jgi.p|Nanoce1779_2|391807, mRNA_2964 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|391807
Unique NamemRNA_2964
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1117
Alignment locationscaffold_7:359018..360134 +

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Properties
Property NameValue
TranscriptId391893
TrackFilteredModels2
ProteinId391807
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:359018..360134 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|391807gene_2964Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|391807mRNA_2964-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2964CDS_2964Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2964 ID=mRNA_2964|Name=jgi.p|Nanoce1779_2|391807|organism=Nannochloropsis oceanica|type=mRNA|length=1117bp
ATCTGTACCCCATCGTTGGCCCATACAGTCACAAGCCCCTTTCTTTTTCT
TTGTCGCACAACCAATGGCAAAGGCGCGCTCGCAAATTCTAAAACAACTA
ACTATTGCATTGCTTACTTTTCTACCCTACTCATACTCAGACTTGCGACC
CCTTTTCTGCTTGTGCTTACTATTACATCCCTCTGTATTCTTCCCAGCAA
GCGGCATGCCTACTTTGACCGTGTTCAGCATGAGGCGTCTCCAGGTCCTT
GCCACGAGCGTTTAAATCCTAAAAGTACGTGTGTATGAGCGGAACAAATA
GAATCGAGGGACTCGAGGGATGGTTGCACCGGAAAACCATCAACCCTGCC
TCTACTTTTGAAATCCTTCCTGCACATTGCTTTTACACCTGTCACTGTTT
TGTACGTGATTCAATCTTATTCTATGAACGTACTGCTACAAGTACTCGCC
CACTTACAGATTCATCCACCATTTCAATAGCTGTCATGGTGTATTGCCTT
CCCTTTTGTCTTCATGACGGCCATTATCACCTCCAGCACCTTTTTCTTGT
CCGTCCTCGACTTGTTTTTCATATTTGCTGCAACCTTCTCCACATCCAGC
TGGGCCAGCGACTCGGTGACCGCCTCTTTAGCTTGGCATTCATCTTTGCC
TCAAATATGGTGCATGCTTTCATCCTCGCCCTCCCAGCCGCCCAAGCTGC
CGCCTCACTGGCCTCTGCCTTTTCCCGTATCCTCTCTTCCCCTTCTCTTC
CCCAAGTAGCAGGAGCTGCTTGTTATCAATGCATACTACACTTGACAAGA
TTTGGTGACGGCCAGCATTCGTACGTATTAATTTTGCGGGCGATCAGGAT
AAGCTGACCAAATAATAGCCCGGGTGGGCTTGCTAGAAATTGCGGCCACG
AGGTGGCATGGAACAATCAGGAGAGCGGCAGCAAGCCTGTGTATGGCGGT
ATGGATACAATTAAAAGGGAGTCTGTCAAAGTGCAGAGTTATGAAAAGCC
GTATGCCTTTCGAAATGAAAATCGCGTCTCGTTCGGCCTTGACCTCCTCT
ACACCTCCGTGACCTACTCCCGGAGCGAGCCAAGAGCCTTCAGCGTCATA
AGCGAGGCACGCATGAT
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protein sequence of jgi.p|Nanoce1779_2|391807

>mRNA_2964-protein ID=mRNA_2964-protein|Name=jgi.p|Nanoce1779_2|391807|organism=Nannochloropsis oceanica|type=polypeptide|length=191bp
MSGTNRIEGLEGWLHRKTINPASTFEILPAHCFYTCHCFVRDSILFYERT
ATSTRPLTDSSTISIAVMVYCLPFCLHDGHYHLQHLFLVRPRLVFHICCN
LLHIQLGQRLGDRLFSLAFIFASNMVHAFILALPAAQAAASLASAFSRIL
SSPSLPQVAGAACYQCILHLTRFGDGQHSYVLILRAIRIS*
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mRNA from alignment at scaffold_7:359018..360134+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2964 ID=mRNA_2964|Name=jgi.p|Nanoce1779_2|391807|organism=Nannochloropsis oceanica|type=mRNA|length=1117bp|location=Sequence derived from alignment at scaffold_7:359018..360134+ (Nannochloropsis oceanica)
ATCTGTACCCCATCGTTGGCCCATACAGTCACAAGCCCCTTTCTTTTTCT
TTGTCGCACAACCAATGGCAAAGGCGCGCTCGCAAATTCTAAAACAACTA
ACTATTGCATTGCTTACTTTTCTACCCTACTCATACTCAGACTTGCGACC
CCTTTTCTGCTTGTGCTTACTATTACATCCCTCTGTATTCTTCCCAGCAA
GCGGCATGCCTACTTTGACCGTGTTCAGCATGAGGCGTCTCCAGGTCCTT
GCCACGAGCGTTTAAATCCTAAAAGTACGTGTGTATGAGCGGAACAAATA
GAATCGAGGGACTCGAGGGATGGTTGCACCGGAAAACCATCAACCCTGCC
TCTACTTTTGAAATCCTTCCTGCACATTGCTTTTACACCTGTCACTGTTT
TGTACGTGATTCAATCTTATTCTATGAACGTACTGCTACAAGTACTCGCC
CACTTACAGATTCATCCACCATTTCAATAGCTGTCATGGTGTATTGCCTT
CCCTTTTGTCTTCATGACGGCCATTATCACCTCCAGCACCTTTTTCTTGT
CCGTCCTCGACTTGTTTTTCATATTTGCTGCAACCTTCTCCACATCCAGC
TGGGCCAGCGACTCGGTGACCGCCTCTTTAGCTTGGCATTCATCTTTGCC
TCAAATATGGTGCATGCTTTCATCCTCGCCCTCCCAGCCGCCCAAGCTGC
CGCCTCACTGGCCTCTGCCTTTTCCCGTATCCTCTCTTCCCCTTCTCTTC
CCCAAGTAGCAGGAGCTGCTTGTTATCAATGCATACTACACTTGACAAGA
TTTGGTGACGGCCAGCATTCGTACGTATTAATTTTGCGGGCGATCAGGAT
AAGCTGACCAAATAATAGCCCGGGTGGGCTTGCTAGAAATTGCGGCCACG
AGGTGGCATGGAACAATCAGGAGAGCGGCAGCAAGCCTGTGTATGGCGGT
ATGGATACAATTAAAAGGGAGTCTGTCAAAGTGCAGAGTTATGAAAAGCC
GTATGCCTTTCGAAATGAAAATCGCGTCTCGTTCGGCCTTGACCTCCTCT
ACACCTCCGTGACCTACTCCCGGAGCGAGCCAAGAGCCTTCAGCGTCATA
AGCGAGGCACGCATGAT
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Coding sequence (CDS) from alignment at scaffold_7:359018..360134+

>mRNA_2964 ID=mRNA_2964|Name=jgi.p|Nanoce1779_2|391807|organism=Nannochloropsis oceanica|type=CDS|length=573bp|location=Sequence derived from alignment at scaffold_7:359018..360134+ (Nannochloropsis oceanica)
ATGAGCGGAACAAATAGAATCGAGGGACTCGAGGGATGGTTGCACCGGAA
AACCATCAACCCTGCCTCTACTTTTGAAATCCTTCCTGCACATTGCTTTT
ACACCTGTCACTGTTTTGTACGTGATTCAATCTTATTCTATGAACGTACT
GCTACAAGTACTCGCCCACTTACAGATTCATCCACCATTTCAATAGCTGT
CATGGTGTATTGCCTTCCCTTTTGTCTTCATGACGGCCATTATCACCTCC
AGCACCTTTTTCTTGTCCGTCCTCGACTTGTTTTTCATATTTGCTGCAAC
CTTCTCCACATCCAGCTGGGCCAGCGACTCGGTGACCGCCTCTTTAGCTT
GGCATTCATCTTTGCCTCAAATATGGTGCATGCTTTCATCCTCGCCCTCC
CAGCCGCCCAAGCTGCCGCCTCACTGGCCTCTGCCTTTTCCCGTATCCTC
TCTTCCCCTTCTCTTCCCCAAGTAGCAGGAGCTGCTTGTTATCAATGCAT
ACTACACTTGACAAGATTTGGTGACGGCCAGCATTCGTACGTATTAATTT
TGCGGGCGATCAGGATAAGCTGA
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Synonyms
Publications