jgi.p|Nanoce1779_2|583951, mRNA_2954 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583951
Unique NamemRNA_2954
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length704
Alignment locationscaffold_7:334876..335579 -

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Properties
Property NameValue
TranscriptId584037
TrackFilteredModels2
ProteinId583951
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:334876..335579 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583951gene_2954Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583951mRNA_2954-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2954CDS_2954Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2954 ID=mRNA_2954|Name=jgi.p|Nanoce1779_2|583951|organism=Nannochloropsis oceanica|type=mRNA|length=704bp
ACAGGCCCACCTGTCACCCCATGTCCGGAGCGAAGCGGCTGTTCGTCCAC
GGCCTTACCGGAGGCATTGCCACTGGCAAAAGCCATGCATGTGGCGTCCT
CCAATCATTAGGTGCCACCATCCTCCACGCCGATCTTCTTGCCCACCAAT
GCTATGCTCCCCAAACACCGGAAAACGAAAAATTGCGTCAAACATTCGGC
ACAAGCATTTTCACGGCCGATGGGGAGGTGGATAGAGCGAAGCTGGGTAA
GCTTGTTTTTTCTGAGGATCAGCAGTTGCTGAAACTGAATAAGGTCATGT
TTCCGGCCATTGAGAGGAGGACGAAAGAGGAGATTGCGCGGTTGGAAATT
GAGGGGAGGAGTTGGGTAGTGGTGGAGGCTGCGGTGTTGTTTGAGGCGGG
GTGGGAGAGGTGGATGGATGAGGTATGGACAATGGTGGTTGATCCTGCAG
TGGCACGACTACGATTGATGAAACGAAATGGTTTAACGGCCATGGAGGCG
GAGGGGAGAATCAGAGCACAGATGAGTAATGAGGAGAGGGTGCAAAGGGC
CAGGGTTGTAATTGATTCGAAAGGGAGCAAGGAGGAGACAGCGGGAAAAT
TAAGAGTAGCAGTAAATGATTTAAAGAAACGCGTTAAAAAAAAAATTGCG
TTGGATTCTATGTCATGTTAAAACGGCTTTCAAAAATAAGAAAACTGGTA
ATAG
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protein sequence of jgi.p|Nanoce1779_2|583951

>mRNA_2954-protein ID=mRNA_2954-protein|Name=jgi.p|Nanoce1779_2|583951|organism=Nannochloropsis oceanica|type=polypeptide|length=217bp
MSGAKRLFVHGLTGGIATGKSHACGVLQSLGATILHADLLAHQCYAPQTP
ENEKLRQTFGTSIFTADGEVDRAKLGKLVFSEDQQLLKLNKVMFPAIERR
TKEEIARLEIEGRSWVVVEAAVLFEAGWERWMDEVWTMVVDPAVARLRLM
KRNGLTAMEAEGRIRAQMSNEERVQRARVVIDSKGSKEETAGKLRVAVND
LKKRVKKKIALDSMSC*
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mRNA from alignment at scaffold_7:334876..335579-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2954 ID=mRNA_2954|Name=jgi.p|Nanoce1779_2|583951|organism=Nannochloropsis oceanica|type=mRNA|length=704bp|location=Sequence derived from alignment at scaffold_7:334876..335579- (Nannochloropsis oceanica)
ACAGGCCCACCTGTCACCCCATGTCCGGAGCGAAGCGGCTGTTCGTCCAC
GGCCTTACCGGAGGCATTGCCACTGGCAAAAGCCATGCATGTGGCGTCCT
CCAATCATTAGGTGCCACCATCCTCCACGCCGATCTTCTTGCCCACCAAT
GCTATGCTCCCCAAACACCGGAAAACGAAAAATTGCGTCAAACATTCGGC
ACAAGCATTTTCACGGCCGATGGGGAGGTGGATAGAGCGAAGCTGGGTAA
GCTTGTTTTTTCTGAGGATCAGCAGTTGCTGAAACTGAATAAGGTCATGT
TTCCGGCCATTGAGAGGAGGACGAAAGAGGAGATTGCGCGGTTGGAAATT
GAGGGGAGGAGTTGGGTAGTGGTGGAGGCTGCGGTGTTGTTTGAGGCGGG
GTGGGAGAGGTGGATGGATGAGGTATGGACAATGGTGGTTGATCCTGCAG
TGGCACGACTACGATTGATGAAACGAAATGGTTTAACGGCCATGGAGGCG
GAGGGGAGAATCAGAGCACAGATGAGTAATGAGGAGAGGGTGCAAAGGGC
CAGGGTTGTAATTGATTCGAAAGGGAGCAAGGAGGAGACAGCGGGAAAAT
TAAGAGTAGCAGTAAATGATTTAAAGAAACGCGTTAAAAAAAAAATTGCG
TTGGATTCTATGTCATGTTAAAACGGCTTTCAAAAATAAGAAAACTGGTA
ATAG
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Coding sequence (CDS) from alignment at scaffold_7:334876..335579-

>mRNA_2954 ID=mRNA_2954|Name=jgi.p|Nanoce1779_2|583951|organism=Nannochloropsis oceanica|type=CDS|length=651bp|location=Sequence derived from alignment at scaffold_7:334876..335579- (Nannochloropsis oceanica)
ATGTCCGGAGCGAAGCGGCTGTTCGTCCACGGCCTTACCGGAGGCATTGC
CACTGGCAAAAGCCATGCATGTGGCGTCCTCCAATCATTAGGTGCCACCA
TCCTCCACGCCGATCTTCTTGCCCACCAATGCTATGCTCCCCAAACACCG
GAAAACGAAAAATTGCGTCAAACATTCGGCACAAGCATTTTCACGGCCGA
TGGGGAGGTGGATAGAGCGAAGCTGGGTAAGCTTGTTTTTTCTGAGGATC
AGCAGTTGCTGAAACTGAATAAGGTCATGTTTCCGGCCATTGAGAGGAGG
ACGAAAGAGGAGATTGCGCGGTTGGAAATTGAGGGGAGGAGTTGGGTAGT
GGTGGAGGCTGCGGTGTTGTTTGAGGCGGGGTGGGAGAGGTGGATGGATG
AGGTATGGACAATGGTGGTTGATCCTGCAGTGGCACGACTACGATTGATG
AAACGAAATGGTTTAACGGCCATGGAGGCGGAGGGGAGAATCAGAGCACA
GATGAGTAATGAGGAGAGGGTGCAAAGGGCCAGGGTTGTAATTGATTCGA
AAGGGAGCAAGGAGGAGACAGCGGGAAAATTAAGAGTAGCAGTAAATGAT
TTAAAGAAACGCGTTAAAAAAAAAATTGCGTTGGATTCTATGTCATGTTA
A
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Synonyms
Publications