jgi.p|Nanoce1779_2|583974, mRNA_2958 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583974
Unique NamemRNA_2958
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1671
Alignment locationscaffold_7:344111..345882 +

Link to JBrowse

Properties
Property NameValue
TranscriptId584060
TrackFilteredModels2
ProteinId583974
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:344111..345882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583974gene_2958Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583974mRNA_2958-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2958CDS_2958Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2958 ID=mRNA_2958|Name=jgi.p|Nanoce1779_2|583974|organism=Nannochloropsis oceanica|type=mRNA|length=1671bp
GTGCAACTTCTCTTACCCCCAAAAAGTGTCTGTGACTTTCTGCTTCCATT
TCGCCCACGACACCTCACAATCAACTCCTCACACTTTAACCCGCACCCCG
ATACAAATTAGTAGGGGGCGCGTTCAGGACCTTAGGCGGGCACTGACAGC
CACCCCGGTGACCGACTGCGTCTCTCCCGGCGCATTCGTGTCGTCATCAT
CACCCTCGCCCACGCCTACCCACCAACCGCCCCTACAAGCTACAATAATG
GGAGGTGAACCCTCCAAGATCCTGCACGGGCCCCCACCGATCCCCACCAC
GAGAAGCAGCAGCATTAATGACAACGACGAGCCGCGATTGCCCTCGCGCC
CCACTCTCCTTCACGGGGGAGCAAACGTTTTGCAAGACCCATCCTTTTAC
ACCACATATGGAGTGACACACGCTCTCTCGATATGCCAAGCCAAGCCGCC
ACCGACCGCGGGTCTGACGATGGTGAAGCACATCAATGAAAGCGACCTGC
CGCACAGTGATCTGCTGCCTCATTTCGAGGATTTTATTTTTTTTATCCAC
AACGCACGCGTTGGTGGAGGCGTTGTCTACGTGCACTGCGCCGCCGGGGT
CAGTCGATCCACCACAGCTGTCTGCTCCTACTTGATGTGCATCCACGCCC
TCTCCTTCAAAGATGCCCTCGACTTCATCCGCACCCGTCGCGAAGTGGCT
TGCCCCAACCCTGGCTTTGTCAGACAACTTCAAGCATTTGAAAAAGATCC
ATTCACCATTCAAATGCGTGCCCGTATCCGCAACGCCTTCCCTCATGACG
TCGCTCTCGTCAAAGCCGACCTTCTCGAAATCAGACAAGCACTCGCAGAG
CGTTCCGCCAGGCTAGGAAGAGACGAAAAAGCCTTGATCCTTGATCCTCG
AAGCCGAATATTGGAAATGATTCACCAGATGCAAGAGCAGCAGGCAGGTG
CGGCGGAAGGGATGAGGGCAGGGGAGGATGATGAGAGCCACGAGCAGTGC
CGGTTGCCAATGAAGCCTCCCCCGGCGGGGTCGTCCGTGATGGCGATGAG
GCTGGGGGATAAGGGGTATGGATTGACATGGTTGGAGGAGGAGAAGGACC
ATCACACCCGAATGGAGGAGATGCCCCGATGAATGAGGTGTCAGGGAGGA
GGGAGGGCGAGTCGGAGAGGGGGAGTGAAGCTGCGTAGTGTGTGTATGTA
CGTTTTCCTTAGATTTATGTCGACCGATCTTGACAGAGTGTCCGACAAAA
CAATACATTTTATAATATTTCATCATGGCAATTTCATAAGATAAAAATGG
CGAGACAAGTAATTCTTCGAACATGACGAGGAGGCTGGGAAGGAGGGAGA
AAGGGAAGGGGACGAGAAATAGACCTCTATGTCAAGGGCACAACCCTTTA
TTTTCTTAGACAAAATTTAACCTGTTAGATATGGGCTGCAAGTGGTAAAC
ACTAAGCGTACGGCCGCGAAGGCTTCCACTGTTTAAAAGCATTATACAAA
GAAAGAACGAAAAAGAGGAAGAAGAAGGTGATAGAGGTGAAGAAGAAGAA
GGCGAAGGCGAAGAAGAATCTGCACGATGGGATAAATGATCTCTTTTCTA
GCTACCGCACGGCCCGTGCAAGCTTCATAAAGATGTAAAAGGCAAAGTAT
AAGACGAGGAAAGGGTTCGAA
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protein sequence of jgi.p|Nanoce1779_2|583974

>mRNA_2958-protein ID=mRNA_2958-protein|Name=jgi.p|Nanoce1779_2|583974|organism=Nannochloropsis oceanica|type=polypeptide|length=295bp
MGGEPSKILHGPPPIPTTRSSSINDNDEPRLPSRPTLLHGGANVLQDPSF
YTTYGVTHALSICQAKPPPTAGLTMVKHINESDLPHSDLLPHFEDFIFFI
HNARVGGGVVYVHCAAGVSRSTTAVCSYLMCIHALSFKDALDFIRTRREV
ACPNPGFVRQLQAFEKDPFTIQMRARIRNAFPHDVALVKADLLEIRQALA
ERSARLGRDEKALILDPRSRILEMIHQMQEQQAGAAEGMRAGEDDESHEQ
CRLPMKPPPAGSSVMAMRLGDKGYGLTWLEEEKDHHTRMEEMPR*
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mRNA from alignment at scaffold_7:344111..345882+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2958 ID=mRNA_2958|Name=jgi.p|Nanoce1779_2|583974|organism=Nannochloropsis oceanica|type=mRNA|length=1772bp|location=Sequence derived from alignment at scaffold_7:344111..345882+ (Nannochloropsis oceanica)
GTGCAACTTCTCTTACCCCCAAAAAGTGTCTGTGACTTTCTGCTTCCATT
TCGCCCACGACACCTCACAATCAACTCCTCACACTTTAACCCGCACCCCG
ATACAAATTAGTAGGGGGCGCGTTCAGGACCTTAGGCGGGCACTGACAGC
CACCCCGGTGACCGACTGCGTCTCTCCCGGCGCATTCGTGTCGTCATCAT
CACCCTCGCCCACGCCTACCCACCAACCGCCCCTACAAGCTACAATAATG
GGAGGTGAACCCTCCAAGATCCTGCACGGGCCCCCACCGATCCCCACCAC
GAGAAGCAGCAGCATTAATGACAACGACGAGCCGCGATTGCCCTCGCGCC
CCACTCTCCTTCACGGGGGAGCAAACGTTTTGCAAGACCCATCCTTTTAC
ACCACATATGGAGTGACACACGCTCTCTCGATATGCCAAGCCAAGCCGCC
ACCGACCGCGGGTCTGACGATGGTGAAGCACATCAATGAAAGCGACCTGC
CGCACAGTGATCTGCTGCCTCATTTCGAGGATTTTATTTTTTTTATCCAC
AACGCACGCGTTGGTGGAGGCGTTGTCTACGTGTAAGTATGCAAAGCTCC
AGTTTTTTCTCCGCTGCAATATCGAGCACAGCTGTCTCTTGTTTAGACTT
GTCGTCTCCTCATTCATCACAACGCACATACAGGCACTGCGCCGCCGGGG
TCAGTCGATCCACCACAGCTGTCTGCTCCTACTTGATGTGCATCCACGCC
CTCTCCTTCAAAGATGCCCTCGACTTCATCCGCACCCGTCGCGAAGTGGC
TTGCCCCAACCCTGGCTTTGTCAGACAACTTCAAGCATTTGAAAAAGATC
CATTCACCATTCAAATGCGTGCCCGTATCCGCAACGCCTTCCCTCATGAC
GTCGCTCTCGTCAAAGCCGACCTTCTCGAAATCAGACAAGCACTCGCAGA
GCGTTCCGCCAGGCTAGGAAGAGACGAAAAAGCCTTGATCCTTGATCCTC
GAAGCCGAATATTGGAAATGATTCACCAGATGCAAGAGCAGCAGGCAGGT
GCGGCGGAAGGGATGAGGGCAGGGGAGGATGATGAGAGCCACGAGCAGTG
CCGGTTGCCAATGAAGCCTCCCCCGGCGGGGTCGTCCGTGATGGCGATGA
GGCTGGGGGATAAGGGGTATGGATTGACATGGTTGGAGGAGGAGAAGGAC
CATCACACCCGAATGGAGGAGATGCCCCGATGAATGAGGTGTCAGGGAGG
AGGGAGGGCGAGTCGGAGAGGGGGAGTGAAGCTGCGTAGTGTGTGTATGT
ACGTTTTCCTTAGATTTATGTCGACCGATCTTGACAGAGTGTCCGACAAA
ACAATACATTTTATAATATTTCATCATGGCAATTTCATAAGATAAAAATG
GCGAGACAAGTAATTCTTCGAACATGACGAGGAGGCTGGGAAGGAGGGAG
AAAGGGAAGGGGACGAGAAATAGACCTCTATGTCAAGGGCACAACCCTTT
ATTTTCTTAGACAAAATTTAACCTGTTAGATATGGGCTGCAAGTGGTAAA
CACTAAGCGTACGGCCGCGAAGGCTTCCACTGTTTAAAAGCATTATACAA
AGAAAGAACGAAAAAGAGGAAGAAGAAGGTGATAGAGGTGAAGAAGAAGA
AGGCGAAGGCGAAGAAGAATCTGCACGATGGGATAAATGATCTCTTTTCT
AGCTACCGCACGGCCCGTGCAAGCTTCATAAAGATGTAAAAGGCAAAGTA
TAAGACGAGGAAAGGGTTCGAA
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Coding sequence (CDS) from alignment at scaffold_7:344111..345882+

>mRNA_2958 ID=mRNA_2958|Name=jgi.p|Nanoce1779_2|583974|organism=Nannochloropsis oceanica|type=CDS|length=1770bp|location=Sequence derived from alignment at scaffold_7:344111..345882+ (Nannochloropsis oceanica)
ATGGGAGGTGAACCCTCCAAGATCCTGCACGGGCCCCCACCGATCCCCAC
CACGAGAAGCAGCAGCATTAATGACAACGACGAGCCGCGATTGCCCTCGC
GCCCCACTCTCCTTCACGGGGGAGCAAACGTTTTGCAAGACCCATCCTTT
TACACCACATATGGAGTGACACACGCTCTCTCGATATGCCAAGCCAAGCC
GCCACCGACCGCGGGTCTGACGATGGTGAAGCACATCAATGAAAGCGACC
TGCCGCACAGTGATCTGCTGCCTCATTTCGAGGATTTTATTTTTTTTATC
CACAACGCACGCGTTGGTGGAGGCGTTGTCTACGTGCACTGCGCCGCCGG
GGTCAGTCGATCCACCACAGCTGTCTGCTCCTACTTGATGTGCATCCACG
CCCTCTCCTTCAAAGATGCCCTCGACTTCATCCGCACCCGTCGCGAAGTG
GCTTGCCCCAACCCTGGCTTTGTCAGACAACTTCAAGCATTTGAAAAAGA
TCCATTCACCATTCAAATGCGTGCCCGTATCCGCAACGCCTTCCCTCATG
ACGTCGCTCTCGTCAAAGCCGACCTTCTCGAAATCAGACAAGCACTCGCA
GAGCGTTCCGCCAGGCTAGGAAGAGACGAAAAAGCCTTGATCCTTGATCC
TCGAAGCCGAATATTGGAAATGATTCACCAGATGCAAGAGCAGCAGGCAG
GTGCGGCGGAAGGGATGAGGGCAGGGGAGGATGATGAGAGCCACGAGCAG
TGCCGGTTGCCAATGAAGCCTCCCCCGGCGGGGTCGTCCGTGATGGCGAT
GAGGCTGGGGGATAAGGGGTATGGATTGACATGGTTGGAGGAGGAGAAGG
ACCATCACACCCGAATGGAGGAGATGCCCCGATGAATGGGAGGTGAACCC
TCCAAGATCCTGCACGGGCCCCCACCGATCCCCACCACGAGAAGCAGCAG
CATTAATGACAACGACGAGCCGCGATTGCCCTCGCGCCCCACTCTCCTTC
ACGGGGGAGCAAACGTTTTGCAAGACCCATCCTTTTACACCACATATGGA
GTGACACACGCTCTCTCGATATGCCAAGCCAAGCCGCCACCGACCGCGGG
TCTGACGATGGTGAAGCACATCAATGAAAGCGACCTGCCGCACAGTGATC
TGCTGCCTCATTTCGAGGATTTTATTTTTTTTATCCACAACGCACGCGTT
GGTGGAGGCGTTGTCTACGTGCACTGCGCCGCCGGGGTCAGTCGATCCAC
CACAGCTGTCTGCTCCTACTTGATGTGCATCCACGCCCTCTCCTTCAAAG
ATGCCCTCGACTTCATCCGCACCCGTCGCGAAGTGGCTTGCCCCAACCCT
GGCTTTGTCAGACAACTTCAAGCATTTGAAAAAGATCCATTCACCATTCA
AATGCGTGCCCGTATCCGCAACGCCTTCCCTCATGACGTCGCTCTCGTCA
AAGCCGACCTTCTCGAAATCAGACAAGCACTCGCAGAGCGTTCCGCCAGG
CTAGGAAGAGACGAAAAAGCCTTGATCCTTGATCCTCGAAGCCGAATATT
GGAAATGATTCACCAGATGCAAGAGCAGCAGGCAGGTGCGGCGGAAGGGA
TGAGGGCAGGGGAGGATGATGAGAGCCACGAGCAGTGCCGGTTGCCAATG
AAGCCTCCCCCGGCGGGGTCGTCCGTGATGGCGATGAGGCTGGGGGATAA
GGGGTATGGATTGACATGGTTGGAGGAGGAGAAGGACCATCACACCCGAA
TGGAGGAGATGCCCCGATGA
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Synonyms
Publications