jgi.p|Nanoce1779_2|539920, mRNA_2956 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|539920
Unique Name	mRNA_2956
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1387
Alignment location	scaffold_7:338780..340578 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	540006
Track	FilteredModels2
ProteinId	539920

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:338780..340578 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|539920	gene_2956	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|539920	mRNA_2956-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2956	CDS_2956	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:338780..340578+
coding sequence from alignment at scaffold_7:338780..340578+

mRNA sequence

>mRNA_2956 ID=mRNA_2956|Name=jgi.p|Nanoce1779_2|539920|organism=Nannochloropsis oceanica|type=mRNA|length=1387bp
AATCCCATGAAGGAGGAAGTGGAGGACGATGAGGAGGAGGACGACGGAGA
GCAACAGGGCGGGGCGGAGGGTGAGGAGAACGCGGGAGCTGGGAATGTTA
AGGGGCTTACGGACAGCTATATTCGGTACGGGCAGACAGAGCCGCCGACC
ATACCCGTGGCGCAGCTTTTCGCGGAGGGGCATTTCCCGGAGGGGGAGAT
CCAGCCACATCCTGGTGACTTTAATACGTTTCGCATCACCTCGGAGGAAA
AAAGGGCTTTGGAGCGATTGGAGACGGATTTATACGATAAGGTTCGAATG
GCTTCGGAAGTACATAGGCAGGTGAGGAGGTATGCGCAGAGTTTTATCGA
ACCGGGGATCAAATTGATTGATATGTGCGAGCGGTTGGAGAACAAAAATA
GGGAGTTGATGGTGGAGGCGGGTTTGGAGAGGGGGGTGGGGTTTCCAACG
GGGTGTAGTTTAAATCATGTGGCTGCGCATTACACACCGAATTGTGGGGA
TGAGACTGTGCTGGGGTACGGGGATGTGATGAAAGTGGATTTTGGGTGCC
AGATTGAGGGGAGGATTATTGATTGTGCGTGGACGGTGGCCTTTGATCCG
ACGTATGACGAGTTGCTGGAGGCGGCGAGGGAGGCGACGGATACGGGGAT
CCGGACGGCAGGTATCGACGTGCGGTTATGTGATGTGGGGGAGGCGATCC
AAGAGACCATGGAGAGCTTTGAGGTGACCATTCAGGGAACCACGTACCCG
GTGAAGAGCATTCGAAACCTGAACGGGCATAGCATTGGCCCATATGAGAT
CCACGCGGGGAAGTCAGTGCCTATCGTGAAGGGGGGGGACGCTACCAAGA
TGGAGGAGGGGGAGTTCTTTGCCATTGAGACGTTCGGATCGACGGGGCGG
GCGTTTGTGCAGGAGGACATGGAATGTAGTCATTATATGAAGGCTTTTGA
AGCTCCCCATGTGCCCTTGCGAATGGCCTCTGCCAAGCGGTTGCTCTCGC
ACATTGACAAAACCTTCAAAACGCTGGCGTTTTGCCGTCGGTGGCTCGAA
AGGCCCGACGGGGGCTCGGGGTTTATTCACGGACAGAAAGGGAAACAGGA
GAAGTATCTGGGCGCGCTGAAGAATTTGTGTGATGTGGGGATTGTGGTGC
CGTACCCGCCGCTTGTGGACGTAAGAGGGAGTTATGTCGCGCAGTATGAG
CACACGATCTTGTTGAGGCCAACGTGCAAGGAGGTATTGTCGAGAGGCGA
TGATTTCTAGGAGGTTGAGGGAGGGGAGGGAATGTGAGAGATGAAGAAGA
CAATATCAAAGAATGGGGGTAAAGTTTCAGAGGTAGATTGAGATTTTGTC
CACTTTGTTCCGCGTTGTCAAAGATTGCTGGTCTTAT

protein sequence of jgi.p|Nanoce1779_2|539920

>mRNA_2956-protein ID=mRNA_2956-protein|Name=jgi.p|Nanoce1779_2|539920|organism=Nannochloropsis oceanica|type=polypeptide|length=418bp
MKEEVEDDEEEDDGEQQGGAEGEENAGAGNVKGLTDSYIRYGQTEPPTIP
VAQLFAEGHFPEGEIQPHPGDFNTFRITSEEKRALERLETDLYDKVRMAS
EVHRQVRRYAQSFIEPGIKLIDMCERLENKNRELMVEAGLERGVGFPTGC
SLNHVAAHYTPNCGDETVLGYGDVMKVDFGCQIEGRIIDCAWTVAFDPTY
DELLEAAREATDTGIRTAGIDVRLCDVGEAIQETMESFEVTIQGTTYPVK
SIRNLNGHSIGPYEIHAGKSVPIVKGGDATKMEEGEFFAIETFGSTGRAF
VQEDMECSHYMKAFEAPHVPLRMASAKRLLSHIDKTFKTLAFCRRWLERP
DGGSGFIHGQKGKQEKYLGALKNLCDVGIVVPYPPLVDVRGSYVAQYEHT
ILLRPTCKEVLSRGDDF*

mRNA from alignment at scaffold_7:338780..340578+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2956 ID=mRNA_2956|Name=jgi.p|Nanoce1779_2|539920|organism=Nannochloropsis oceanica|type=mRNA|length=1799bp|location=Sequence derived from alignment at scaffold_7:338780..340578+ (Nannochloropsis oceanica)
AATCCCATGAAGGAGGAAGTGGAGGACGATGAGGAGGAGGACGACGGAGA
GCAACAGGGCGGGGCGGAGGGTGAGGAGAACGCGGGAGCTGGGAATGGTG
CCAATGGGGACAAGAAAAAGAAGAAAAAGAAGAAAAAGGTCAAATCCACC
ACTGCTTATGTCGAAGCCGGTGCCGATGCGGAGGTCGCAGCTGCTGCTGT
GACAGGTGAGAAGGGAAGCGAGGGAGGCAAGGCCTTATTTCTGAAGATAC
TCACTCCGTTTCCTCTTTCATATTACCGCCCATACAGTCCAGAAGGAATG
TGCGACAGTCAAACAGGAGCCTGGGGATCAAGAGGGTGACGATGATGATG
CCGAGGACGACGCCCTCGCAGCGGACGGCGTAGCTAAGAAGAAGAAGAAG
AAAAAGAAGAAGGGGGGCAAAGGAGGCGGCGGCGGGAGCATTGGTGCAGT
GCCAGGGCAGCTTAAGCCTGCGACGGGTGTCCCGTCCAAGAAGGCACCGG
CGAGGGGAGTTAAGGGGCTTACGGACAGCTATATTCGGTACGGGCAGACA
GAGCCGCCGACCATACCCGTGGCGCAGCTTTTCGCGGAGGGGCATTTCCC
GGAGGGGGAGATCCAGCCACATCCTGGTGACTTTAATACGTTTCGCATCA
CCTCGGAGGAAAAAAGGGCTTTGGAGCGATTGGAGACGGATTTATACGAT
AAGGTTCGAATGGCTTCGGAAGTACATAGGCAGGTGAGGAGGTATGCGCA
GAGTTTTATCGAACCGGGGATCAAATTGATTGATATGTGCGAGCGGTTGG
AGAACAAAAATAGGGAGTTGATGGTGGAGGCGGGTTTGGAGAGGGGGGTG
GGGTTTCCAACGGGGTGTAGTTTAAATCATGTGGCTGCGCATTACACACC
GAATTGTGGGGATGAGACTGTGCTGGGGTACGGGGATGTGATGAAAGTGG
ATTTTGGGTGCCAGATTGAGGGGAGGATTATTGATTGTGCGTGGACGGTG
GCCTTTGATCCGACGTATGACGAGTTGCTGGAGGCGGCGAGGGAGGCGAC
GGATACGGGGATCCGGACGGCAGGTATCGACGTGCGGTTATGTGATGTGG
GGGAGGCGATCCAAGAGACCATGGAGAGCTTTGAGGTGACCATTCAGGGA
ACCACGTACCCGGTGAAGAGCATTCGAAACCTGAACGGGCATAGCATTGG
CCCATATGAGATCCACGCGGGGAAGTCAGTGCCTATCGTGAAGGGGGGGG
ACGCTACCAAGATGGAGGAGGGGGAGTTCTTTGCCATTGAGACGTTCGGA
TCGACGGGGCGGGCGTTTGTGCAGGAGGACATGGAATGTAGTCATTATAT
GAAGGCTTTTGAAGCTCCCCATGTGCCCTTGCGAATGGCCTCTGCCAAGC
GGTTGCTCTCGCACATTGACAAAACCTTCAAAACGCTGGCGTTTTGCCGT
CGGTGGCTCGAAAGGCCCGACGGGGGCTCGGGGTTTATTCACGGACAGAA
AGGGAAACAGGAGAAGTATCTGGGCGCGCTGAAGAATTTGTGTGATGTGG
GGATTGTGGTGCCGTACCCGCCGCTTGTGGACGTAAGAGGGAGTTATGTC
GCGCAGTATGAGCACACGATCTTGTTGAGGCCAACGTGCAAGGAGGTATT
GTCGAGAGGCGATGATTTCTAGGAGGTTGAGGGAGGGGAGGGAATGTGAG
AGATGAAGAAGACAATATCAAAGAATGGGGGTAAAGTTTCAGAGGTAGAT
TGAGATTTTGTCCACTTTGTTCCGCGTTGTCAAAGATTGCTGGTCTTAT

Coding sequence (CDS) from alignment at scaffold_7:338780..340578+

>mRNA_2956 ID=mRNA_2956|Name=jgi.p|Nanoce1779_2|539920|organism=Nannochloropsis oceanica|type=CDS|length=2508bp|location=Sequence derived from alignment at scaffold_7:338780..340578+ (Nannochloropsis oceanica)
ATGAAGGAGGAAGTGGAGGACGATGAGGAGGAGGACGACGGAGAGCAACA
GGGCGGGGCGGAGGGTGAGGAGAACGCGGGAGCTGGGAATGTTAAGGGGC
TTACGGACAGCTATATTCGGTACGGGCAGACAGAGCCGCCGACCATACCC
GTGGCGCAGCTTTTCGCGGAGGGGCATTTCCCGGAGGGGGAGATCCAGCC
ACATCCTGGTGACTTTAATACGTTTCGCATCACCTCGGAGGAAAAAAGGG
CTTTGGAGCGATTGGAGACGGATTTATACGATAAGGTTCGAATGGCTTCG
GAAGTACATAGGCAGGTGAGGAGGTATGCGCAGAGTTTTATCGAACCGGG
GATCAAATTGATTGATATGTGCGAGCGGTTGGAGAACAAAAATAGGGAGT
TGATGGTGGAGGCGGGTTTGGAGAGGGGGGTGGGGTTTCCAACGGGGTGT
AGTTTAAATCATGTGGCTGCGCATTACACACCGAATTGTGGGGATGAGAC
TGTGCTGGGGTACGGGGATGTGATGAAAGTGGATTTTGGGTGCCAGATTG
AGGGGAGGATTATTGATTGTGCGTGGACGGTGGCCTTTGATCCGACGTAT
GACGAGTTGCTGGAGGCGGCGAGGGAGGCGACGGATACGGGGATCCGGAC
GGCAGGTATCGACGTGCGGTTATGTGATGTGGGGGAGGCGATCCAAGAGA
CCATGGAGAGCTTTGAGGTGACCATTCAGGGAACCACGTACCCGGTGAAG
AGCATTCGAAACCTGAACGGGCATAGCATTGGCCCATATGAGATCCACGC
GGGGAAGTCAGTGCCTATCGTGAAGGGGGGGGACGCTACCAAGATGGAGG
AGGGGGAGTTCTTTGCCATTGAGACGTTCGGATCGACGGGGCGGGCGTTT
GTGCAGGAGGACATGGAATGTAGTCATTATATGAAGGCTTTTGAAGCTCC
CCATGTGCCCTTGCGAATGGCCTCTGCCAAGCGGTTGCTCTCGCACATTG
ACAAAACCTTCAAAACGCTGGCGTTTTGCCGTCGGTGGCTCGAAAGGCCC
GACGGGGGCTCGGGGTTTATTCACGGACAGAAAGGGAAACAGGAGAAGTA
TCTGGGCGCGCTGAAGAATTTGTGTGATGTGGGGATTGTGGTGCCGTACC
CGCCGCTTGTGGACGTAAGAGGGAGTTATGTCGCGCAGTATGAGCACACG
ATCTTGTTGAGGCCAACGTGCAAGGAGGTATTGTCGAGAGGCGATGATTT
CTAGATGAAGGAGGAAGTGGAGGACGATGAGGAGGAGGACGACGGAGAGC
AACAGGGCGGGGCGGAGGGTGAGGAGAACGCGGGAGCTGGGAATGTTAAG
GGGCTTACGGACAGCTATATTCGGTACGGGCAGACAGAGCCGCCGACCAT
ACCCGTGGCGCAGCTTTTCGCGGAGGGGCATTTCCCGGAGGGGGAGATCC
AGCCACATCCTGGTGACTTTAATACGTTTCGCATCACCTCGGAGGAAAAA
AGGGCTTTGGAGCGATTGGAGACGGATTTATACGATAAGGTTCGAATGGC
TTCGGAAGTACATAGGCAGGTGAGGAGGTATGCGCAGAGTTTTATCGAAC
CGGGGATCAAATTGATTGATATGTGCGAGCGGTTGGAGAACAAAAATAGG
GAGTTGATGGTGGAGGCGGGTTTGGAGAGGGGGGTGGGGTTTCCAACGGG
GTGTAGTTTAAATCATGTGGCTGCGCATTACACACCGAATTGTGGGGATG
AGACTGTGCTGGGGTACGGGGATGTGATGAAAGTGGATTTTGGGTGCCAG
ATTGAGGGGAGGATTATTGATTGTGCGTGGACGGTGGCCTTTGATCCGAC
GTATGACGAGTTGCTGGAGGCGGCGAGGGAGGCGACGGATACGGGGATCC
GGACGGCAGGTATCGACGTGCGGTTATGTGATGTGGGGGAGGCGATCCAA
GAGACCATGGAGAGCTTTGAGGTGACCATTCAGGGAACCACGTACCCGGT
GAAGAGCATTCGAAACCTGAACGGGCATAGCATTGGCCCATATGAGATCC
ACGCGGGGAAGTCAGTGCCTATCGTGAAGGGGGGGGACGCTACCAAGATG
GAGGAGGGGGAGTTCTTTGCCATTGAGACGTTCGGATCGACGGGGCGGGC
GTTTGTGCAGGAGGACATGGAATGTAGTCATTATATGAAGGCTTTTGAAG
CTCCCCATGTGCCCTTGCGAATGGCCTCTGCCAAGCGGTTGCTCTCGCAC
ATTGACAAAACCTTCAAAACGCTGGCGTTTTGCCGTCGGTGGCTCGAAAG
GCCCGACGGGGGCTCGGGGTTTATTCACGGACAGAAAGGGAAACAGGAGA
AGTATCTGGGCGCGCTGAAGAATTTGTGTGATGTGGGGATTGTGGTGCCG
TACCCGCCGCTTGTGGACGTAAGAGGGAGTTATGTCGCGCAGTATGAGCA
CACGATCTTGTTGAGGCCAACGTGCAAGGAGGTATTGTCGAGAGGCGATG
ATTTCTAG

Synonyms

Publications