jgi.p|Nanoce1779_2|583938, mRNA_2952 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583938
Unique NamemRNA_2952
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1698
Alignment locationscaffold_7:330999..333307 -

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Properties
Property NameValue
TranscriptId584024
TrackFilteredModels2
ProteinId583938
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:330999..333307 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583938gene_2952Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583938mRNA_2952-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2952CDS_2952Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2952 ID=mRNA_2952|Name=jgi.p|Nanoce1779_2|583938|organism=Nannochloropsis oceanica|type=mRNA|length=1698bp
CAGCACCTTACACACAAGCCACAGTAGCCAACGTGAGCCCCCCATCAACA
CAGGTAGCCGTAGCAGCATAGAAGCGGTAGGAGCCCAGCAGCGAAAGCAG
AGCTTCTACAATCATGGCGGCCGACCGATTTAACATAAACCGTAGTTGGG
AGCATTTGCAAAATAAGTATGTGGGCACAGGTCACCCAGACCTGACCAAA
CATGAATGGCTGACAAATCAGCACCGAGACACCTACGCCACCCATCTGGG
CCACCACGACCAGCTGGCTTACATTGCCGTCGCGCAAAATGACGCCGTGG
GGCGTGTCCGCTACCAGATGCTCGAGAAGATGTTACAGCCTTGCGGGCCA
CCACCTGCGGCAAAGGATGACGAAGATGAGGATTAAGCGGACATGCGGAA
GGAAGATAGTAAGGGTGTAATAAAGTATGCTTTCGGAGAAGAATGGACGA
AAAACACAAAACACTTAAAGACGTAAATATCAACTCCTTTCTTGGTATGG
CAGAGTTGTACTTGTTCTTTCTCGTGCTTCGTATACCATCTCGTGCTTCG
TATACCATCCCGTCACACCACCAGCACAAACCACAACAAAGCGCGAACAA
CCGAATAGGGGTTCCGCCTCCCCACACTCCTCGCCTCGCCGCACTCTACC
CCAAGGACCCTCAGTATATCATTTATCATCCTCCCCTCCTTATGCGGCCT
TCCTGGATGCCCCGCTTGAATATAGATCCGACAGTTGTTATGTTTTCCGT
ACAATGCCGTCGTCACGCACCGATTCCGGTACAAGTCCACGTGAATCAAA
TTCTTCTTCGCGGCCCGATACGCCCGTATCTGCGCCTCCTCCATGCTAGG
CGCCTTCCCCACCCCATATCCACCGCACCCGTTAAGATTCCCCACCACCA
CCAACGCCCGATATGAGAGGATGTGCCCCCCTTTGATGATCTTCTGCGTC
GTGTCCGTGTCCACCAACATCTTCACCCACTTTCCTTCCGGGTAAATTCC
AAACGGATTCACAGACTCCTTGTCTCTCCCTTCGTCCTCATCCTCCTCCT
CCTCCTCCTCCTCTTTTTCATCTTCCGGAGACAAGCCTAAGCCAGACCCT
CTCTCCGTCCCTCCCTCCTCCCCATGCCTCGACATATCATCCCCTTCTTT
CAAAAAGGGTGCCGTCCGGTGTACCAACTCCTCCATCCCTTCCTCCCCCT
CCAGCGCCTTCTCAACCATCGCGTCTAACTCCTGCTGGGCGTTCGAAGCC
TCCTTGCCTCCCTTCTTCATGCCCTCCTTCCCTTCCTCCGCCGTACTCAT
CCTTTCCACCTCCTCCGCAAGACTCCCATAAGGGTCATCAAAACTTATCC
CCTCCCCCGCCGTGGTCCACCTGGCCTGGTGCTCCGCCTCGTCCAGCGGC
GAGTCCCGTCCATACAATCGACCAATGGCTGCCACTACCTGATCGTACGC
TGCAAACCTAAGCACCGCCTCCCCCTTTAAATTTCCTTTCCGACTTCTTG
GAAAGTCAACCTGAAACGGCTCGTAACCTCCTTTCAAAATCTCCCGCACA
TCCTCCTCCGTGGTATCGAGCGGTAGCCCCTTCACCCTCAAGCGATACAC
TGCCCATGCCTTCCTCAATTTGAGGTCCGGCAGCCCCGTGCCCGAGAGCT
GGGAGAAGGCAAGTTCGGCCTCCGGACGCGTGGTGAATGAGACACTAC
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protein sequence of jgi.p|Nanoce1779_2|583938

>mRNA_2952-protein ID=mRNA_2952-protein|Name=jgi.p|Nanoce1779_2|583938|organism=Nannochloropsis oceanica|type=polypeptide|length=91bp
MAADRFNINRSWEHLQNKYVGTGHPDLTKHEWLTNQHRDTYATHLGHHDQ
LAYIAVAQNDAVGRVRYQMLEKMLQPCGPPPAAKDDEDED*
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mRNA from alignment at scaffold_7:330999..333307-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2952 ID=mRNA_2952|Name=jgi.p|Nanoce1779_2|583938|organism=Nannochloropsis oceanica|type=mRNA|length=2309bp|location=Sequence derived from alignment at scaffold_7:330999..333307- (Nannochloropsis oceanica)
CAGCACCTTACACACAAGCCACAGTAGCCAACGTGAGCCCCCCATCAACA
CAGGTAGCCGTAGCAGCATAGAAGCGGTAGGAGCCCAGCAGCGAAAGCAG
AGCTTCTACAATCATGGTAAGTCTTCAGTCTTCCCTCCCCCTTCCTACGA
AGGGACCGTCATCACGGCTTTCCGTCATCACGATGCAGCCACTCACCCAC
GCCTCATGTCGACGTACAGGCGGCCGACCGATTTAACATAAACCGTAGTT
GGGAGCATTTGCAAAATAAGTATGTGGGCACAGGTCACCCAGACCTGACC
AAACAGTAAGTGCTCGCGGGCAGGGAGTAAGAGAGGGCTTCGGGGTCGAT
GATAATGCGGGGAGCGTGGTTGAGAGGCACACGTGAGCTCATTTCCAGCC
GCCCATAATCCTAAGCGTATTTATGCATCGAGAGCAGTCTTATTGGCCTT
ATCGTAGGCGTATCATGTGGTATACTTTATAAAAGAGGCGTTGGTTGTCT
GGCGGTGTTCTCATCCCTCCTCTTGTTCTGCGTGCCATGTCCCTTTCCCA
CTCGTCTGTCCCACTTTCCGCTCCCAACAGTGAATGGCTGACAAATCAGC
ACCGAGACACCTACGCCACCCATCTGGGCCACCACGACCAGCTGGCTTAC
ATTGCCGTCGCGCAAAATGACGCCGTGGGGCGTGTCCGCTACCAGATGCT
CGAGAAGATGTTACAGCCTTGCGGGCCACCACCTGCGGCAAAGGATGACG
AAGATGAGGATTAAGCGGACATGCGGAAGGAAGATAGTAAGGGTGTAATA
AAGTATGCTTTCGGAGAAGAATGGACGAAAAACACAAAACACTTAAAGAC
GTAAATATCAACTCCTTTCTTGGTATGGCAGAGTTGTACTTGTTCTTTCT
CGTGCTTCGTATACCATCTCGTGCTTCGTATACCATCCCGTCACACCACC
AGCACAAACCACAACAAAGGCAAGTCAATCTTTGGTGTCACATTTTATGT
GTCTTTCTTTCATGTGCTTCTGCTCCTATCGTGGGTTGTCGGGGCGCTAT
TCAAGTCCTTCACCCTCCTTCCCTTCCCCCCCTCTTCTACCCCTCCCTCT
ACAAGCCCAAATACCTTGCCTTGGACACACTTATCAACCTCCTCCCCCTC
TTCCTCGACAACTCCTCCACCCCCTCATGCTTCGAAATCGCGTGGAAAAT
AGCGCGAACAACCGAATAGGGGTTCCGCCTCCCCACACTCCTCGCCTCGC
CGCACTCTACCCCAAGGACCCTCAGTATATCATTTATCATCCTCCCCTCC
TTATGCGGCCTTCCTGGATGCCCCGCTTGAATATAGATCCGACAGTTGTT
ATGTTTTCCGTACAATGCCGTCGTCACGCACCGATTCCGGTACAAGTCCA
CGTGAATCAAATTCTTCTTCGCGGCCCGATACGCCCGTATCTGCGCCTCC
TCCATGCTAGGCGCCTTCCCCACCCCATATCCACCGCACCCGTTAAGATT
CCCCACCACCACCAACGCCCGATATGAGAGGATGTGCCCCCCTTTGATGA
TCTTCTGCGTCGTGTCCGTGTCCACCAACATCTTCACCCACTTTCCTTCC
GGGTAAATTCCAAACGGATTCACAGACTCCTTGTCTCTCCCTTCGTCCTC
ATCCTCCTCCTCCTCCTCCTCCTCTTTTTCATCTTCCGGAGACAAGCCTA
AGCCAGACCCTCTCTCCGTCCCTCCCTCCTCCCCATGCCTCGACATATCA
TCCCCTTCTTTCAAAAAGGGTGCCGTCCGGTGTACCAACTCCTCCATCCC
TTCCTCCCCCTCCAGCGCCTTCTCAACCATCGCGTCTAACTCCTGCTGGG
CGTTCGAAGCCTCCTTGCCTCCCTTCTTCATGCCCTCCTTCCCTTCCTCC
GCCGTACTCATCCTTTCCACCTCCTCCGCAAGACTCCCATAAGGGTCATC
AAAACTTATCCCCTCCCCCGCCGTGGTCCACCTGGCCTGGTGCTCCGCCT
CGTCCAGCGGCGAGTCCCGTCCATACAATCGACCAATGGCTGCCACTACC
TGATCGTACGCTGCAAACCTAAGCACCGCCTCCCCCTTTAAATTTCCTTT
CCGACTTCTTGGAAAGTCAACCTGAAACGGCTCGTAACCTCCTTTCAAAA
TCTCCCGCACATCCTCCTCCGTGGTATCGAGCGGTAGCCCCTTCACCCTC
AAGCGATACACTGCCCATGCCTTCCTCAATTTGAGGTCCGGCAGCCCCGT
GCCCGAGAGCTGGGAGAAGGCAAGTTCGGCCTCCGGACGCGTGGTGAATG
AGACACTAC
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Coding sequence (CDS) from alignment at scaffold_7:330999..333307-

>mRNA_2952 ID=mRNA_2952|Name=jgi.p|Nanoce1779_2|583938|organism=Nannochloropsis oceanica|type=CDS|length=819bp|location=Sequence derived from alignment at scaffold_7:330999..333307- (Nannochloropsis oceanica)
TGAATGGCTGACAAATCAGCACCGAGACACCTACGCCACCCATCTGGGCC
ACCACGACCAGCTGGCTTACATTGCCGTCGCGCAAAATGACGCCGTGGGG
CGTGTCCGCTACCAGATGCTCGAGAAGATGTTACAGCCTTGCGGGCCACC
ACCTGCGGCAAAGGATGACGAAGATGAGGATTAAGCGGCCGACCGATTTA
ACATAAACCGTAGTTGGGAGCATTTGCAAAATAAGTATGTGGGCACAGGT
CACCCAGACCTGACCAAACAATGTGAATGGCTGACAAATCAGCACCGAGA
CACCTACGCCACCCATCTGGGCCACCACGACCAGCTGGCTTACATTGCCG
TCGCGCAAAATGACGCCGTGGGGCGTGTCCGCTACCAGATGCTCGAGAAG
ATGTTACAGCCTTGCGGGCCACCACCTGCGGCAAAGGATGACGAAGATGA
GGATTAAGCGGCCGACCGATTTAACATAAACCGTAGTTGGGAGCATTTGC
AAAATAAGTATGTGGGCACAGGTCACCCAGACCTGACCAAACAATGTGAA
TGGCTGACAAATCAGCACCGAGACACCTACGCCACCCATCTGGGCCACCA
CGACCAGCTGGCTTACATTGCCGTCGCGCAAAATGACGCCGTGGGGCGTG
TCCGCTACCAGATGCTCGAGAAGATGTTACAGCCTTGCGGGCCACCACCT
GCGGCAAAGGATGACGAAGATGAGGATTAAGCGGCCGACCGATTTAACAT
AAACCGTAGTTGGGAGCATTTGCAAAATAAGTATGTGGGCACAGGTCACC
CAGACCTGACCAAACAATG
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Synonyms
Publications