTAGGACCCGGGAGCAAGAGGTGTCGCCATCTTCTCCATGGTCA
AAGTCCCCTCTTACCCGACCATCGACAGTCCCCACCTTAAACCCCACACC
TCACACGCCAGTGGTACGAAGGATTTTTTTTTCAATGGAGATGTACTCCC
CTGTTCCCCACCCTGGAAGAAGGACATCAGCAGCCTTTTGATGAAGAACT
CCAACCTGACTCCCTTACCCTTTACAATCTTTAAACTTTACCAAAGTTCA
AATTGTGGACTGCGACTCGTCCACATGAAAGTGGAATCACTAGTTATCAC
ACATCAGCATGATGCGGTGAATTTGTACTTAGGCCTTGTACACACCGCCC
GTCACGTGCAGGGAGATGGCTTGGCTAGAAACTTGTTTCTCAACTATGAA
GAATTTTTTTCTTTCATTTTGAAAATATTATTTTTTTAGAAATCGAGAGA
ATAAACAACAGATGGGTCGATGACTGGAATA
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protein sequence of jgi.p|Nanoce1779_2|391882

>mRNA_2967-protein ID=mRNA_2967-protein|Name=jgi.p|Nanoce1779_2|391882|organism=Nannochloropsis oceanica|type=polypeptide|length=132bp
MVKVPSYPTIDSPHLKPHTSHASGTKDFFFNGDVLPCSPPWKKDISSLLM
KNSNLTPLPFTIFKLYQSSNCGLRLVHMKVESLVITHQHDAVNLYLGLVH
TARHVQGDGLARNLFLNYEEFFSFILKILFF*
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mRNA from alignment at scaffold_7:365741..366421+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2967 ID=mRNA_2967|Name=jgi.p|Nanoce1779_2|391882|organism=Nannochloropsis oceanica|type=mRNA|length=681bp|location=Sequence derived from alignment at scaffold_7:365741..366421+ (Nannochloropsis oceanica)
CGTCGCATTACCACCACCATACACCAGAAAGATCGGGTCTCGAGGCACGG
ACTGCGAGAGCCATCGAATGCCCCGCTGGCGTGCATACTCGCATTTTTAC
ACACGACGTGTGGGACCATTTTAACAGTATGTTTGCAAGAGCACTAATGA
AGCAATGAAGGCCCGGCAAAATAGGGTAACCGATCATTTTGCTTTTCGGG
CTCCACGTAGGACCCGGGAGCAAGAGGTGTCGCCATCTTCTCCATGGTCA
AAGTCCCCTCTTACCCGACCATCGACAGTCCCCACCTTAAACCCCACACC
TCACACGCCAGTGGTACGAAGGATTTTTTTTTCAATGGAGATGTACTCCC
CTGTTCCCCACCCTGGAAGAAGGACATCAGCAGCCTTTTGATGAAGAACT
CCAACCTGACTCCCTTACCCTTTACAATCTTTAAACTTTACCAAAGTTCA
AATTGTGGACTGCGACTCGTCCACATGAAAGTGGAATCACTAGTTATCAC
ACATCAGCATGATGCGGTGAATTTGTACTTAGGCCTTGTACACACCGCCC
GTCACGTGCAGGGAGATGGCTTGGCTAGAAACTTGTTTCTCAACTATGAA
GAATTTTTTTCTTTCATTTTGAAAATATTATTTTTTTAGAAATCGAGAGA
ATAAACAACAGATGGGTCGATGACTGGAATA
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Coding sequence (CDS) from alignment at scaffold_7:365741..366421+

>mRNA_2967 ID=mRNA_2967|Name=jgi.p|Nanoce1779_2|391882|organism=Nannochloropsis oceanica|type=CDS|length=396bp|location=Sequence derived from alignment at scaffold_7:365741..366421+ (Nannochloropsis oceanica)
ATGGTCAAAGTCCCCTCTTACCCGACCATCGACAGTCCCCACCTTAAACC
CCACACCTCACACGCCAGTGGTACGAAGGATTTTTTTTTCAATGGAGATG
TACTCCCCTGTTCCCCACCCTGGAAGAAGGACATCAGCAGCCTTTTGATG
AAGAACTCCAACCTGACTCCCTTACCCTTTACAATCTTTAAACTTTACCA
AAGTTCAAATTGTGGACTGCGACTCGTCCACATGAAAGTGGAATCACTAG
TTATCACACATCAGCATGATGCGGTGAATTTGTACTTAGGCCTTGTACAC
ACCGCCCGTCACGTGCAGGGAGATGGCTTGGCTAGAAACTTGTTTCTCAA
CTATGAAGAATTTTTTTCTTTCATTTTGAAAATATTATTTTTTTAG
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Synonyms
Publications