jgi.p|Nanoce1779_2|583944, mRNA_2951 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|583944
Unique Name	mRNA_2951
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2428
Alignment location	scaffold_7:330999..333426 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	584030
Track	FilteredModels2
ProteinId	583944

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:330999..333426 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583944	gene_2951	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583944	mRNA_2951-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2951	CDS_2951	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:330999..333426+
coding sequence from alignment at scaffold_7:330999..333426+

mRNA sequence

>mRNA_2951 ID=mRNA_2951|Name=jgi.p|Nanoce1779_2|583944|organism=Nannochloropsis oceanica|type=mRNA|length=2428bp
GTAGTGTCTCATTCACCACGCGTCCGGAGGCCGAACTTGCCTTCTCCCAG
CTCTCGGGCACGGGGCTGCCGGACCTCAAATTGAGGAAGGCATGGGCAGT
GTATCGCTTGAGGGTGAAGGGGCTACCGCTCGATACCACGGAGGAGGATG
TGCGGGAGATTTTGAAAGGAGGTTACGAGCCGTTTCAGGTTGACTTTCCA
AGAAGTCGGAAAGGAAATTTAAAGGGGGAGGCGGTGCTTAGGTTTGCAGC
GTACGATCAGGTAGTGGCAGCCATTGGTCGATTGTATGGACGGGACTCGC
CGCTGGACGAGGCGGAGCACCAGGCCAGGTGGACCACGGCGGGGGAGGGG
ATAAGTTTTGATGACCCTTATGGGAGTCTTGCGGAGGAGGTGGAAAGGAT
GAGTACGGCGGAGGAAGGGAAGGAGGGCATGAAGAAGGGAGGCAAGGAGG
CTTCGAACGCCCAGCAGGAGTTAGACGCGATGGTTGAGAAGGCGCTGGAG
GGGGAGGAAGGGATGGAGGAGTTGGTACACCGGACGGCACCCTTTTTGAA
AGAAGGGGATGATATGTCGAGGCATGGGGAGGAGGGAGGGACGGAGAGAG
GGTCTGGCTTAGGCTTGTCTCCGGAAGATGAAAAAGAGGAGGAGGAGGAG
GAGGAGGATGAGGACGAAGGGAGAGACAAGGAGTCTGTGAATCCGTTTGG
AATTTACCCGGAAGGAAAGTGGGTGAAGATGTTGGTGGACACGGACACGA
CGCAGAAGATCATCAAAGGGGGGCACATCCTCTCATATCGGGCGTTGGTG
GTGGTGGGGAATCTTAACGGGTGCGGTGGATATGGGGTGGGGAAGGCGCC
TAGCATGGAGGAGGCGCAGATACGGGCGTATCGGGCCGCGAAGAAGAATT
TGATTCACGTGGACTTGTACCGGAATCGGTGCGTGACGACGGCATTGTAC
GGAAAACATAACAACTGTCGGATCTATATTCAAGCGGGGCATCCAGGAAG
GCCGCATAAGGAGGGGAGGATGATAAATGATATACTGAGGGTCCTTGGGG
TAGAGTGCGGCGAGGCGAGGAGTGTGGGGAGGCGGAACCCCTATTCGGTT
GTTCGCGCTATTTTCCACGCGATTTCGAAGCATGAGGGGGTGGAGGAGTT
GTCGAGGAAGAGGGGGAGGAGGTTGATAAGTGTGTCCAAGGCAAGGTATT
TGGGCTTGTAGAGGGAGGGGTAGAAGAGGGGGGGAAGGGAAGGAGGGTGA
AGGACTTGAATAGCGCCCCGACAACCCACGATAGGAGCAGAAGCACATGA
AAGAAAGACACATAAAATGTGACACCAAAGATTGACTTGCCTTTGTTGTG
GTTTGTGCTGGTGGTGTGACGGGATGGTATACGAAGCACGAGATGGTATA
CGAAGCACGAGAAAGAACAAGTACAACTCTGCCATACCAAGAAAGGAGTT
GATATTTACGTCTTTAAGTGTTTTGTGTTTTTCGTCCATTCTTCTCCGAA
AGCATACTTTATTACACCCTTACTATCTTCCTTCCGCATGTCCGCTTAAT
CCTCATCTTCGTCATCCTTTGCCGCAGGTGGTGGCCCGCAAGGCTGTAAC
ATCTTCTCGAGCATCTGGTAGCGGACACGCCCCACGGCGTCATTTTGCGC
GACGGCAATGTAAGCCAGCTGGTCGTGGTGGCCCAGATGGGTGGCGTAGG
TGTCTCGGTGCTGATTTGTCAGCCATTCACTGTTGGGAGCGGAAAGTGGG
ACAGACGAGTGGGAAAGGGACATGGCACGCAGAACAAGAGGAGGGATGAG
AACACCGCCAGACAACCAACGCCTCTTTTATAAAGTATACCACATGATAC
GCCTACGATAAGGCCAATAAGACTGCTCTCGATGCATAAATACGCTTAGG
ATTATGGGCGGCTGGAAATGAGCTCACGTGTGCCTCTCAACCACGCTCCC
CGCATTATCATCGACCCCGAAGCCCTCTCTTACTCCCTGCCCGCGAGCAC
TTACTGTTTGGTCAGGTCTGGGTGACCTGTGCCCACATACTTATTTTGCA
AATGCTCCCAACTACGGTTTATGTTAAATCGGTCGGCCGCCTGTACGTCG
ACATGAGGCGTGGGTGAGTGGCTGCATCGTGATGACGGAAAGCCGTGATG
ACGGTCCCTTCGTAGGAAGGGGGAGGGAAGACTGAAGACTTACCATGATT
GTAGAAGCTCTGCTTTCGCTGCTGGGCTCCTACCGCTTCTATGCTGCTAC
GGCTACCTGTGTTGATGGGGGGCTCACGTTGGCTACTGTGGCTTGTGTGT
AAGGTGCTGCGTTTCAGGGAGAAGGAAAGCTTTGAGCGGTTGAAGAACGA
GACCGTCTGACCCCGCCATTACATTGTACTATATCCTTATCGGAGAGTCA
CTTCCATCCCTATTCACACACACCGATG

protein sequence of jgi.p|Nanoce1779_2|583944

>mRNA_2951-protein ID=mRNA_2951-protein|Name=jgi.p|Nanoce1779_2|583944|organism=Nannochloropsis oceanica|type=polypeptide|length=271bp
MSTAEEGKEGMKKGGKEASNAQQELDAMVEKALEGEEGMEELVHRTAPFL
KEGDDMSRHGEEGGTERGSGLGLSPEDEKEEEEEEEDEDEGRDKESVNPF
GIYPEGKWVKMLVDTDTTQKIIKGGHILSYRALVVVGNLNGCGGYGVGKA
PSMEEAQIRAYRAAKKNLIHVDLYRNRCVTTALYGKHNNCRIYIQAGHPG
RPHKEGRMINDILRVLGVECGEARSVGRRNPYSVVRAIFHAISKHEGVEE
LSRKRGRRLISVSKARYLGL*

mRNA from alignment at scaffold_7:330999..333426+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2951 ID=mRNA_2951|Name=jgi.p|Nanoce1779_2|583944|organism=Nannochloropsis oceanica|type=mRNA|length=2428bp|location=Sequence derived from alignment at scaffold_7:330999..333426+ (Nannochloropsis oceanica)
GTAGTGTCTCATTCACCACGCGTCCGGAGGCCGAACTTGCCTTCTCCCAG
CTCTCGGGCACGGGGCTGCCGGACCTCAAATTGAGGAAGGCATGGGCAGT
GTATCGCTTGAGGGTGAAGGGGCTACCGCTCGATACCACGGAGGAGGATG
TGCGGGAGATTTTGAAAGGAGGTTACGAGCCGTTTCAGGTTGACTTTCCA
AGAAGTCGGAAAGGAAATTTAAAGGGGGAGGCGGTGCTTAGGTTTGCAGC
GTACGATCAGGTAGTGGCAGCCATTGGTCGATTGTATGGACGGGACTCGC
CGCTGGACGAGGCGGAGCACCAGGCCAGGTGGACCACGGCGGGGGAGGGG
ATAAGTTTTGATGACCCTTATGGGAGTCTTGCGGAGGAGGTGGAAAGGAT
GAGTACGGCGGAGGAAGGGAAGGAGGGCATGAAGAAGGGAGGCAAGGAGG
CTTCGAACGCCCAGCAGGAGTTAGACGCGATGGTTGAGAAGGCGCTGGAG
GGGGAGGAAGGGATGGAGGAGTTGGTACACCGGACGGCACCCTTTTTGAA
AGAAGGGGATGATATGTCGAGGCATGGGGAGGAGGGAGGGACGGAGAGAG
GGTCTGGCTTAGGCTTGTCTCCGGAAGATGAAAAAGAGGAGGAGGAGGAG
GAGGAGGATGAGGACGAAGGGAGAGACAAGGAGTCTGTGAATCCGTTTGG
AATTTACCCGGAAGGAAAGTGGGTGAAGATGTTGGTGGACACGGACACGA
CGCAGAAGATCATCAAAGGGGGGCACATCCTCTCATATCGGGCGTTGGTG
GTGGTGGGGAATCTTAACGGGTGCGGTGGATATGGGGTGGGGAAGGCGCC
TAGCATGGAGGAGGCGCAGATACGGGCGTATCGGGCCGCGAAGAAGAATT
TGATTCACGTGGACTTGTACCGGAATCGGTGCGTGACGACGGCATTGTAC
GGAAAACATAACAACTGTCGGATCTATATTCAAGCGGGGCATCCAGGAAG
GCCGCATAAGGAGGGGAGGATGATAAATGATATACTGAGGGTCCTTGGGG
TAGAGTGCGGCGAGGCGAGGAGTGTGGGGAGGCGGAACCCCTATTCGGTT
GTTCGCGCTATTTTCCACGCGATTTCGAAGCATGAGGGGGTGGAGGAGTT
GTCGAGGAAGAGGGGGAGGAGGTTGATAAGTGTGTCCAAGGCAAGGTATT
TGGGCTTGTAGAGGGAGGGGTAGAAGAGGGGGGGAAGGGAAGGAGGGTGA
AGGACTTGAATAGCGCCCCGACAACCCACGATAGGAGCAGAAGCACATGA
AAGAAAGACACATAAAATGTGACACCAAAGATTGACTTGCCTTTGTTGTG
GTTTGTGCTGGTGGTGTGACGGGATGGTATACGAAGCACGAGATGGTATA
CGAAGCACGAGAAAGAACAAGTACAACTCTGCCATACCAAGAAAGGAGTT
GATATTTACGTCTTTAAGTGTTTTGTGTTTTTCGTCCATTCTTCTCCGAA
AGCATACTTTATTACACCCTTACTATCTTCCTTCCGCATGTCCGCTTAAT
CCTCATCTTCGTCATCCTTTGCCGCAGGTGGTGGCCCGCAAGGCTGTAAC
ATCTTCTCGAGCATCTGGTAGCGGACACGCCCCACGGCGTCATTTTGCGC
GACGGCAATGTAAGCCAGCTGGTCGTGGTGGCCCAGATGGGTGGCGTAGG
TGTCTCGGTGCTGATTTGTCAGCCATTCACTGTTGGGAGCGGAAAGTGGG
ACAGACGAGTGGGAAAGGGACATGGCACGCAGAACAAGAGGAGGGATGAG
AACACCGCCAGACAACCAACGCCTCTTTTATAAAGTATACCACATGATAC
GCCTACGATAAGGCCAATAAGACTGCTCTCGATGCATAAATACGCTTAGG
ATTATGGGCGGCTGGAAATGAGCTCACGTGTGCCTCTCAACCACGCTCCC
CGCATTATCATCGACCCCGAAGCCCTCTCTTACTCCCTGCCCGCGAGCAC
TTACTGTTTGGTCAGGTCTGGGTGACCTGTGCCCACATACTTATTTTGCA
AATGCTCCCAACTACGGTTTATGTTAAATCGGTCGGCCGCCTGTACGTCG
ACATGAGGCGTGGGTGAGTGGCTGCATCGTGATGACGGAAAGCCGTGATG
ACGGTCCCTTCGTAGGAAGGGGGAGGGAAGACTGAAGACTTACCATGATT
GTAGAAGCTCTGCTTTCGCTGCTGGGCTCCTACCGCTTCTATGCTGCTAC
GGCTACCTGTGTTGATGGGGGGCTCACGTTGGCTACTGTGGCTTGTGTGT
AAGGTGCTGCGTTTCAGGGAGAAGGAAAGCTTTGAGCGGTTGAAGAACGA
GACCGTCTGACCCCGCCATTACATTGTACTATATCCTTATCGGAGAGTCA
CTTCCATCCCTATTCACACACACCGATG

Coding sequence (CDS) from alignment at scaffold_7:330999..333426+

>mRNA_2951 ID=mRNA_2951|Name=jgi.p|Nanoce1779_2|583944|organism=Nannochloropsis oceanica|type=CDS|length=813bp|location=Sequence derived from alignment at scaffold_7:330999..333426+ (Nannochloropsis oceanica)
ATGAGTACGGCGGAGGAAGGGAAGGAGGGCATGAAGAAGGGAGGCAAGGA
GGCTTCGAACGCCCAGCAGGAGTTAGACGCGATGGTTGAGAAGGCGCTGG
AGGGGGAGGAAGGGATGGAGGAGTTGGTACACCGGACGGCACCCTTTTTG
AAAGAAGGGGATGATATGTCGAGGCATGGGGAGGAGGGAGGGACGGAGAG
AGGGTCTGGCTTAGGCTTGTCTCCGGAAGATGAAAAAGAGGAGGAGGAGG
AGGAGGAGGATGAGGACGAAGGGAGAGACAAGGAGTCTGTGAATCCGTTT
GGAATTTACCCGGAAGGAAAGTGGGTGAAGATGTTGGTGGACACGGACAC
GACGCAGAAGATCATCAAAGGGGGGCACATCCTCTCATATCGGGCGTTGG
TGGTGGTGGGGAATCTTAACGGGTGCGGTGGATATGGGGTGGGGAAGGCG
CCTAGCATGGAGGAGGCGCAGATACGGGCGTATCGGGCCGCGAAGAAGAA
TTTGATTCACGTGGACTTGTACCGGAATCGGTGCGTGACGACGGCATTGT
ACGGAAAACATAACAACTGTCGGATCTATATTCAAGCGGGGCATCCAGGA
AGGCCGCATAAGGAGGGGAGGATGATAAATGATATACTGAGGGTCCTTGG
GGTAGAGTGCGGCGAGGCGAGGAGTGTGGGGAGGCGGAACCCCTATTCGG
TTGTTCGCGCTATTTTCCACGCGATTTCGAAGCATGAGGGGGTGGAGGAG
TTGTCGAGGAAGAGGGGGAGGAGGTTGATAAGTGTGTCCAAGGCAAGGTA
TTTGGGCTTGTAG

Synonyms

Publications