jgi.p|Nanoce1779_2|391778, mRNA_2966 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|391778
Unique Name	mRNA_2966
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1111
Alignment location	scaffold_7:363229..365352 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	391864
Track	FilteredModels2
ProteinId	391778

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:363229..365352 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|391778	gene_2966	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|391778	mRNA_2966-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2966	CDS_2966	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:363229..365352-
coding sequence from alignment at scaffold_7:363229..365352-

mRNA sequence

>mRNA_2966 ID=mRNA_2966|Name=jgi.p|Nanoce1779_2|391778|organism=Nannochloropsis oceanica|type=mRNA|length=1111bp
CTGCTGGGGCCGCTGTGCATCCGTATGCCCGAGGCCAGCGGGTGTAGTGG
ATGACGGCATCAGAGCCAGCACAGGATCTATTCCTCATTCCGGTCAATCA
TGAAGTGGGTCCTGCAAGAAGGAGTGGACTTCAAGCCCCACGGCCCCAAC
AGCCGCGGAACGATGTACACGCAAATGTTCCAAGTCCTCCCGGCCCTGGA
GCCGTTCTACATGAACTGGGAGAAGACCTACGACTCTGCTATTGTATTTG
ACTGGATGAAGAGCGTGCCTTGGGTTCCGATCTTGGCGGTGGTAGTTTAT
GTCGTAGGAATTTTCGGTGGACAAGCCATTATGAAGAACAAGAAGCCCTT
TGATCTAAAGTGGCCCTTGGCGTACTGGAACTTGGCTTTGTCCATATTTT
CGATCATGGGCGTGATTCGCGTGGTGCCTCACCTTGTCTACCTGACAGCG
ACCAAGGGGTTGAGTGTCGTGGCGTGCGGGGCCCCGGAGCCTCTGTATGG
CAACGCCGCGGTAGGTTTTTGGGTGCAAGCCTTCATTCTGTCGAAACTGG
CAGAGCTGATCGACACGGTGTTCATCGTTCTGCGGAAGAAGCCTCTACAG
TTCTTGCACTGGTACCACCACGTGACGGTCCTCCTGTTCACCTGGTTCTG
CTACACGAAGGAGAATCCGGGTATCATTTTTGTGGCCATGAATTATTCGG
TGCATGCCATTATGTATGGCTACTACTTCCTGATGGCCATTCAGGTCCGA
CCTTCCTGGCTGAAGCCAATCTATATCACCATGATGCAAATCTCCCAAAT
GGTGGTGGGCGTCGCCACTGCCGTCTTTTACATCTACAAGATCCGATCGG
GCGAGACATGCGCCGTGGATCAGGAACTGCTTATTGCCTGTGGAGTGATG
TACTCTACCTACCTGTATTTGTTCTGTGAGTTTGCGGTAAAGAGGATGAA
GAGGAGTAGCAGTAAGATGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGA
TTATGATGATGAGAAAGTGATTCCTTTTTTCATTTGTCGTTGGGTTGGGT
GAGTGGATGGGCGTCGGGTCGCTTGTGGTTGTTTTGTGTCTCTGTGCTTA
TGTGGATGGGT

protein sequence of jgi.p|Nanoce1779_2|391778

>mRNA_2966-protein ID=mRNA_2966-protein|Name=jgi.p|Nanoce1779_2|391778|organism=Nannochloropsis oceanica|type=polypeptide|length=307bp
MKWVLQEGVDFKPHGPNSRGTMYTQMFQVLPALEPFYMNWEKTYDSAIVF
DWMKSVPWVPILAVVVYVVGIFGGQAIMKNKKPFDLKWPLAYWNLALSIF
SIMGVIRVVPHLVYLTATKGLSVVACGAPEPLYGNAAVGFWVQAFILSKL
AELIDTVFIVLRKKPLQFLHWYHHVTVLLFTWFCYTKENPGIIFVAMNYS
VHAIMYGYYFLMAIQVRPSWLKPIYITMMQISQMVVGVATAVFYIYKIRS
GETCAVDQELLIACGVMYSTYLYLFCEFAVKRMKRSSSKMRRRRKRRRRR
IMMMRK*

mRNA from alignment at scaffold_7:363229..365352-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2966 ID=mRNA_2966|Name=jgi.p|Nanoce1779_2|391778|organism=Nannochloropsis oceanica|type=mRNA|length=2124bp|location=Sequence derived from alignment at scaffold_7:363229..365352- (Nannochloropsis oceanica)
CTGCTGGGGCCGCTGTGCATCCGTATGCCCGAGGCCAGCGGGTGTAGTGG
ATGGTATGCACATCGTTCAGCCTCTCCTCCAGTGAGCATTCTCGACAGCC
GGCTGCCGGGCACACATGATGCACGACGCTAGGCGCAATTAATGAGCATC
CGTCGAGGCATTCCACGGCCATCGCTTCCACACGAATACAAGCAAGCATA
GCTTCTTACTCACACGCACCCCACCCTCCCTCTCTCACAGACGGCATCAG
AGCCAGCACAGGATCTATTCCTCATTCCGGTCAATCATGAAGTGGGTCCT
GCAAGAAGGAGTGGACTTCAAGCCCCACGGCCCCAACAGCCGCGGAACGA
TGTACACGCAAATGTTCCAAGTCCTCCCGGCCCTGGAGCCGTTCTACATG
AACTGGGAGAAGACCTACGACTCTGCTATTGTATTTGACTGGATGAAGAG
CGTGCCTTGGGTTCCGATCTTGGCGGTGGTAGTTTATGTCGTAGGAATTT
TCGGTGGACAAGCCATTATGAAGAACAAGAAGCCCTTTGATCTAAAGTGG
CCCTTGGCGTACTGGAACTTGGCTTTGTCCATATTTTCGATCATGGGCGT
GATTCGCGTGGTGCCTCACCTTGTCTACCTGACAGCGACCAAGGGGTTGA
GTGTCGTGGCGTGCGGGGCCCCGGAGCCTCTGTATGGCAACGCCGCGGTA
GGTTTTTGGGTGCAAGCCTTCATTCTGTCGAAACTGGCAGAGCTGATCGA
CACGGTGTTCATCGTTCTGCGGAAGAAGCCTCTACAGTTCTTGCACTGGT
ACGGGGGTTGGGATGGGGGAATGGTGGAGCCAAGGAGAGGGAAAGCGAGT
TAGCATTCATGCGCTGCTATGTGTCCTTTACCTGGCGCAGAGCGTTTGTG
CCCATTACCCATATATAGGGAAAGAAAGGAGGAAAAAGGACACAGAGGGA
TCCAAACTGTCCTTATGCAGAGATCAATCGCCACAAGAGGCATGAACCAT
AGGAAGTCACGCCCTCCTTTTGTTCGCCCCTCCCTCCTCCTCCCCTTAGG
TACCACCACGTGACGGTCCTCCTGTTCACCTGGTTCTGCTACACGAAGGA
GAATCCGGGTATCATTTTTGTGGCCATGAATTATTCGGTGCATGCCATTA
TGTATGGCTACTACTTCCTGGTACGTGATCCCTTTCTTTCTCTCTCCTTT
CTCCCACTCCTATTGTGCACGCGTGTCTCTACCCCCTGACATAGATCCTT
TTCTCTCTCCCTTCTTCCATGCCTTCATCTCTCTCTTCCTTCTTCTCTAC
TCTTTCTTCCCGTCCTGTCGCTTCCTCCTTGCTTCGCTCCTGTTATATCC
AGGCAACAACTAAGCCTCTCTTGACACTGACCCACCCTCCCTCCCTCCCG
CCCGCCCGACCGCCCTCCTCAGATGGCCATTCAGGTCCGACCTTCCTGGC
TGAAGCCAATCTATATCACCATGATGCAAATCTCCCAAATGGTGGTGGGC
GTCGCCACTGCCGTCTTTTACATCTACAAGATCCGATCGGGCGAGACATG
CGCCGTGGATCAGGAACTGCTTATTGCCTGTGGAGTGATGTACTCTACCT
ACCTGTATTTGTTCTGTGAGTTTGCGGTAAAGAGGTTCATTTTAGGCGGG
CAGGGGGCGGCAGGGGCGCCGAAGGGAAAAACGAAGGCGCAGTAGGGGGG
GGAAAGAGGGGGATATATGGAAGGGGGCATTAGCAGTGGTGGAGGTGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAAGCAGCAGGAGCGGCAATA
GGAAGAGGATGAAGAGGAGTAGCAGTAAGATGAGGAGGAGGAGGAAGAGG
AGGAGGAGGAGGATTATGATGATGAGAAAGTGATTCCTTTTTTCATTTGT
CGTTGGGTTGGGTGAGTGGATGGGCGTCGGGTCGCTTGTGGTTGTTTTGT
GTCTCTGTGCTTATGTGGATGGGT

Coding sequence (CDS) from alignment at scaffold_7:363229..365352-

>mRNA_2966 ID=mRNA_2966|Name=jgi.p|Nanoce1779_2|391778|organism=Nannochloropsis oceanica|type=CDS|length=3684bp|location=Sequence derived from alignment at scaffold_7:363229..365352- (Nannochloropsis oceanica)
GATGAAGAGGAGTAGCAGTAAGATGAGGAGGAGGAGGAAGAGGAGGAGGA
GGAGGATTATGATGATGAGAAAGTGAATGGCCATTCAGGTCCGACCTTCC
TGGCTGAAGCCAATCTATATCACCATGATGCAAATCTCCCAAATGGTGGT
GGGCGTCGCCACTGCCGTCTTTTACATCTACAAGATCCGATCGGGCGAGA
CATGCGCCGTGGATCAGGAACTGCTTATTGCCTGTGGAGTGATGTACTCT
ACCTACCTGTATTTGTTCTGTGAGTTTGCGGTAAAGAGGTACCACCACGT
GACGGTCCTCCTGTTCACCTGGTTCTGCTACACGAAGGAGAATCCGGGTA
TCATTTTTGTGGCCATGAATTATTCGGTGCATGCCATTATGTATGGCTAC
TACTTCCTGATGAAGTGGGTCCTGCAAGAAGGAGTGGACTTCAAGCCCCA
CGGCCCCAACAGCCGCGGAACGATGTACACGCAAATGTTCCAAGTCCTCC
CGGCCCTGGAGCCGTTCTACATGAACTGGGAGAAGACCTACGACTCTGCT
ATTGTATTTGACTGGATGAAGAGCGTGCCTTGGGTTCCGATCTTGGCGGT
GGTAGTTTATGTCGTAGGAATTTTCGGTGGACAAGCCATTATGAAGAACA
AGAAGCCCTTTGATCTAAAGTGGCCCTTGGCGTACTGGAACTTGGCTTTG
TCCATATTTTCGATCATGGGCGTGATTCGCGTGGTGCCTCACCTTGTCTA
CCTGACAGCGACCAAGGGGTTGAGTGTCGTGGCGTGCGGGGCCCCGGAGC
CTCTGTATGGCAACGCCGCGGTAGGTTTTTGGGTGCAAGCCTTCATTCTG
TCGAAACTGGCAGAGCTGATCGACACGGTGTTCATCGTTCTGCGGAAGAA
GCCTCTACAGTTCTTGCACTGGATGAAGAGGAGTAGCAGTAAGATGAGGA
GGAGGAGGAAGAGGAGGAGGAGGAGGATTATGATGATGAGAAAGTGAATG
GCCATTCAGGTCCGACCTTCCTGGCTGAAGCCAATCTATATCACCATGAT
GCAAATCTCCCAAATGGTGGTGGGCGTCGCCACTGCCGTCTTTTACATCT
ACAAGATCCGATCGGGCGAGACATGCGCCGTGGATCAGGAACTGCTTATT
GCCTGTGGAGTGATGTACTCTACCTACCTGTATTTGTTCTGTGAGTTTGC
GGTAAAGAGGTACCACCACGTGACGGTCCTCCTGTTCACCTGGTTCTGCT
ACACGAAGGAGAATCCGGGTATCATTTTTGTGGCCATGAATTATTCGGTG
CATGCCATTATGTATGGCTACTACTTCCTGATGAAGTGGGTCCTGCAAGA
AGGAGTGGACTTCAAGCCCCACGGCCCCAACAGCCGCGGAACGATGTACA
CGCAAATGTTCCAAGTCCTCCCGGCCCTGGAGCCGTTCTACATGAACTGG
GAGAAGACCTACGACTCTGCTATTGTATTTGACTGGATGAAGAGCGTGCC
TTGGGTTCCGATCTTGGCGGTGGTAGTTTATGTCGTAGGAATTTTCGGTG
GACAAGCCATTATGAAGAACAAGAAGCCCTTTGATCTAAAGTGGCCCTTG
GCGTACTGGAACTTGGCTTTGTCCATATTTTCGATCATGGGCGTGATTCG
CGTGGTGCCTCACCTTGTCTACCTGACAGCGACCAAGGGGTTGAGTGTCG
TGGCGTGCGGGGCCCCGGAGCCTCTGTATGGCAACGCCGCGGTAGGTTTT
TGGGTGCAAGCCTTCATTCTGTCGAAACTGGCAGAGCTGATCGACACGGT
GTTCATCGTTCTGCGGAAGAAGCCTCTACAGTTCTTGCACTGGATGAAGA
GGAGTAGCAGTAAGATGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGATT
ATGATGATGAGAAAGTGAATGGCCATTCAGGTCCGACCTTCCTGGCTGAA
GCCAATCTATATCACCATGATGCAAATCTCCCAAATGGTGGTGGGCGTCG
CCACTGCCGTCTTTTACATCTACAAGATCCGATCGGGCGAGACATGCGCC
GTGGATCAGGAACTGCTTATTGCCTGTGGAGTGATGTACTCTACCTACCT
GTATTTGTTCTGTGAGTTTGCGGTAAAGAGGTACCACCACGTGACGGTCC
TCCTGTTCACCTGGTTCTGCTACACGAAGGAGAATCCGGGTATCATTTTT
GTGGCCATGAATTATTCGGTGCATGCCATTATGTATGGCTACTACTTCCT
GATGAAGTGGGTCCTGCAAGAAGGAGTGGACTTCAAGCCCCACGGCCCCA
ACAGCCGCGGAACGATGTACACGCAAATGTTCCAAGTCCTCCCGGCCCTG
GAGCCGTTCTACATGAACTGGGAGAAGACCTACGACTCTGCTATTGTATT
TGACTGGATGAAGAGCGTGCCTTGGGTTCCGATCTTGGCGGTGGTAGTTT
ATGTCGTAGGAATTTTCGGTGGACAAGCCATTATGAAGAACAAGAAGCCC
TTTGATCTAAAGTGGCCCTTGGCGTACTGGAACTTGGCTTTGTCCATATT
TTCGATCATGGGCGTGATTCGCGTGGTGCCTCACCTTGTCTACCTGACAG
CGACCAAGGGGTTGAGTGTCGTGGCGTGCGGGGCCCCGGAGCCTCTGTAT
GGCAACGCCGCGGTAGGTTTTTGGGTGCAAGCCTTCATTCTGTCGAAACT
GGCAGAGCTGATCGACACGGTGTTCATCGTTCTGCGGAAGAAGCCTCTAC
AGTTCTTGCACTGGATGAAGAGGAGTAGCAGTAAGATGAGGAGGAGGAGG
AAGAGGAGGAGGAGGAGGATTATGATGATGAGAAAGTGAATGGCCATTCA
GGTCCGACCTTCCTGGCTGAAGCCAATCTATATCACCATGATGCAAATCT
CCCAAATGGTGGTGGGCGTCGCCACTGCCGTCTTTTACATCTACAAGATC
CGATCGGGCGAGACATGCGCCGTGGATCAGGAACTGCTTATTGCCTGTGG
AGTGATGTACTCTACCTACCTGTATTTGTTCTGTGAGTTTGCGGTAAAGA
GGTACCACCACGTGACGGTCCTCCTGTTCACCTGGTTCTGCTACACGAAG
GAGAATCCGGGTATCATTTTTGTGGCCATGAATTATTCGGTGCATGCCAT
TATGTATGGCTACTACTTCCTGATGAAGTGGGTCCTGCAAGAAGGAGTGG
ACTTCAAGCCCCACGGCCCCAACAGCCGCGGAACGATGTACACGCAAATG
TTCCAAGTCCTCCCGGCCCTGGAGCCGTTCTACATGAACTGGGAGAAGAC
CTACGACTCTGCTATTGTATTTGACTGGATGAAGAGCGTGCCTTGGGTTC
CGATCTTGGCGGTGGTAGTTTATGTCGTAGGAATTTTCGGTGGACAAGCC
ATTATGAAGAACAAGAAGCCCTTTGATCTAAAGTGGCCCTTGGCGTACTG
GAACTTGGCTTTGTCCATATTTTCGATCATGGGCGTGATTCGCGTGGTGC
CTCACCTTGTCTACCTGACAGCGACCAAGGGGTTGAGTGTCGTGGCGTGC
GGGGCCCCGGAGCCTCTGTATGGCAACGCCGCGGTAGGTTTTTGGGTGCA
AGCCTTCATTCTGTCGAAACTGGCAGAGCTGATCGACACGGTGTTCATCG
TTCTGCGGAAGAAGCCTCTACAGTTCTTGCACTG

Synonyms

Publications