jgi.p|Nanoce1779_2|583996, mRNA_2962 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|583996
Unique Name	mRNA_2962
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1655
Alignment location	scaffold_7:354421..356075 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	584082
Track	FilteredModels2
ProteinId	583996

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:354421..356075 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583996	gene_2962	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583996	mRNA_2962-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2962	CDS_2962	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:354421..356075+
coding sequence from alignment at scaffold_7:354421..356075+

mRNA sequence

>mRNA_2962 ID=mRNA_2962|Name=jgi.p|Nanoce1779_2|583996|organism=Nannochloropsis oceanica|type=mRNA|length=1655bp
GGGGTGGCCATGTTGTTGCTTTTTAGTTGTCGTTGATTGAGTTGCTAATA
ATTAGTTGTCGTCCGGATGATGGACAGACGATTGAGTAACCGTCCTCTCT
CCCTTTCTTCCTCCTCCTTTCTTCGCCCCCACCACAGCCGCCGTGTCCCT
GACGAAAAACTGGTTGTTATGGCGGACTTCTGGCGTTCCAAGGGCCTCTC
CTCTAAATCCCAACTTGACAAGCTCGTCGCCCTAGCTCACAGCCGCAAGC
TCTTTTCTGACCCCCCCCGAATCGACCTGAAACTCCAGCAACTCCGCTCC
ATGCTCCCCGGCGCCGACGTTGTGAAAATCGTCAGCAACGCCCCCAACAT
CCTCGTATACGACCTCATACTCTCCATCCCCCCCAAACTCCACGCCCTCC
AACGCCTCCTTCCCGGCTGCGACGTTGTCAAGGTCATCGTCTCCTCCCCC
CATCTCCTCACCTTCAACATCGAATCAAACATCGCCCCCAAGGTCCAGCA
GCTCCGCCGCCTTCTCCCCGGGGCAAACATTGTCAAAATCATCTCCTCCG
CGCCCAACCTTCTTTCCTACGACATCGACGGCTCTCTTTCTCACAAGGTG
CACGCACTCTTTCATCTACTTCCGGGCGCAGATGTGGTCAAGCTCATCTC
CTACGCCCCTACCTTACTCTATCACGACACGGAGGCAAGCATTGCGCCGA
AGCTACGAGCGCTTGCTCTGCTGCTGCCGGGGTGCGACGTTGTTAAGATG
GTGTGTGCAGCTCCTCCCCTCCTGTGCTCCGATATTGAGGGGAGTATCGC
GCGGAAATTGCTTTGGATGTGCGAGATGGTGAATGGGACAGAAAAGGAGT
TGCACGAAAAGATCGAGAGTAACCCTCGACTGCTAACGTGCGGGTATGGC
GTCGTCTTCGGGCGGTTGGAGTTCATCGCCCAGGACAAGGAGGAGAATGT
GGCAGTGAAGGAGCTGAGGTCTGTGCTGTTGGCGCCGGTGTCAAAGTTTG
TGAAAATGTGGCCGGGATATCCGATCTATCTGGCGCAGCAGTTGGTGAAT
GCTGAGTGGGCGCTGGCGAGGGGGCGGGATGTGCAAGAGGTGCTCAGGAG
AGGGGCGAAGCACCTGGAGAAAGAGTACGGAAACTGTTTGAGGAGCGTCG
TCAACAAAGATTAGAAGAGAAAAGAACGAAGGACGGGCAGAAGAGAGGGA
AGGAGGGAAGAGAGACAAATGTTCTTTATGAGCACATCGTAAGCTAAAAG
ACTGTATAATTCAAAAGTATAGGAGGGAGGGGGAAGGAAGGAAGGAAGGG
AGGGGCGTGATAAGAAGTGAGAGTCAGTAATATACGTGTGTTCACGATGC
TCGCCCCTAGAGGAAGCAGCATCTGTATTTACATGATATGGTGCATTCAA
TTTATTTGACACCCAGCGGTCATCGTGCTCCAATTGACACGAATTCAATG
CATGACTTAAAAAAAAGGGGAAAAGAAAAAAGGAAGAGAAACAGAGACAG
AGAGAGACAGAGAGACAAAGAATGTGTGTGTGTGTGAGAGAGAGACAGAG
AGATAGAGATGGACATAGAGAGAGAGAGAGAGACAGACAGTGAGAGACAG
ACAGAGAGAGAGAGAGAGAAAGAGACAAAGAGAGAGAGAGAGAGAGAGAG
AGAGA

protein sequence of jgi.p|Nanoce1779_2|583996

>mRNA_2962-protein ID=mRNA_2962-protein|Name=jgi.p|Nanoce1779_2|583996|organism=Nannochloropsis oceanica|type=polypeptide|length=366bp
MMDRRLSNRPLSLSSSSFLRPHHSRRVPDEKLVVMADFWRSKGLSSKSQL
DKLVALAHSRKLFSDPPRIDLKLQQLRSMLPGADVVKIVSNAPNILVYDL
ILSIPPKLHALQRLLPGCDVVKVIVSSPHLLTFNIESNIAPKVQQLRRLL
PGANIVKIISSAPNLLSYDIDGSLSHKVHALFHLLPGADVVKLISYAPTL
LYHDTEASIAPKLRALALLLPGCDVVKMVCAAPPLLCSDIEGSIARKLLW
MCEMVNGTEKELHEKIESNPRLLTCGYGVVFGRLEFIAQDKEENVAVKEL
RSVLLAPVSKFVKMWPGYPIYLAQQLVNAEWALARGRDVQEVLRRGAKHL
EKEYGNCLRSVVNKD*

mRNA from alignment at scaffold_7:354421..356075+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2962 ID=mRNA_2962|Name=jgi.p|Nanoce1779_2|583996|organism=Nannochloropsis oceanica|type=mRNA|length=1655bp|location=Sequence derived from alignment at scaffold_7:354421..356075+ (Nannochloropsis oceanica)
GGGGTGGCCATGTTGTTGCTTTTTAGTTGTCGTTGATTGAGTTGCTAATA
ATTAGTTGTCGTCCGGATGATGGACAGACGATTGAGTAACCGTCCTCTCT
CCCTTTCTTCCTCCTCCTTTCTTCGCCCCCACCACAGCCGCCGTGTCCCT
GACGAAAAACTGGTTGTTATGGCGGACTTCTGGCGTTCCAAGGGCCTCTC
CTCTAAATCCCAACTTGACAAGCTCGTCGCCCTAGCTCACAGCCGCAAGC
TCTTTTCTGACCCCCCCCGAATCGACCTGAAACTCCAGCAACTCCGCTCC
ATGCTCCCCGGCGCCGACGTTGTGAAAATCGTCAGCAACGCCCCCAACAT
CCTCGTATACGACCTCATACTCTCCATCCCCCCCAAACTCCACGCCCTCC
AACGCCTCCTTCCCGGCTGCGACGTTGTCAAGGTCATCGTCTCCTCCCCC
CATCTCCTCACCTTCAACATCGAATCAAACATCGCCCCCAAGGTCCAGCA
GCTCCGCCGCCTTCTCCCCGGGGCAAACATTGTCAAAATCATCTCCTCCG
CGCCCAACCTTCTTTCCTACGACATCGACGGCTCTCTTTCTCACAAGGTG
CACGCACTCTTTCATCTACTTCCGGGCGCAGATGTGGTCAAGCTCATCTC
CTACGCCCCTACCTTACTCTATCACGACACGGAGGCAAGCATTGCGCCGA
AGCTACGAGCGCTTGCTCTGCTGCTGCCGGGGTGCGACGTTGTTAAGATG
GTGTGTGCAGCTCCTCCCCTCCTGTGCTCCGATATTGAGGGGAGTATCGC
GCGGAAATTGCTTTGGATGTGCGAGATGGTGAATGGGACAGAAAAGGAGT
TGCACGAAAAGATCGAGAGTAACCCTCGACTGCTAACGTGCGGGTATGGC
GTCGTCTTCGGGCGGTTGGAGTTCATCGCCCAGGACAAGGAGGAGAATGT
GGCAGTGAAGGAGCTGAGGTCTGTGCTGTTGGCGCCGGTGTCAAAGTTTG
TGAAAATGTGGCCGGGATATCCGATCTATCTGGCGCAGCAGTTGGTGAAT
GCTGAGTGGGCGCTGGCGAGGGGGCGGGATGTGCAAGAGGTGCTCAGGAG
AGGGGCGAAGCACCTGGAGAAAGAGTACGGAAACTGTTTGAGGAGCGTCG
TCAACAAAGATTAGAAGAGAAAAGAACGAAGGACGGGCAGAAGAGAGGGA
AGGAGGGAAGAGAGACAAATGTTCTTTATGAGCACATCGTAAGCTAAAAG
ACTGTATAATTCAAAAGTATAGGAGGGAGGGGGAAGGAAGGAAGGAAGGG
AGGGGCGTGATAAGAAGTGAGAGTCAGTAATATACGTGTGTTCACGATGC
TCGCCCCTAGAGGAAGCAGCATCTGTATTTACATGATATGGTGCATTCAA
TTTATTTGACACCCAGCGGTCATCGTGCTCCAATTGACACGAATTCAATG
CATGACTTAAAAAAAAGGGGAAAAGAAAAAAGGAAGAGAAACAGAGACAG
AGAGAGACAGAGAGACAAAGAATGTGTGTGTGTGTGAGAGAGAGACAGAG
AGATAGAGATGGACATAGAGAGAGAGAGAGAGACAGACAGTGAGAGACAG
ACAGAGAGAGAGAGAGAGAAAGAGACAAAGAGAGAGAGAGAGAGAGAGAG
AGAGA

Coding sequence (CDS) from alignment at scaffold_7:354421..356075+

>mRNA_2962 ID=mRNA_2962|Name=jgi.p|Nanoce1779_2|583996|organism=Nannochloropsis oceanica|type=CDS|length=1098bp|location=Sequence derived from alignment at scaffold_7:354421..356075+ (Nannochloropsis oceanica)
ATGATGGACAGACGATTGAGTAACCGTCCTCTCTCCCTTTCTTCCTCCTC
CTTTCTTCGCCCCCACCACAGCCGCCGTGTCCCTGACGAAAAACTGGTTG
TTATGGCGGACTTCTGGCGTTCCAAGGGCCTCTCCTCTAAATCCCAACTT
GACAAGCTCGTCGCCCTAGCTCACAGCCGCAAGCTCTTTTCTGACCCCCC
CCGAATCGACCTGAAACTCCAGCAACTCCGCTCCATGCTCCCCGGCGCCG
ACGTTGTGAAAATCGTCAGCAACGCCCCCAACATCCTCGTATACGACCTC
ATACTCTCCATCCCCCCCAAACTCCACGCCCTCCAACGCCTCCTTCCCGG
CTGCGACGTTGTCAAGGTCATCGTCTCCTCCCCCCATCTCCTCACCTTCA
ACATCGAATCAAACATCGCCCCCAAGGTCCAGCAGCTCCGCCGCCTTCTC
CCCGGGGCAAACATTGTCAAAATCATCTCCTCCGCGCCCAACCTTCTTTC
CTACGACATCGACGGCTCTCTTTCTCACAAGGTGCACGCACTCTTTCATC
TACTTCCGGGCGCAGATGTGGTCAAGCTCATCTCCTACGCCCCTACCTTA
CTCTATCACGACACGGAGGCAAGCATTGCGCCGAAGCTACGAGCGCTTGC
TCTGCTGCTGCCGGGGTGCGACGTTGTTAAGATGGTGTGTGCAGCTCCTC
CCCTCCTGTGCTCCGATATTGAGGGGAGTATCGCGCGGAAATTGCTTTGG
ATGTGCGAGATGGTGAATGGGACAGAAAAGGAGTTGCACGAAAAGATCGA
GAGTAACCCTCGACTGCTAACGTGCGGGTATGGCGTCGTCTTCGGGCGGT
TGGAGTTCATCGCCCAGGACAAGGAGGAGAATGTGGCAGTGAAGGAGCTG
AGGTCTGTGCTGTTGGCGCCGGTGTCAAAGTTTGTGAAAATGTGGCCGGG
ATATCCGATCTATCTGGCGCAGCAGTTGGTGAATGCTGAGTGGGCGCTGG
CGAGGGGGCGGGATGTGCAAGAGGTGCTCAGGAGAGGGGCGAAGCACCTG
GAGAAAGAGTACGGAAACTGTTTGAGGAGCGTCGTCAACAAAGATTAG

Synonyms

Publications