jgi.p|Nanoce1779_2|584007, mRNA_2965 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|584007
Unique NamemRNA_2965
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length963
Alignment locationscaffold_7:361471..362560 +

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Properties
Property NameValue
TranscriptId584093
TrackFilteredModels2
ProteinId584007
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:361471..362560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584007gene_2965Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|584007mRNA_2965-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2965CDS_2965Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2965 ID=mRNA_2965|Name=jgi.p|Nanoce1779_2|584007|organism=Nannochloropsis oceanica|type=mRNA|length=963bp
GACGGGGGAAACCCCTCCGCAAGTAGGTTTATTAAAGGGAGGAGGGATGG
ACGGAGGGAGGGATGGCAGGGCGCTAATTACGCAGACAGGATCGCTTCTT
CTTAAATGTCGGAGCTACACTGTCCGACCAGGATGGAGAGAAGGAAAAAG
ATCTGAAACATGTTCCATGCGAAATCCTATTTCTTGTCTTACGCATCTTG
TGTGTATTTTTACCCATACTCCGCAGGATCGGTGGTTGCCCGTGGCGACC
AAGGAGGGCATCTACGCGGGAGAGTTGAACTTTCACGTGCACTGGACCAA
GACCCAAGTGCGATACCGACAGTCGGTGGAGCTCTTGCAGCGCGCTGTCC
TCAAAACCCAGGCACTTACGTCTCCCTTCGAGCCCAGCATTGAGAGACTC
GTCGCCCTCTTCTCGGACTTCCTCTTCTTTCTTGGCAGCCGAATCAAACG
CCTCGGCAACACCCAAAAGGGTGTAGTCCTTGCGTTGCTCGTCGCCGTGC
TGGCTGCTGTTGCCACTTGCATCACGGTGCCGGCATTGGTGTTCTTCCCT
ATTACCGCTCTGTTAGTGGGGGGGGTGCTGCTGGGATCTGTGTGTGCGTT
GCCGCTGGTGATGGTGGGAGGATGGATTGTGCTGTGCACCCGACCAGTGC
AGCAGAAGGTGGTGGGGCCGGTGGTTGAGCGGATGTTGAAGATGGAGAGG
GTGAAGAAGCTCTTGACCCTCGATTAGGAGCGGAGGAATGGAGAGGGGAG
AGATGGAAGCAGGGGAATGACGTTTTTAGCTCTCGATATGAGTTTGTCAC
TCGTTCCATCGATTTCATTTGTTTCTTTTTTGGGTTTGAAGAAAGAAGAA
GGGAGAGGAGAAAAAGGATGGAAAGAGATTCGGTAAGGTGAAAGGAGAAA
GTCTGTGCCTGTGGTTGGCATGTGGGAGATTTCGAGGGTATCGATGTAAG
AGTATGTCTCGGT
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protein sequence of jgi.p|Nanoce1779_2|584007

>mRNA_2965-protein ID=mRNA_2965-protein|Name=jgi.p|Nanoce1779_2|584007|organism=Nannochloropsis oceanica|type=polypeptide|length=227bp
MDGGRDGRALITQTGSLLLKCRSYTVRPGWREGKRSETCSMRNPISCLTH
LVCIFTHTPQDRWLPVATKEGIYAGELNFHVHWTKTQVRYRQSVELLQRA
VLKTQALTSPFEPSIERLVALFSDFLFFLGSRIKRLGNTQKGVVLALLVA
VLAAVATCITVPALVFFPITALLVGGVLLGSVCALPLVMVGGWIVLCTRP
VQQKVVGPVVERMLKMERVKKLLTLD*
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mRNA from alignment at scaffold_7:361471..362560+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2965 ID=mRNA_2965|Name=jgi.p|Nanoce1779_2|584007|organism=Nannochloropsis oceanica|type=mRNA|length=1090bp|location=Sequence derived from alignment at scaffold_7:361471..362560+ (Nannochloropsis oceanica)
GACGGGGGAAACCCCTCCGCAAGTAGGTTTATTAAAGGGAGGAGGGATGG
ACGGAGGGAGGGATGGCAGGGCGCTAATTACGCAGACAGGATCGCTTCTT
CTTAAATGTCGGAGCTACACTGTCCGACCAGGATGGAGAGAAGGAAAAAG
ATCTGAAACATGTTCCATGCGAAATCCTATTTCTTGTCTTACGCATCTTG
TGTGTATTTTTACCCATACTCCGCAGGATCGGTGGTTGCCCGTGGCGACC
AAGGAGGGCATCTACGCGGGAGAGTTGAACTTTCACGTGCACTGGACCAA
GACCCAAGTGCGATACCGACAGTCGGTGGAGCTCTTGCAGGTACGTCCTT
TTCTTGCCGCCACTTTCTTTCTTGTCAGCAGTCCGTCTATTGCTTCCACT
TGCCCTCACATGCCCTCTTCCTCCCCTCCTTCCCTCCCTTCCTCTCCTTC
TCTCCCTGCACCAACAGCGCGCTGTCCTCAAAACCCAGGCACTTACGTCT
CCCTTCGAGCCCAGCATTGAGAGACTCGTCGCCCTCTTCTCGGACTTCCT
CTTCTTTCTTGGCAGCCGAATCAAACGCCTCGGCAACACCCAAAAGGGTG
TAGTCCTTGCGTTGCTCGTCGCCGTGCTGGCTGCTGTTGCCACTTGCATC
ACGGTGCCGGCATTGGTGTTCTTCCCTATTACCGCTCTGTTAGTGGGGGG
GGTGCTGCTGGGATCTGTGTGTGCGTTGCCGCTGGTGATGGTGGGAGGAT
GGATTGTGCTGTGCACCCGACCAGTGCAGCAGAAGGTGGTGGGGCCGGTG
GTTGAGCGGATGTTGAAGATGGAGAGGGTGAAGAAGCTCTTGACCCTCGA
TTAGGAGCGGAGGAATGGAGAGGGGAGAGATGGAAGCAGGGGAATGACGT
TTTTAGCTCTCGATATGAGTTTGTCACTCGTTCCATCGATTTCATTTGTT
TCTTTTTTGGGTTTGAAGAAAGAAGAAGGGAGAGGAGAAAAAGGATGGAA
AGAGATTCGGTAAGGTGAAAGGAGAAAGTCTGTGCCTGTGGTTGGCATGT
GGGAGATTTCGAGGGTATCGATGTAAGAGTATGTCTCGGT
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Coding sequence (CDS) from alignment at scaffold_7:361471..362560+

>mRNA_2965 ID=mRNA_2965|Name=jgi.p|Nanoce1779_2|584007|organism=Nannochloropsis oceanica|type=CDS|length=1362bp|location=Sequence derived from alignment at scaffold_7:361471..362560+ (Nannochloropsis oceanica)
ATGGACGGAGGGAGGGATGGCAGGGCGCTAATTACGCAGACAGGATCGCT
TCTTCTTAAATGTCGGAGCTACACTGTCCGACCAGGATGGAGAGAAGGAA
AAAGATCTGAAACATGTTCCATGCGAAATCCTATTTCTTGTCTTACGCAT
CTTGTGTGTATTTTTACCCATACTCCGCAGGATCGGTGGTTGCCCGTGGC
GACCAAGGAGGGCATCTACGCGGGAGAGTTGAACTTTCACGTGCACTGGA
CCAAGACCCAAGTGCGATACCGACAGTCGGTGGAGCTCTTGCAGCGCGCT
GTCCTCAAAACCCAGGCACTTACGTCTCCCTTCGAGCCCAGCATTGAGAG
ACTCGTCGCCCTCTTCTCGGACTTCCTCTTCTTTCTTGGCAGCCGAATCA
AACGCCTCGGCAACACCCAAAAGGGTGTAGTCCTTGCGTTGCTCGTCGCC
GTGCTGGCTGCTGTTGCCACTTGCATCACGGTGCCGGCATTGGTGTTCTT
CCCTATTACCGCTCTGTTAGTGGGGGGGGTGCTGCTGGGATCTGTGTGTG
CGTTGCCGCTGGTGATGGTGGGAGGATGGATTGTGCTGTGCACCCGACCA
GTGCAGCAGAAGGTGGTGGGGCCGGTGGTTGAGCGGATGTTGAAGATGGA
GAGGGTGAAGAAGCTCTTGACCCTCGATTAGATGGACGGAGGGAGGGATG
GCAGGGCGCTAATTACGCAGACAGGATCGCTTCTTCTTAAATGTCGGAGC
TACACTGTCCGACCAGGATGGAGAGAAGGAAAAAGATCTGAAACATGTTC
CATGCGAAATCCTATTTCTTGTCTTACGCATCTTGTGTGTATTTTTACCC
ATACTCCGCAGGATCGGTGGTTGCCCGTGGCGACCAAGGAGGGCATCTAC
GCGGGAGAGTTGAACTTTCACGTGCACTGGACCAAGACCCAAGTGCGATA
CCGACAGTCGGTGGAGCTCTTGCAGCGCGCTGTCCTCAAAACCCAGGCAC
TTACGTCTCCCTTCGAGCCCAGCATTGAGAGACTCGTCGCCCTCTTCTCG
GACTTCCTCTTCTTTCTTGGCAGCCGAATCAAACGCCTCGGCAACACCCA
AAAGGGTGTAGTCCTTGCGTTGCTCGTCGCCGTGCTGGCTGCTGTTGCCA
CTTGCATCACGGTGCCGGCATTGGTGTTCTTCCCTATTACCGCTCTGTTA
GTGGGGGGGGTGCTGCTGGGATCTGTGTGTGCGTTGCCGCTGGTGATGGT
GGGAGGATGGATTGTGCTGTGCACCCGACCAGTGCAGCAGAAGGTGGTGG
GGCCGGTGGTTGAGCGGATGTTGAAGATGGAGAGGGTGAAGAAGCTCTTG
ACCCTCGATTAG
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Synonyms
Publications