jgi.p|Nanoce1779_2|576847, mRNA_296 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576847
Unique NamemRNA_296
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1123
Alignment locationscaffold_3:729247..730485 -

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Properties
Property NameValue
TranscriptId576933
TrackFilteredModels2
ProteinId576847
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:729247..730485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576847gene_296Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576847mRNA_296-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_296CDS_296Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_296 ID=mRNA_296|Name=jgi.p|Nanoce1779_2|576847|organism=Nannochloropsis oceanica|type=mRNA|length=1123bp
ACAGGCATGGCAACGCTGCGGTCGACGACGACGACGCGCCTCAGGCACTG
CGCCGACTGCGACCAGCACTATGAAACGCGGGATCGACTCTGCCCGACGT
GTGGCGCCGCCTTTGTTCCCACAGCAAATCCGTCAGCGCAACCTGACCCG
TGGTTTGCAGGAGGAGGCTACCCAGGGGACGACCTGCCAATTTCCAGACC
AGAGAGAGAAGCACAACAGCAATTTGGTGATGCAGCGTGGCTCGAGGGTC
GTCCAGACATAAATAATCTACCAGAGGCGATGCAGCAGCGCATACTTGAG
CTGATCAATGGCCATGGCCTTGATGTAGAAGGCAGGGAGGGCGGCCCAGG
CGAGCGGAATGGGTTGAGCGAGGAGGACATTGCCAAGCTCCCTCTCTCCC
AATTACACACCACTTCCTCCATGCTCATGTCTGTGAACATAACCTTGGAG
TCGGGTGACGGCCAGCCGCCTCTCACGATGGAGTGCATCCCCGGCTCATT
TTCTCCGATCCCGTCGAAGGGCTTCCAATTTCAATTAATCCAAGCGGACC
CCTTACTGGCTGACGTGTTGCCGTTGCGCAACAAGGGAGCATGTCAAGGC
AAGGTGCTCGTTACACAGAGGGGGAAACAGACGTTTGGGGCCATGCTGGT
GGCGGCAAGAGCAGCGGGGGCTCTTGGTGTGGTGGTGATTAATTCAGTAT
CGTTGTGGCCGTACCTCATGCGAGATGGGAAAGGCGAGGCTAAGATTGAG
GCAGGGAAGGAGGAAGGACAAATTGCGGACTGCTTTATTGTCATGGTTTC
CCAAGCTCATGGGGAGGAGCTTTTGCGTCGCTTGGCTTCTCCTGCTCCTG
TTGATACAACAACTACTACCGTTAATGCTGCTGCTTTGACTGGTTGTCTG
GCGGTTACGCATGTGGAAAGGGAATGCTTGATTTGCATACAGGCTTTCGA
GGAGAGTGACACTATATTACGGCTACCATGTCAACATAACTACCACGAGG
AATGTGCGCGAAAATGGCTGAGCCTGCGAAGGACTTGCCCGGCCTGTCGG
ATTGAGGTGAAGCCTCGGAGGGAGGGGTGATGCCTAAAAAATAAAGCAAG
ATGTAAATGTGTTGAGAAACTAC
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protein sequence of jgi.p|Nanoce1779_2|576847

>mRNA_296-protein ID=mRNA_296-protein|Name=jgi.p|Nanoce1779_2|576847|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp
MATLRSTTTTRLRHCADCDQHYETRDRLCPTCGAAFVPTANPSAQPDPWF
AGGGYPGDDLPISRPEREAQQQFGDAAWLEGRPDINNLPEAMQQRILELI
NGHGLDVEGREGGPGERNGLSEEDIAKLPLSQLHTTSSMLMSVNITLESG
DGQPPLTMECIPGSFSPIPSKGFQFQLIQADPLLADVLPLRNKGACQGKV
LVTQRGKQTFGAMLVAARAAGALGVVVINSVSLWPYLMRDGKGEAKIEAG
KEEGQIADCFIVMVSQAHGEELLRRLASPAPVDTTTTTVNAAALTGCLAV
THVERECLICIQAFEESDTILRLPCQHNYHEECARKWLSLRRTCPACRIE
VKPRREG*
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mRNA from alignment at scaffold_3:729247..730485-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_296 ID=mRNA_296|Name=jgi.p|Nanoce1779_2|576847|organism=Nannochloropsis oceanica|type=mRNA|length=1239bp|location=Sequence derived from alignment at scaffold_3:729247..730485- (Nannochloropsis oceanica)
ACAGGCATGGCAACGCTGCGGTCGACGACGACGACGCGCCTCAGGCACTG
CGCCGACTGCGACCAGCACTATGAAACGCGGGATCGACTCTGCCCGACGT
GTGGCGCCGCCTTTGTTCCCACAGCAAATCCGTCAGCGCAACCTGACCCG
TGGTTTGCAGGAGGAGGCTACCCAGGGGACGACCTGCCAATTTCCAGACC
AGAGAGAGAAGCACAACAGCAATTTGGTGATGCAGCGTGGCTCGAGGGTC
GTCCAGACATAAATAATCTACCAGAGGCGATGCAGCAGCGCATACTTGAG
CTGATCAATGGCCATGGCCTTGATGTAGAAGGCAGGGAGGGCGGCCCAGG
CGAGCGGAATGGGTTGAGCGAGGAGGACATTGCCAAGCTCCCTCTCTCCC
AATTACACACCACTTCCTCCATGCTCATGTCTGGTACGTTAGTCTGTAGA
GCGTGCTTGCGTCTGAGTGTCGGAAGTGAAAGTGCCCTTAACAGACAAAC
GAGTTACCCTCCCATTCTCTTCTTCCATTCCCTGCACCTCCTCTCACAGT
GAACATAACCTTGGAGTCGGGTGACGGCCAGCCGCCTCTCACGATGGAGT
GCATCCCCGGCTCATTTTCTCCGATCCCGTCGAAGGGCTTCCAATTTCAA
TTAATCCAAGCGGACCCCTTACTGGCTGACGTGTTGCCGTTGCGCAACAA
GGGAGCATGTCAAGGCAAGGTGCTCGTTACACAGAGGGGGAAACAGACGT
TTGGGGCCATGCTGGTGGCGGCAAGAGCAGCGGGGGCTCTTGGTGTGGTG
GTGATTAATTCAGTATCGTTGTGGCCGTACCTCATGCGAGATGGGAAAGG
CGAGGCTAAGATTGAGGCAGGGAAGGAGGAAGGACAAATTGCGGACTGCT
TTATTGTCATGGTTTCCCAAGCTCATGGGGAGGAGCTTTTGCGTCGCTTG
GCTTCTCCTGCTCCTGTTGATACAACAACTACTACCGTTAATGCTGCTGC
TTTGACTGGTTGTCTGGCGGTTACGCATGTGGAAAGGGAATGCTTGATTT
GCATACAGGCTTTCGAGGAGAGTGACACTATATTACGGCTACCATGTCAA
CATAACTACCACGAGGAATGTGCGCGAAAATGGCTGAGCCTGCGAAGGAC
TTGCCCGGCCTGTCGGATTGAGGTGAAGCCTCGGAGGGAGGGGTGATGCC
TAAAAAATAAAGCAAGATGTAAATGTGTTGAGAAACTAC
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Coding sequence (CDS) from alignment at scaffold_3:729247..730485-

>mRNA_296 ID=mRNA_296|Name=jgi.p|Nanoce1779_2|576847|organism=Nannochloropsis oceanica|type=CDS|length=2148bp|location=Sequence derived from alignment at scaffold_3:729247..730485- (Nannochloropsis oceanica)
TGAACATAACCTTGGAGTCGGGTGACGGCCAGCCGCCTCTCACGATGGAG
TGCATCCCCGGCTCATTTTCTCCGATCCCGTCGAAGGGCTTCCAATTTCA
ATTAATCCAAGCGGACCCCTTACTGGCTGACGTGTTGCCGTTGCGCAACA
AGGGAGCATGTCAAGGCAAGGTGCTCGTTACACAGAGGGGGAAACAGACG
TTTGGGGCCATGCTGGTGGCGGCAAGAGCAGCGGGGGCTCTTGGTGTGGT
GGTGATTAATTCAGTATCGTTGTGGCCGTACCTCATGCGAGATGGGAAAG
GCGAGGCTAAGATTGAGGCAGGGAAGGAGGAAGGACAAATTGCGGACTGC
TTTATTGTCATGGTTTCCCAAGCTCATGGGGAGGAGCTTTTGCGTCGCTT
GGCTTCTCCTGCTCCTGTTGATACAACAACTACTACCGTTAATGCTGCTG
CTTTGACTGGTTGTCTGGCGGTTACGCATGTGGAAAGGGAATGCTTGATT
TGCATACAGGCTTTCGAGGAGAGTGACACTATATTACGGCTACCATGTCA
ACATAACTACCACGAGGAATGTGCGCGAAAATGGCTGAGCCTGCGAAGGA
CTTGCCCGGCCTGTCGGATTGAGGTGAAGCCTCGGAGGGAGGGGTGAATG
GCAACGCTGCGGTCGACGACGACGACGCGCCTCAGGCACTGCGCCGACTG
CGACCAGCACTATGAAACGCGGGATCGACTCTGCCCGACGTGTGGCGCCG
CCTTTGTTCCCACAGCAAATCCGTCAGCGCAACCTGACCCGTGGTTTGCA
GGAGGAGGCTACCCAGGGGACGACCTGCCAATTTCCAGACCAGAGAGAGA
AGCACAACAGCAATTTGGTGATGCAGCGTGGCTCGAGGGTCGTCCAGACA
TAAATAATCTACCAGAGGCGATGCAGCAGCGCATACTTGAGCTGATCAAT
GGCCATGGCCTTGATGTAGAAGGCAGGGAGGGCGGCCCAGGCGAGCGGAA
TGGGTTGAGCGAGGAGGACATTGCCAAGCTCCCTCTCTCCCAATTACACA
CCACTTCCTCCATGCTCATGTCTGTGAACATAACCTTGGAGTCGGGTGAC
GGCCAGCCGCCTCTCACGATGGAGTGCATCCCCGGCTCATTTTCTCCGAT
CCCGTCGAAGGGCTTCCAATTTCAATTAATCCAAGCGGACCCCTTACTGG
CTGACGTGTTGCCGTTGCGCAACAAGGGAGCATGTCAAGGCAAGGTGCTC
GTTACACAGAGGGGGAAACAGACGTTTGGGGCCATGCTGGTGGCGGCAAG
AGCAGCGGGGGCTCTTGGTGTGGTGGTGATTAATTCAGTATCGTTGTGGC
CGTACCTCATGCGAGATGGGAAAGGCGAGGCTAAGATTGAGGCAGGGAAG
GAGGAAGGACAAATTGCGGACTGCTTTATTGTCATGGTTTCCCAAGCTCA
TGGGGAGGAGCTTTTGCGTCGCTTGGCTTCTCCTGCTCCTGTTGATACAA
CAACTACTACCGTTAATGCTGCTGCTTTGACTGGTTGTCTGGCGGTTACG
CATGTGGAAAGGGAATGCTTGATTTGCATACAGGCTTTCGAGGAGAGTGA
CACTATATTACGGCTACCATGTCAACATAACTACCACGAGGAATGTGCGC
GAAAATGGCTGAGCCTGCGAAGGACTTGCCCGGCCTGTCGGATTGAGGTG
AAGCCTCGGAGGGAGGGGTGAATGGCAACGCTGCGGTCGACGACGACGAC
GCGCCTCAGGCACTGCGCCGACTGCGACCAGCACTATGAAACGCGGGATC
GACTCTGCCCGACGTGTGGCGCCGCCTTTGTTCCCACAGCAAATCCGTCA
GCGCAACCTGACCCGTGGTTTGCAGGAGGAGGCTACCCAGGGGACGACCT
GCCAATTTCCAGACCAGAGAGAGAAGCACAACAGCAATTTGGTGATGCAG
CGTGGCTCGAGGGTCGTCCAGACATAAATAATCTACCAGAGGCGATGCAG
CAGCGCATACTTGAGCTGATCAATGGCCATGGCCTTGATGTAGAAGGCAG
GGAGGGCGGCCCAGGCGAGCGGAATGGGTTGAGCGAGGAGGACATTGCCA
AGCTCCCTCTCTCCCAATTACACACCACTTCCTCCATGCTCATGTCTG
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Synonyms
Publications