jgi.p|Nanoce1779_2|583987, mRNA_2961 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583987
Unique NamemRNA_2961
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length677
Alignment locationscaffold_7:350098..351521 +

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Properties
Property NameValue
TranscriptId584073
TrackFilteredModels2
ProteinId583987
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:350098..351521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583987gene_2961Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583987mRNA_2961-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2961CDS_2961Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2961 ID=mRNA_2961|Name=jgi.p|Nanoce1779_2|583987|organism=Nannochloropsis oceanica|type=mRNA|length=677bp
TGGGCCGGAGAGATGAATTTGGGCCTCGGTTCGCAGCTTGTTTCAGAACT
CAATCCCTGTCATACACACAAACAACCACAGTAACGACAAACCAAAGGTC
ATGTCTGACGCATCACCGTCTACCACGACGACGGCAGCGCAAGGCCCCGG
TGGCCCCACAGCGTCCGAGGCCAAGCCTGCTCAGAACAAAAAAGTGACTG
AGTTCCTTAAAACCATCTTGGGCCGCCCCGTGGTGGTTAAGCTGAACTCG
GGCGTGGACTATCGAGGCGTGCTGGCCTGTTTGGACAGCTTCATGAATAT
TGCCATGGAGCAAACGGAGGAGTACGTGCATGGACAGCTGAAGGCTAAGT
ACGGTGATTGTTTCATTCGCGGAAATAATGTTTTGTATATCTCTACGCAA
AAGCGGAGGTAGCATCTTCTCCCCTTAAATGGTGCATTTGAGAGAAGGGC
GGGCACTAAGTGATGGGCACGTAAAGCTCATTGAACGGAGGGGAGAGAAG
CAAGTCTATGTTTATTAAAGAGCGCGTGCAATCACCAATACGGGCCACCG
GCCAAAGGACAAAGAGGGAAAGTATAGAAGTAGGGATTATTGTTTGTTTT
CCCGCTTTTGATCGCGGTGCAAAGTATGGCTGCCGGTCCTGCGTTGTAAT
AAAATAACAACAGATACAAACCCAAAA
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protein sequence of jgi.p|Nanoce1779_2|583987

>mRNA_2961-protein ID=mRNA_2961-protein|Name=jgi.p|Nanoce1779_2|583987|organism=Nannochloropsis oceanica|type=polypeptide|length=104bp
MSDASPSTTTTAAQGPGGPTASEAKPAQNKKVTEFLKTILGRPVVVKLNS
GVDYRGVLACLDSFMNIAMEQTEEYVHGQLKAKYGDCFIRGNNVLYISTQ
KRR*
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mRNA from alignment at scaffold_7:350098..351521+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2961 ID=mRNA_2961|Name=jgi.p|Nanoce1779_2|583987|organism=Nannochloropsis oceanica|type=mRNA|length=1424bp|location=Sequence derived from alignment at scaffold_7:350098..351521+ (Nannochloropsis oceanica)
TGGGCCGGAGAGATGAATTTGGGCCTCGGTTCGCAGCTTGTTTCAGAACT
CAATCCCTGTCATACACACAAACAACCACAGTAACGACAAACCAAAGGTC
ATGTCTGACGCATCACCGTCTACCACGACGACGGCAGCGCAAGGCCCCGG
TGGCCCCACAGCGTCCGAGGCCAAGCCTGCTCAGGTGAGGAAGCAATGGA
AGAATTGTGATGATGATGCGGATTGGAGGATCGAATGACACGTCTGTGTG
AGCTAGAAGTGCGCTAGGCAGCCAATTTCACCCAGTAAGGACAACCACGA
TCAAATCATGTGGTGGTGGTCGTGCAGTCGCTGTATTGGCATGGTGCCTC
CAAGCATGCCGTTCATTTCTGCTCCCCCTAGCTCTCTCCCTCACACCCTT
CCTCCCTCGTTTTCCAAACCATTACCACCTGCCCCGACAGAACAAAAAAG
TGACTGAGTTCCTTAAAACCATCTTGGGCCGCCCCGTGGTGGTTAAGCTG
AACTCGGGCGTGGACTATCGAGGTACGTTGGGCTATTAGGGTGAGGGTGG
GGGCGAGGTCGGGCATGTGGCGGGTGCAGCAAAGCCCCAGGTGTGCATCG
AAAAGAATAAAGATGCGATGGACAACAGCTTGCTGTCCATCAATGTGTGC
TGGCACAGATTCTTTGAGAAGGTAGCAGGTCGTCACCGTCTTATACTCTC
CCTATCAACCACTCTTCCTGCCTTTGAGTTAAGGCGTGCTGGCCTGTTTG
GACAGCTTCATGAATATTGCCATGGAGCAAACGGAGGAGTACGTGCATGG
ACAGCTGAAGGCTAAGTACGGTGATTGTTTCATTCGCGGAAATAATGGTA
CGTTTATTTTTCTTAGCAGGGATGTGAGTGGATGCACTTATAGTACATAC
TTGCAAGGCAGCCTTCTTCCGCGCCTTGCATCGGCCTCACGTCCTTGATT
GAAATTTAGTCAATTTCGCCACATGCCTACAGGTGCGACAAATATAGTGC
ATCGTGCGTCTTCGTGGGCGTGTTGAATGTTTCTTGAGGCTTTCATGCCT
GAAAATCCGTTTTTAAACCTCCTTTTAACCCTCACCCTTTCATCCTCCGC
CATTTGGACCCCCAACCTTCAACACAGTTTTGTATATCTCTACGCAAAAG
CGGAGGTAGCATCTTCTCCCCTTAAATGGTGCATTTGAGAGAAGGGCGGG
CACTAAGTGATGGGCACGTAAAGCTCATTGAACGGAGGGGAGAGAAGCAA
GTCTATGTTTATTAAAGAGCGCGTGCAATCACCAATACGGGCCACCGGCC
AAAGGACAAAGAGGGAAAGTATAGAAGTAGGGATTATTGTTTGTTTTCCC
GCTTTTGATCGCGGTGCAAAGTATGGCTGCCGGTCCTGCGTTGTAATAAA
ATAACAACAGATACAAACCCAAAA
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Coding sequence (CDS) from alignment at scaffold_7:350098..351521+

>mRNA_2961 ID=mRNA_2961|Name=jgi.p|Nanoce1779_2|583987|organism=Nannochloropsis oceanica|type=CDS|length=1248bp|location=Sequence derived from alignment at scaffold_7:350098..351521+ (Nannochloropsis oceanica)
ATGTCTGACGCATCACCGTCTACCACGACGACGGCAGCGCAAGGCCCCGG
TGGCCCCACAGCGTCCGAGGCCAAGCCTGCTCAGAACAAAAAAGTGACTG
AGTTCCTTAAAACCATCTTGGGCCGCCCCGTGGTGGTTAAGCTGAACTCG
GGCGTGGACTATCGAGGCGTGCTGGCCTGTTTGGACAGCTTCATGAATAT
TGCCATGGAGCAAACGGAGGAGTACGTGCATGGACAGCTGAAGGCTAAGT
ACGGTGATTGTTTCATTCGCGGAAATAATGTTTTGTATATCTCTACGCAA
AAGCGGAGGTAGATGTCTGACGCATCACCGTCTACCACGACGACGGCAGC
GCAAGGCCCCGGTGGCCCCACAGCGTCCGAGGCCAAGCCTGCTCAGAACA
AAAAAGTGACTGAGTTCCTTAAAACCATCTTGGGCCGCCCCGTGGTGGTT
AAGCTGAACTCGGGCGTGGACTATCGAGGCGTGCTGGCCTGTTTGGACAG
CTTCATGAATATTGCCATGGAGCAAACGGAGGAGTACGTGCATGGACAGC
TGAAGGCTAAGTACGGTGATTGTTTCATTCGCGGAAATAATGTTTTGTAT
ATCTCTACGCAAAAGCGGAGGTAGATGTCTGACGCATCACCGTCTACCAC
GACGACGGCAGCGCAAGGCCCCGGTGGCCCCACAGCGTCCGAGGCCAAGC
CTGCTCAGAACAAAAAAGTGACTGAGTTCCTTAAAACCATCTTGGGCCGC
CCCGTGGTGGTTAAGCTGAACTCGGGCGTGGACTATCGAGGCGTGCTGGC
CTGTTTGGACAGCTTCATGAATATTGCCATGGAGCAAACGGAGGAGTACG
TGCATGGACAGCTGAAGGCTAAGTACGGTGATTGTTTCATTCGCGGAAAT
AATGTTTTGTATATCTCTACGCAAAAGCGGAGGTAGATGTCTGACGCATC
ACCGTCTACCACGACGACGGCAGCGCAAGGCCCCGGTGGCCCCACAGCGT
CCGAGGCCAAGCCTGCTCAGAACAAAAAAGTGACTGAGTTCCTTAAAACC
ATCTTGGGCCGCCCCGTGGTGGTTAAGCTGAACTCGGGCGTGGACTATCG
AGGCGTGCTGGCCTGTTTGGACAGCTTCATGAATATTGCCATGGAGCAAA
CGGAGGAGTACGTGCATGGACAGCTGAAGGCTAAGTACGGTGATTGTTTC
ATTCGCGGAAATAATGTTTTGTATATCTCTACGCAAAAGCGGAGGTAG
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Synonyms
Publications