jgi.p|Nanoce1779_2|526692, mRNA_2950 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|526692
Unique NamemRNA_2950
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length468
Alignment locationscaffold_7:327916..328383 -

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Properties
Property NameValue
TranscriptId526778
TrackFilteredModels2
ProteinId526692
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:327916..328383 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|526692gene_2950Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2950CDS_2950Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|526692mRNA_2950-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2950 ID=mRNA_2950|Name=jgi.p|Nanoce1779_2|526692|organism=Nannochloropsis oceanica|type=mRNA|length=468bp
ATGATCGGCGCTGACACCGAAACCGGCGGCATCTGGGACCCGTTGGGCTT
GAGCCAAAACGAGGGGTCCATCCGCAAGTACCGTGAGTGCGAACTCAAGC
ATGGCCGCGTGGCCATGGCGGCCATGCTTGGCATATTTGTCCAGAGCGTG
TACCATCTTCCGGACGCCGTCTTCAACAACCCCCGCCCCCTGGCCGCTCT
TCAGCAAGTGTACGAGCAACGCCCGGAGGCGATCTGGCAGATCATCGTTG
GTCTCGGTGTGATTGAGTTCACGAGCGGAAGGCAAAAGGAGGACCGTGCC
CCCGGCGACCTTGGATTTGGTGCTTCCTTCATCCCCAAGTCGGAGGAAGA
GTTTGAGGTGCTGCAGTTGAAGGAGCTCAAGAACGGGCGGTTGGCAATGG
TCGCCTCCATGGGCGCTCTGCTTCAGGAGTACCTCACGGGCCAGGGACCC
GTCGAGCAAGTTTTGTAA
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protein sequence of jgi.p|Nanoce1779_2|526692

>mRNA_2950-protein ID=mRNA_2950-protein|Name=jgi.p|Nanoce1779_2|526692|organism=Nannochloropsis oceanica|type=polypeptide|length=156bp
MIGADTETGGIWDPLGLSQNEGSIRKYRECELKHGRVAMAAMLGIFVQSV
YHLPDAVFNNPRPLAALQQVYEQRPEAIWQIIVGLGVIEFTSGRQKEDRA
PGDLGFGASFIPKSEEEFEVLQLKELKNGRLAMVASMGALLQEYLTGQGP
VEQVL*
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mRNA from alignment at scaffold_7:327916..328383-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2950 ID=mRNA_2950|Name=jgi.p|Nanoce1779_2|526692|organism=Nannochloropsis oceanica|type=mRNA|length=468bp|location=Sequence derived from alignment at scaffold_7:327916..328383- (Nannochloropsis oceanica)
ATGATCGGCGCTGACACCGAAACCGGCGGCATCTGGGACCCGTTGGGCTT
GAGCCAAAACGAGGGGTCCATCCGCAAGTACCGTGAGTGCGAACTCAAGC
ATGGCCGCGTGGCCATGGCGGCCATGCTTGGCATATTTGTCCAGAGCGTG
TACCATCTTCCGGACGCCGTCTTCAACAACCCCCGCCCCCTGGCCGCTCT
TCAGCAAGTGTACGAGCAACGCCCGGAGGCGATCTGGCAGATCATCGTTG
GTCTCGGTGTGATTGAGTTCACGAGCGGAAGGCAAAAGGAGGACCGTGCC
CCCGGCGACCTTGGATTTGGTGCTTCCTTCATCCCCAAGTCGGAGGAAGA
GTTTGAGGTGCTGCAGTTGAAGGAGCTCAAGAACGGGCGGTTGGCAATGG
TCGCCTCCATGGGCGCTCTGCTTCAGGAGTACCTCACGGGCCAGGGACCC
GTCGAGCAAGTTTTGTAA
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Coding sequence (CDS) from alignment at scaffold_7:327916..328383-

>mRNA_2950 ID=mRNA_2950|Name=jgi.p|Nanoce1779_2|526692|organism=Nannochloropsis oceanica|type=CDS|length=468bp|location=Sequence derived from alignment at scaffold_7:327916..328383- (Nannochloropsis oceanica)
ATGATCGGCGCTGACACCGAAACCGGCGGCATCTGGGACCCGTTGGGCTT
GAGCCAAAACGAGGGGTCCATCCGCAAGTACCGTGAGTGCGAACTCAAGC
ATGGCCGCGTGGCCATGGCGGCCATGCTTGGCATATTTGTCCAGAGCGTG
TACCATCTTCCGGACGCCGTCTTCAACAACCCCCGCCCCCTGGCCGCTCT
TCAGCAAGTGTACGAGCAACGCCCGGAGGCGATCTGGCAGATCATCGTTG
GTCTCGGTGTGATTGAGTTCACGAGCGGAAGGCAAAAGGAGGACCGTGCC
CCCGGCGACCTTGGATTTGGTGCTTCCTTCATCCCCAAGTCGGAGGAAGA
GTTTGAGGTGCTGCAGTTGAAGGAGCTCAAGAACGGGCGGTTGGCAATGG
TCGCCTCCATGGGCGCTCTGCTTCAGGAGTACCTCACGGGCCAGGGACCC
GTCGAGCAAGTTTTGTAA
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Synonyms
Publications