jgi.p|Nanoce1779_2|622927, mRNA_2960 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|622927
Unique NamemRNA_2960
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length393
Alignment locationscaffold_7:349332..349836 -

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Properties
Property NameValue
TranscriptId623013
TrackFilteredModels2
ProteinId622927
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:349332..349836 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|622927gene_2960Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|622927mRNA_2960-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2960CDS_2960Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2960 ID=mRNA_2960|Name=jgi.p|Nanoce1779_2|622927|organism=Nannochloropsis oceanica|type=mRNA|length=393bp
ATGGCCTCAGGCGGAGCCGTGCCTTTTTGCGATGAATGCCATGCACTACT
GGATCTGCCGGATGAGGACCCAATTGTCTGCCGCATCTGTAAATTTTCCA
CGACCTTTGACGAGTTGGGTCAAGTAGAAATAATCACCACCAGTGCCGAG
AAACCTGCGCCGCGCTGGTACCAGGAGCTGGCAGCGGCTGCCAAACCAGA
TGGGGTATGCGAGGATAGAAACGACGAGGGAGGGGACAGCCGGCATGCCA
AGGTAGACGAGCCTTGCCCGAAGTGTGGCCATCCAGAGATGAGCTTTTAC
ACCATGCAGCTGCGTTCGGCGGATGAGGGGTCGACGGTGTTTTATGAGTG
TCTAAGCAAGAAGTGTGGACACAAGTATTCACAAAATAACTAA
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protein sequence of jgi.p|Nanoce1779_2|622927

>mRNA_2960-protein ID=mRNA_2960-protein|Name=jgi.p|Nanoce1779_2|622927|organism=Nannochloropsis oceanica|type=polypeptide|length=131bp
MASGGAVPFCDECHALLDLPDEDPIVCRICKFSTTFDELGQVEIITTSAE
KPAPRWYQELAAAAKPDGVCEDRNDEGGDSRHAKVDEPCPKCGHPEMSFY
TMQLRSADEGSTVFYECLSKKCGHKYSQNN*
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mRNA from alignment at scaffold_7:349332..349836-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2960 ID=mRNA_2960|Name=jgi.p|Nanoce1779_2|622927|organism=Nannochloropsis oceanica|type=mRNA|length=505bp|location=Sequence derived from alignment at scaffold_7:349332..349836- (Nannochloropsis oceanica)
ATGGCCTCAGGCGGAGCCGTGCCTTTTTGCGATGAATGCCATGCACTACT
GGATCTGCCGGATGAGGACCCAATTGTCTGCCGCATCTGTAAATTTTCCA
CGACCTTTGACGGTACGTTTCCAGCCTCAAAACTCCGTCAACTCCATACC
CGTTGCTTCCCACCCTGCCACATCGAAGCCAAACAGCTCACTACATACAT
CTATTCATCTTCTTTCAAACAAAGAGTTGGGTCAAGTAGAAATAATCACC
ACCAGTGCCGAGAAACCTGCGCCGCGCTGGTACCAGGAGCTGGCAGCGGC
TGCCAAACCAGATGGGGTATGCGAGGATAGAAACGACGAGGGAGGGGACA
GCCGGCATGCCAAGGTAGACGAGCCTTGCCCGAAGTGTGGCCATCCAGAG
ATGAGCTTTTACACCATGCAGCTGCGTTCGGCGGATGAGGGGTCGACGGT
GTTTTATGAGTGTCTAAGCAAGAAGTGTGGACACAAGTATTCACAAAATA
ACTAA
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Coding sequence (CDS) from alignment at scaffold_7:349332..349836-

>mRNA_2960 ID=mRNA_2960|Name=jgi.p|Nanoce1779_2|622927|organism=Nannochloropsis oceanica|type=CDS|length=786bp|location=Sequence derived from alignment at scaffold_7:349332..349836- (Nannochloropsis oceanica)
AGTTGGGTCAAGTAGAAATAATCACCACCAGTGCCGAGAAACCTGCGCCG
CGCTGGTACCAGGAGCTGGCAGCGGCTGCCAAACCAGATGGGGTATGCGA
GGATAGAAACGACGAGGGAGGGGACAGCCGGCATGCCAAGGTAGACGAGC
CTTGCCCGAAGTGTGGCCATCCAGAGATGAGCTTTTACACCATGCAGCTG
CGTTCGGCGGATGAGGGGTCGACGGTGTTTTATGAGTGTCTAAGCAAGAA
GTGTGGACACAAGTATTCACAAAATAACTAAATGGCCTCAGGCGGAGCCG
TGCCTTTTTGCGATGAATGCCATGCACTACTGGATCTGCCGGATGAGGAC
CCAATTGTCTGCCGCATCTGTAAATTTTCCACGACCTTTGACGAGTTGGG
TCAAGTAGAAATAATCACCACCAGTGCCGAGAAACCTGCGCCGCGCTGGT
ACCAGGAGCTGGCAGCGGCTGCCAAACCAGATGGGGTATGCGAGGATAGA
AACGACGAGGGAGGGGACAGCCGGCATGCCAAGGTAGACGAGCCTTGCCC
GAAGTGTGGCCATCCAGAGATGAGCTTTTACACCATGCAGCTGCGTTCGG
CGGATGAGGGGTCGACGGTGTTTTATGAGTGTCTAAGCAAGAAGTGTGGA
CACAAGTATTCACAAAATAACTAAATGGCCTCAGGCGGAGCCGTGCCTTT
TTGCGATGAATGCCATGCACTACTGGATCTGCCGGATGAGGACCCAATTG
TCTGCCGCATCTGTAAATTTTCCACGACCTTTGACG
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Synonyms
Publications