jgi.p|Nanoce1779_2|583950, mRNA_2953 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583950
Unique NamemRNA_2953
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1337
Alignment locationscaffold_7:333522..334858 +

Link to JBrowse

Properties
Property NameValue
TranscriptId584036
TrackFilteredModels2
ProteinId583950
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:333522..334858 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583950gene_2953Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583950mRNA_2953-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2953CDS_2953Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2953 ID=mRNA_2953|Name=jgi.p|Nanoce1779_2|583950|organism=Nannochloropsis oceanica|type=mRNA|length=1337bp
ACAGGTTGACGGCCCACAGGGGATGAAGATGTTGCCTCTGATTGGTTGGG
TCCTGACGCTTAGCCGGCAGCAAACTGCCTCGGCCGCCGCCATGTCGTCA
CTCAATGCCTTTGTTTTGGCGCCGCGGCTGGCAGGATGCATGCGACCCGT
CGTCGCGAAATCTGCCGCGAGCGGGGCAAGGAGGACTGCCGCCACTCACG
TCACTGTGACCTCCACCGACACAAACCCTCCTCTCACTTCCAGTGCCAGC
CCTTCAATCACAAGAGAGGTATCCACCACCACTATTACGGCTAGGCCAAC
TGCCACACCGTTGTTGGACATGCACGATGTGACCGTCCAGTCGAACCCCA
GCAAAGGCCCTATGATGCAGCGCCTCCGTGTCCACGTCATGCCCCTGGAG
TCGAATAAGCTCGAGATGCTGCTCGCACAGGTCTATGCCCGCGTCCTTAA
GGGAGGCGGCGTGTTAGGGATGGATGCCGAGTGGCAGCCGGAGATTGCAC
GCTTTGAAAGAAATCCTGTGGCGTTGCTACAGCTTGCGTGGGAGGAAGAT
GTCTTTTTGGTGCGTCTCCAGCATTTACAAGGAGAGGTGCCCGCCTCCTT
GCACAAATTAATGTCCGATGTAAGTATTGTTAAGGTAGGATGTAATATTG
GGGGGGATGCGAAGCGGCTACTTCAAGACTATGCGCTCGATACCCGCGGA
CACGTGGACCTTAAGGAAGTCACTTCCGGGTTGGGTCTTGTGCGATGCAA
ACGACGGAGCATGGCCTGGCTTGCCAAGGAGTTTTTGAGCATCGAAATGG
ACAAGTCGCAACAGTGTTCGGACTGGGGTAATGTAGAACTGTCTCCAGAA
CAGATAAAATATTCGAGTATCGATGCCTGGGTTGCCGGAGCAATAGCGGG
GAATCTTTTTAGGACGTATAAAGGTCAGGTAGGACAGCCCACATGCGTAT
CCTCTTTTTGCAAGCGCCTTGTGCCCCAGCATGTGAATCGACGGGCCCAC
AGTGGGAGTGACGGGCGGGCTAAATACGATAGGAAGGGAGGGAAGAAGTG
GCGGCGGCTACAGAAGCAGGAGGAGCCAGAACCGCAGCAACAGCAAAGAG
TCCAGCAACAGCAGCTGCAGTCGATGCAGCAACAGCAGCAACAGCAGCTG
CAGTCGATGCAGCAACAGCAGCAACAGCAGCTGCAGTCGATGCAGCAACA
GCAGCAACAGCAGCAAGTGCAGCAGCAACAACAGCCACAGGCGCAGGTTT
GTAACATTATGTGAAGATGATAAAAGAATAGATAAAAAGCAACGAGAATA
TGATTCTCAACAAACAAGGGAAGAAACAAAGTACATG
back to top

protein sequence of jgi.p|Nanoce1779_2|583950

>mRNA_2953-protein ID=mRNA_2953-protein|Name=jgi.p|Nanoce1779_2|583950|organism=Nannochloropsis oceanica|type=polypeptide|length=414bp
MKMLPLIGWVLTLSRQQTASAAAMSSLNAFVLAPRLAGCMRPVVAKSAAS
GARRTAATHVTVTSTDTNPPLTSSASPSITREVSTTTITARPTATPLLDM
HDVTVQSNPSKGPMMQRLRVHVMPLESNKLEMLLAQVYARVLKGGGVLGM
DAEWQPEIARFERNPVALLQLAWEEDVFLVRLQHLQGEVPASLHKLMSDV
SIVKVGCNIGGDAKRLLQDYALDTRGHVDLKEVTSGLGLVRCKRRSMAWL
AKEFLSIEMDKSQQCSDWGNVELSPEQIKYSSIDAWVAGAIAGNLFRTYK
GQVGQPTCVSSFCKRLVPQHVNRRAHSGSDGRAKYDRKGGKKWRRLQKQE
EPEPQQQQRVQQQQLQSMQQQQQQQLQSMQQQQQQQLQSMQQQQQQQQVQ
QQQQPQAQVCNIM*
back to top

mRNA from alignment at scaffold_7:333522..334858+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2953 ID=mRNA_2953|Name=jgi.p|Nanoce1779_2|583950|organism=Nannochloropsis oceanica|type=mRNA|length=1337bp|location=Sequence derived from alignment at scaffold_7:333522..334858+ (Nannochloropsis oceanica)
ACAGGTTGACGGCCCACAGGGGATGAAGATGTTGCCTCTGATTGGTTGGG
TCCTGACGCTTAGCCGGCAGCAAACTGCCTCGGCCGCCGCCATGTCGTCA
CTCAATGCCTTTGTTTTGGCGCCGCGGCTGGCAGGATGCATGCGACCCGT
CGTCGCGAAATCTGCCGCGAGCGGGGCAAGGAGGACTGCCGCCACTCACG
TCACTGTGACCTCCACCGACACAAACCCTCCTCTCACTTCCAGTGCCAGC
CCTTCAATCACAAGAGAGGTATCCACCACCACTATTACGGCTAGGCCAAC
TGCCACACCGTTGTTGGACATGCACGATGTGACCGTCCAGTCGAACCCCA
GCAAAGGCCCTATGATGCAGCGCCTCCGTGTCCACGTCATGCCCCTGGAG
TCGAATAAGCTCGAGATGCTGCTCGCACAGGTCTATGCCCGCGTCCTTAA
GGGAGGCGGCGTGTTAGGGATGGATGCCGAGTGGCAGCCGGAGATTGCAC
GCTTTGAAAGAAATCCTGTGGCGTTGCTACAGCTTGCGTGGGAGGAAGAT
GTCTTTTTGGTGCGTCTCCAGCATTTACAAGGAGAGGTGCCCGCCTCCTT
GCACAAATTAATGTCCGATGTAAGTATTGTTAAGGTAGGATGTAATATTG
GGGGGGATGCGAAGCGGCTACTTCAAGACTATGCGCTCGATACCCGCGGA
CACGTGGACCTTAAGGAAGTCACTTCCGGGTTGGGTCTTGTGCGATGCAA
ACGACGGAGCATGGCCTGGCTTGCCAAGGAGTTTTTGAGCATCGAAATGG
ACAAGTCGCAACAGTGTTCGGACTGGGGTAATGTAGAACTGTCTCCAGAA
CAGATAAAATATTCGAGTATCGATGCCTGGGTTGCCGGAGCAATAGCGGG
GAATCTTTTTAGGACGTATAAAGGTCAGGTAGGACAGCCCACATGCGTAT
CCTCTTTTTGCAAGCGCCTTGTGCCCCAGCATGTGAATCGACGGGCCCAC
AGTGGGAGTGACGGGCGGGCTAAATACGATAGGAAGGGAGGGAAGAAGTG
GCGGCGGCTACAGAAGCAGGAGGAGCCAGAACCGCAGCAACAGCAAAGAG
TCCAGCAACAGCAGCTGCAGTCGATGCAGCAACAGCAGCAACAGCAGCTG
CAGTCGATGCAGCAACAGCAGCAACAGCAGCTGCAGTCGATGCAGCAACA
GCAGCAACAGCAGCAAGTGCAGCAGCAACAACAGCCACAGGCGCAGGTTT
GTAACATTATGTGAAGATGATAAAAGAATAGATAAAAAGCAACGAGAATA
TGATTCTCAACAAACAAGGGAAGAAACAAAGTACATG
back to top

Coding sequence (CDS) from alignment at scaffold_7:333522..334858+

>mRNA_2953 ID=mRNA_2953|Name=jgi.p|Nanoce1779_2|583950|organism=Nannochloropsis oceanica|type=CDS|length=1242bp|location=Sequence derived from alignment at scaffold_7:333522..334858+ (Nannochloropsis oceanica)
ATGAAGATGTTGCCTCTGATTGGTTGGGTCCTGACGCTTAGCCGGCAGCA
AACTGCCTCGGCCGCCGCCATGTCGTCACTCAATGCCTTTGTTTTGGCGC
CGCGGCTGGCAGGATGCATGCGACCCGTCGTCGCGAAATCTGCCGCGAGC
GGGGCAAGGAGGACTGCCGCCACTCACGTCACTGTGACCTCCACCGACAC
AAACCCTCCTCTCACTTCCAGTGCCAGCCCTTCAATCACAAGAGAGGTAT
CCACCACCACTATTACGGCTAGGCCAACTGCCACACCGTTGTTGGACATG
CACGATGTGACCGTCCAGTCGAACCCCAGCAAAGGCCCTATGATGCAGCG
CCTCCGTGTCCACGTCATGCCCCTGGAGTCGAATAAGCTCGAGATGCTGC
TCGCACAGGTCTATGCCCGCGTCCTTAAGGGAGGCGGCGTGTTAGGGATG
GATGCCGAGTGGCAGCCGGAGATTGCACGCTTTGAAAGAAATCCTGTGGC
GTTGCTACAGCTTGCGTGGGAGGAAGATGTCTTTTTGGTGCGTCTCCAGC
ATTTACAAGGAGAGGTGCCCGCCTCCTTGCACAAATTAATGTCCGATGTA
AGTATTGTTAAGGTAGGATGTAATATTGGGGGGGATGCGAAGCGGCTACT
TCAAGACTATGCGCTCGATACCCGCGGACACGTGGACCTTAAGGAAGTCA
CTTCCGGGTTGGGTCTTGTGCGATGCAAACGACGGAGCATGGCCTGGCTT
GCCAAGGAGTTTTTGAGCATCGAAATGGACAAGTCGCAACAGTGTTCGGA
CTGGGGTAATGTAGAACTGTCTCCAGAACAGATAAAATATTCGAGTATCG
ATGCCTGGGTTGCCGGAGCAATAGCGGGGAATCTTTTTAGGACGTATAAA
GGTCAGGTAGGACAGCCCACATGCGTATCCTCTTTTTGCAAGCGCCTTGT
GCCCCAGCATGTGAATCGACGGGCCCACAGTGGGAGTGACGGGCGGGCTA
AATACGATAGGAAGGGAGGGAAGAAGTGGCGGCGGCTACAGAAGCAGGAG
GAGCCAGAACCGCAGCAACAGCAAAGAGTCCAGCAACAGCAGCTGCAGTC
GATGCAGCAACAGCAGCAACAGCAGCTGCAGTCGATGCAGCAACAGCAGC
AACAGCAGCTGCAGTCGATGCAGCAACAGCAGCAACAGCAGCAAGTGCAG
CAGCAACAACAGCCACAGGCGCAGGTTTGTAACATTATGTGA
back to top
Synonyms
Publications