jgi.p|Nanoce1779_2|583998, mRNA_2963 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|583998
Unique Name	mRNA_2963
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1830
Alignment location	scaffold_7:356376..358311 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	584084
Track	FilteredModels2
ProteinId	583998

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:356376..358311 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583998	gene_2963	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583998	mRNA_2963-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2963	CDS_2963	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:356376..358311-
coding sequence from alignment at scaffold_7:356376..358311-

mRNA sequence

>mRNA_2963 ID=mRNA_2963|Name=jgi.p|Nanoce1779_2|583998|organism=Nannochloropsis oceanica|type=mRNA|length=1830bp
ACAGGACCCCCAAAAACAATGCGTCCCGTTTTGCCCACGGCCCCCCCAAC
GTCACTTCCCGCCATCACGCCCGACTCGTCCACATGCTCTACCACCCCTT
TGTCAGGAGTAGCAGGCTATCGCAAGCTATCAAGTGAAAATGGTGGCACG
ATCAATGGCACGACATCCCCATCTTCACAACATCATAACAAAACCAGCAC
GCGCATTGCGTTGTTGATTTTTTTCAAAGGCCTTTTTGGCGCCGGTGTGT
TGGCGATTCCAGGGGCTTTTGAGAGCACGGGGGTCCCCTTGGGCTTGTTG
ATCTTTCTGTCTGTCTCATCATTGTGTCTTGGGACAATGCTTATGCTGCT
GCGTTGCAAGGAGCTCCTTCGCGAGGAACAAGGCCTGGTCGTGGAAAATT
ACGAGGAGCTGGCCGGAGCTATCTTCGGACCGCGTGCCTTCCGCTTCTGT
CGCTTTCTGATGGCGACCATTACGTTGATTTATACGTCTGGGTTTGTCAT
AGTAATTGGCAGCAGCTTGAACGACGTCCTCCCGGCCGTGCATCGCGCCG
TGTGGTGTGGATTGCTGTTTCCGGTGTTGACGATTCTGTCCTGGATCCCC
TTCATGAAGGACCTGTGGTTTGTGTCGCTCTTGGGATTGGGCACCTACTT
GATAGGAGTGGTGGGCTCGACGATTTACTTTGCCAATCACAACTATGACT
CTCCCACTCCTTCTCCGTGGGAGTGGAGGTGGGAGGGGGCGCCGCATTTT
TACGGTGTGGCAGTGTATTCCTTGGAAGGGATAAATTTGACACTGCCGGT
TTCGGCTTCGATGAAAAGCCTGCAAAAACCTCCTTATGTGATGACGATGG
GCGTGTGCCTCTTTGCGGGAGTCACGGCATTTTATTCCTCCTATGCGTAT
GCTGCTGGGCTAGGCTCGTGTGATATCATCATTCAATGCCTGGGTCGGGG
GGCCTTCGTCAATATAGTCAGGGTCGCCCTGGCTCTATCCCTCATAGCCA
CGCATCCTGTGTACTTAATTGTTGCTTCGGAGATTTTCGAGCGTGCCTTG
TTGGGGGATCCGCTTGCTACCGTGCCTCCAATTACAGAGGAGGGAGAGCA
GGAGGGAGGAGGGGTGATGCCGGCGGCTGGCAATCAGCTGCACGGCTGTG
GGGTTTTACAGGGGGAGGAGGATGCGAGCAGGAGAAGAACGTCCGAGGGA
ACCAACGACAGCAGCCGCCTCATCACCAATGATCCCTTCTCATTCTCTTC
CACATGCTCCCTCCTCCCGTCCTTCCTCCTCACCCAACAAGCCCAAGCTC
GCATCATCCGAGCAATCGAGGTCCTTCTCACTTGCCTCGTCGGCGCCTGT
GTTCCTAACCTAGGGGCTTTCACCTCTCTCATCGGTGCTACTTTTGTGAC
TCTCATCGGCTTCGTATTCCCTGCCGCCATGTGGTGGGCTCTGCAGAAAG
AGGATGTGCATGCCTCTTCGTGGGAGAAAGCAAGAGTGTACGGAGTGGCG
GGCCTTGTGATTCTTGCGGGACTGGTTGCAATGGTGGTGGGTACGGTAGA
GAGTGTGAGAAACATCGCGAAGTAATGAGGAAGAGGGGAGCAAGGTAAAG
GGAAGGGAGAGGTGTGTTGCTCACGAGGTGCAGTGACGAGTGTGTGGCGA
GCTGAATCTCCTGAGTTCTGCATACCTGAGAGGTTGAGGGACGAAGTGAA
AGGGGAGGGAAGGAAGGCATGGGTGCCTGACATGGGAGGAGGAAGAGAGG
ACGAGGAAAATGACAAGAGCGAGACAAAATTATGTACAGCTTTTCAAAGT
GGAAAAGTAAATCAAAATACGGGTAAGCGA

protein sequence of jgi.p|Nanoce1779_2|583998

>mRNA_2963-protein ID=mRNA_2963-protein|Name=jgi.p|Nanoce1779_2|583998|organism=Nannochloropsis oceanica|type=polypeptide|length=519bp
MRPVLPTAPPTSLPAITPDSSTCSTTPLSGVAGYRKLSSENGGTINGTTS
PSSQHHNKTSTRIALLIFFKGLFGAGVLAIPGAFESTGVPLGLLIFLSVS
SLCLGTMLMLLRCKELLREEQGLVVENYEELAGAIFGPRAFRFCRFLMAT
ITLIYTSGFVIVIGSSLNDVLPAVHRAVWCGLLFPVLTILSWIPFMKDLW
FVSLLGLGTYLIGVVGSTIYFANHNYDSPTPSPWEWRWEGAPHFYGVAVY
SLEGINLTLPVSASMKSLQKPPYVMTMGVCLFAGVTAFYSSYAYAAGLGS
CDIIIQCLGRGAFVNIVRVALALSLIATHPVYLIVASEIFERALLGDPLA
TVPPITEEGEQEGGGVMPAAGNQLHGCGVLQGEEDASRRRTSEGTNDSSR
LITNDPFSFSSTCSLLPSFLLTQQAQARIIRAIEVLLTCLVGACVPNLGA
FTSLIGATFVTLIGFVFPAAMWWALQKEDVHASSWEKARVYGVAGLVILA
GLVAMVVGTVESVRNIAK*

mRNA from alignment at scaffold_7:356376..358311-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2963 ID=mRNA_2963|Name=jgi.p|Nanoce1779_2|583998|organism=Nannochloropsis oceanica|type=mRNA|length=1936bp|location=Sequence derived from alignment at scaffold_7:356376..358311- (Nannochloropsis oceanica)
ACAGGACCCCCAAAAACAATGCGTCCCGTTTTGCCCACGGCCCCCCCAAC
GTCACTTCCCGCCATCACGCCCGACTCGTCCACATGCTCTACCACCCCTT
TGTCAGGAGTAGCAGGCTATCGCAAGCTATCAAGTGAAAATGGTGGCACG
ATCAATGGCACGACATCCCCATCTTCACAACATCATAACAAAACCAGCAC
GCGCATTGCGTTGTTGATTTTTTTCAAAGGCCTTTTTGGCGCCGGTGTGT
TGGCGATTCCAGGGGCTTTTGAGAGCACGGGGGTCCCCTTGGGCTTGTTG
ATCTTTCTGTCTGTCTCATCATTGTGTCTTGGGACAATGCTTATGCTGCT
GCGTTGCAAGGTAAGGTGAACGTAATTGAAACGGTTTTTCTTGTCGCTTG
CTTACCGTACTTTGAGCCCTCCTGTGCCAACTCATGTACTCATCCCTCCC
TCCCTCTCTCCCTTAGGAGCTCCTTCGCGAGGAACAAGGCCTGGTCGTGG
AAAATTACGAGGAGCTGGCCGGAGCTATCTTCGGACCGCGTGCCTTCCGC
TTCTGTCGCTTTCTGATGGCGACCATTACGTTGATTTATACGTCTGGGTT
TGTCATAGTAATTGGCAGCAGCTTGAACGACGTCCTCCCGGCCGTGCATC
GCGCCGTGTGGTGTGGATTGCTGTTTCCGGTGTTGACGATTCTGTCCTGG
ATCCCCTTCATGAAGGACCTGTGGTTTGTGTCGCTCTTGGGATTGGGCAC
CTACTTGATAGGAGTGGTGGGCTCGACGATTTACTTTGCCAATCACAACT
ATGACTCTCCCACTCCTTCTCCGTGGGAGTGGAGGTGGGAGGGGGCGCCG
CATTTTTACGGTGTGGCAGTGTATTCCTTGGAAGGGATAAATTTGACACT
GCCGGTTTCGGCTTCGATGAAAAGCCTGCAAAAACCTCCTTATGTGATGA
CGATGGGCGTGTGCCTCTTTGCGGGAGTCACGGCATTTTATTCCTCCTAT
GCGTATGCTGCTGGGCTAGGCTCGTGTGATATCATCATTCAATGCCTGGG
TCGGGGGGCCTTCGTCAATATAGTCAGGGTCGCCCTGGCTCTATCCCTCA
TAGCCACGCATCCTGTGTACTTAATTGTTGCTTCGGAGATTTTCGAGCGT
GCCTTGTTGGGGGATCCGCTTGCTACCGTGCCTCCAATTACAGAGGAGGG
AGAGCAGGAGGGAGGAGGGGTGATGCCGGCGGCTGGCAATCAGCTGCACG
GCTGTGGGGTTTTACAGGGGGAGGAGGATGCGAGCAGGAGAAGAACGTCC
GAGGGAACCAACGACAGCAGCCGCCTCATCACCAATGATCCCTTCTCATT
CTCTTCCACATGCTCCCTCCTCCCGTCCTTCCTCCTCACCCAACAAGCCC
AAGCTCGCATCATCCGAGCAATCGAGGTCCTTCTCACTTGCCTCGTCGGC
GCCTGTGTTCCTAACCTAGGGGCTTTCACCTCTCTCATCGGTGCTACTTT
TGTGACTCTCATCGGCTTCGTATTCCCTGCCGCCATGTGGTGGGCTCTGC
AGAAAGAGGATGTGCATGCCTCTTCGTGGGAGAAAGCAAGAGTGTACGGA
GTGGCGGGCCTTGTGATTCTTGCGGGACTGGTTGCAATGGTGGTGGGTAC
GGTAGAGAGTGTGAGAAACATCGCGAAGTAATGAGGAAGAGGGGAGCAAG
GTAAAGGGAAGGGAGAGGTGTGTTGCTCACGAGGTGCAGTGACGAGTGTG
TGGCGAGCTGAATCTCCTGAGTTCTGCATACCTGAGAGGTTGAGGGACGA
AGTGAAAGGGGAGGGAAGGAAGGCATGGGTGCCTGACATGGGAGGAGGAA
GAGAGGACGAGGAAAATGACAAGAGCGAGACAAAATTATGTACAGCTTTT
CAAAGTGGAAAAGTAAATCAAAATACGGGTAAGCGA

Coding sequence (CDS) from alignment at scaffold_7:356376..358311-

>mRNA_2963 ID=mRNA_2963|Name=jgi.p|Nanoce1779_2|583998|organism=Nannochloropsis oceanica|type=CDS|length=3114bp|location=Sequence derived from alignment at scaffold_7:356376..358311- (Nannochloropsis oceanica)
GAGCTCCTTCGCGAGGAACAAGGCCTGGTCGTGGAAAATTACGAGGAGCT
GGCCGGAGCTATCTTCGGACCGCGTGCCTTCCGCTTCTGTCGCTTTCTGA
TGGCGACCATTACGTTGATTTATACGTCTGGGTTTGTCATAGTAATTGGC
AGCAGCTTGAACGACGTCCTCCCGGCCGTGCATCGCGCCGTGTGGTGTGG
ATTGCTGTTTCCGGTGTTGACGATTCTGTCCTGGATCCCCTTCATGAAGG
ACCTGTGGTTTGTGTCGCTCTTGGGATTGGGCACCTACTTGATAGGAGTG
GTGGGCTCGACGATTTACTTTGCCAATCACAACTATGACTCTCCCACTCC
TTCTCCGTGGGAGTGGAGGTGGGAGGGGGCGCCGCATTTTTACGGTGTGG
CAGTGTATTCCTTGGAAGGGATAAATTTGACACTGCCGGTTTCGGCTTCG
ATGAAAAGCCTGCAAAAACCTCCTTATGTGATGACGATGGGCGTGTGCCT
CTTTGCGGGAGTCACGGCATTTTATTCCTCCTATGCGTATGCTGCTGGGC
TAGGCTCGTGTGATATCATCATTCAATGCCTGGGTCGGGGGGCCTTCGTC
AATATAGTCAGGGTCGCCCTGGCTCTATCCCTCATAGCCACGCATCCTGT
GTACTTAATTGTTGCTTCGGAGATTTTCGAGCGTGCCTTGTTGGGGGATC
CGCTTGCTACCGTGCCTCCAATTACAGAGGAGGGAGAGCAGGAGGGAGGA
GGGGTGATGCCGGCGGCTGGCAATCAGCTGCACGGCTGTGGGGTTTTACA
GGGGGAGGAGGATGCGAGCAGGAGAAGAACGTCCGAGGGAACCAACGACA
GCAGCCGCCTCATCACCAATGATCCCTTCTCATTCTCTTCCACATGCTCC
CTCCTCCCGTCCTTCCTCCTCACCCAACAAGCCCAAGCTCGCATCATCCG
AGCAATCGAGGTCCTTCTCACTTGCCTCGTCGGCGCCTGTGTTCCTAACC
TAGGGGCTTTCACCTCTCTCATCGGTGCTACTTTTGTGACTCTCATCGGC
TTCGTATTCCCTGCCGCCATGTGGTGGGCTCTGCAGAAAGAGGATGTGCA
TGCCTCTTCGTGGGAGAAAGCAAGAGTGTACGGAGTGGCGGGCCTTGTGA
TTCTTGCGGGACTGGTTGCAATGGTGGTGGGTACGGTAGAGAGTGTGAGA
AACATCGCGAAGTAAATGCGTCCCGTTTTGCCCACGGCCCCCCCAACGTC
ACTTCCCGCCATCACGCCCGACTCGTCCACATGCTCTACCACCCCTTTGT
CAGGAGTAGCAGGCTATCGCAAGCTATCAAGTGAAAATGGTGGCACGATC
AATGGCACGACATCCCCATCTTCACAACATCATAACAAAACCAGCACGCG
CATTGCGTTGTTGATTTTTTTCAAAGGCCTTTTTGGCGCCGGTGTGTTGG
CGATTCCAGGGGCTTTTGAGAGCACGGGGGTCCCCTTGGGCTTGTTGATC
TTTCTGTCTGTCTCATCATTGTGTCTTGGGACAATGCTTATGCTGCTGCG
TTGCAAGGAGCTCCTTCGCGAGGAACAAGGCCTGGTCGTGGAAAATTACG
AGGAGCTGGCCGGAGCTATCTTCGGACCGCGTGCCTTCCGCTTCTGTCGC
TTTCTGATGGCGACCATTACGTTGATTTATACGTCTGGGTTTGTCATAGT
AATTGGCAGCAGCTTGAACGACGTCCTCCCGGCCGTGCATCGCGCCGTGT
GGTGTGGATTGCTGTTTCCGGTGTTGACGATTCTGTCCTGGATCCCCTTC
ATGAAGGACCTGTGGTTTGTGTCGCTCTTGGGATTGGGCACCTACTTGAT
AGGAGTGGTGGGCTCGACGATTTACTTTGCCAATCACAACTATGACTCTC
CCACTCCTTCTCCGTGGGAGTGGAGGTGGGAGGGGGCGCCGCATTTTTAC
GGTGTGGCAGTGTATTCCTTGGAAGGGATAAATTTGACACTGCCGGTTTC
GGCTTCGATGAAAAGCCTGCAAAAACCTCCTTATGTGATGACGATGGGCG
TGTGCCTCTTTGCGGGAGTCACGGCATTTTATTCCTCCTATGCGTATGCT
GCTGGGCTAGGCTCGTGTGATATCATCATTCAATGCCTGGGTCGGGGGGC
CTTCGTCAATATAGTCAGGGTCGCCCTGGCTCTATCCCTCATAGCCACGC
ATCCTGTGTACTTAATTGTTGCTTCGGAGATTTTCGAGCGTGCCTTGTTG
GGGGATCCGCTTGCTACCGTGCCTCCAATTACAGAGGAGGGAGAGCAGGA
GGGAGGAGGGGTGATGCCGGCGGCTGGCAATCAGCTGCACGGCTGTGGGG
TTTTACAGGGGGAGGAGGATGCGAGCAGGAGAAGAACGTCCGAGGGAACC
AACGACAGCAGCCGCCTCATCACCAATGATCCCTTCTCATTCTCTTCCAC
ATGCTCCCTCCTCCCGTCCTTCCTCCTCACCCAACAAGCCCAAGCTCGCA
TCATCCGAGCAATCGAGGTCCTTCTCACTTGCCTCGTCGGCGCCTGTGTT
CCTAACCTAGGGGCTTTCACCTCTCTCATCGGTGCTACTTTTGTGACTCT
CATCGGCTTCGTATTCCCTGCCGCCATGTGGTGGGCTCTGCAGAAAGAGG
ATGTGCATGCCTCTTCGTGGGAGAAAGCAAGAGTGTACGGAGTGGCGGGC
CTTGTGATTCTTGCGGGACTGGTTGCAATGGTGGTGGGTACGGTAGAGAG
TGTGAGAAACATCGCGAAGTAAATGCGTCCCGTTTTGCCCACGGCCCCCC
CAACGTCACTTCCCGCCATCACGCCCGACTCGTCCACATGCTCTACCACC
CCTTTGTCAGGAGTAGCAGGCTATCGCAAGCTATCAAGTGAAAATGGTGG
CACGATCAATGGCACGACATCCCCATCTTCACAACATCATAACAAAACCA
GCACGCGCATTGCGTTGTTGATTTTTTTCAAAGGCCTTTTTGGCGCCGGT
GTGTTGGCGATTCCAGGGGCTTTTGAGAGCACGGGGGTCCCCTTGGGCTT
GTTGATCTTTCTGTCTGTCTCATCATTGTGTCTTGGGACAATGCTTATGC
TGCTGCGTTGCAAG

Synonyms

Publications