jgi.p|Nanoce1779_2|576845, mRNA_295 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576845
Unique NamemRNA_295
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length472
Alignment locationscaffold_3:728775..729246 -

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Properties
Property NameValue
TranscriptId576931
TrackFilteredModels2
ProteinId576845
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:728775..729246 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576845gene_295Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576845mRNA_295-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_295CDS_295Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_295 ID=mRNA_295|Name=jgi.p|Nanoce1779_2|576845|organism=Nannochloropsis oceanica|type=mRNA|length=472bp
ATACATACACGTCGAACTTTCGTGTTGCAATAACCAACAAGATATTGCCT
TTTACTAGCCTGTCTTATCTTTTCGGGCTTGCAGTCGGCTACGCATTTAT
TATTTATTAGGCCATGGTACCCTTTCTCTTCTTGTCTTTGTCGTTAGTTT
TGTTGTTGGTGTTGCAGCTATTCCTGTTACTTCTTTTTCAGTTCGTTCCT
TTCCATCTTCTTCTTCCTCTTTATACCCACTTGCTTTGCGTATTCTGTCC
TTGCCGACCCTCTATCTCGTCCGGATGCACTCGAGTACGCCCAAAAGGAA
TAATTATTGCTTCTCCCCTGTCCCTTGCATTCCCTTACATGGCTCAATCT
TAATATGCGTCGCCTATCTACTCCTCATCCTCATCCTCATCCTCATCATC
TTCCTCATCATCTTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCATCACTCTCCTCTTACT
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protein sequence of jgi.p|Nanoce1779_2|576845

>mRNA_295-protein ID=mRNA_295-protein|Name=jgi.p|Nanoce1779_2|576845|organism=Nannochloropsis oceanica|type=polypeptide|length=80bp
MVPFLFLSLSLVLLLVLQLFLLLLFQFVPFHLLLPLYTHLLCVFCPCRPS
ISSGCTRVRPKGIIIASPLSLAFPYMAQS*
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mRNA from alignment at scaffold_3:728775..729246-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_295 ID=mRNA_295|Name=jgi.p|Nanoce1779_2|576845|organism=Nannochloropsis oceanica|type=mRNA|length=472bp|location=Sequence derived from alignment at scaffold_3:728775..729246- (Nannochloropsis oceanica)
ATACATACACGTCGAACTTTCGTGTTGCAATAACCAACAAGATATTGCCT
TTTACTAGCCTGTCTTATCTTTTCGGGCTTGCAGTCGGCTACGCATTTAT
TATTTATTAGGCCATGGTACCCTTTCTCTTCTTGTCTTTGTCGTTAGTTT
TGTTGTTGGTGTTGCAGCTATTCCTGTTACTTCTTTTTCAGTTCGTTCCT
TTCCATCTTCTTCTTCCTCTTTATACCCACTTGCTTTGCGTATTCTGTCC
TTGCCGACCCTCTATCTCGTCCGGATGCACTCGAGTACGCCCAAAAGGAA
TAATTATTGCTTCTCCCCTGTCCCTTGCATTCCCTTACATGGCTCAATCT
TAATATGCGTCGCCTATCTACTCCTCATCCTCATCCTCATCCTCATCATC
TTCCTCATCATCTTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCATCACTCTCCTCTTACT
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Coding sequence (CDS) from alignment at scaffold_3:728775..729246-

>mRNA_295 ID=mRNA_295|Name=jgi.p|Nanoce1779_2|576845|organism=Nannochloropsis oceanica|type=CDS|length=240bp|location=Sequence derived from alignment at scaffold_3:728775..729246- (Nannochloropsis oceanica)
ATGGTACCCTTTCTCTTCTTGTCTTTGTCGTTAGTTTTGTTGTTGGTGTT
GCAGCTATTCCTGTTACTTCTTTTTCAGTTCGTTCCTTTCCATCTTCTTC
TTCCTCTTTATACCCACTTGCTTTGCGTATTCTGTCCTTGCCGACCCTCT
ATCTCGTCCGGATGCACTCGAGTACGCCCAAAAGGAATAATTATTGCTTC
TCCCCTGTCCCTTGCATTCCCTTACATGGCTCAATCTTAA
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Synonyms
Publications