jgi.p|Nanoce1779_2|583923, mRNA_2947 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|583923
Unique Name	mRNA_2947
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1861
Alignment location	scaffold_7:320948..322808 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	584009
Track	FilteredModels2
ProteinId	583923

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:320948..322808 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583923	gene_2947	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583923	mRNA_2947-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2947	CDS_2947	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:320948..322808+
coding sequence from alignment at scaffold_7:320948..322808+

mRNA sequence

>mRNA_2947 ID=mRNA_2947|Name=jgi.p|Nanoce1779_2|583923|organism=Nannochloropsis oceanica|type=mRNA|length=1861bp
CGCTGACGGAGCAAGTAAGTGAAGCAGAGGCTGATGCCGCCGCGGCGGCG
GCAGCAGCAGCAGCAGCAGCAGCAGCACCAGCACCAGCAGCAGCAGCACC
AGTAGCAGCACGAGCACCGATGGCAAACGGAAATGTGGTTCGATCATCTG
CTCGACGGGTCTATGGTAATTTTGACAATAATTACAATCCCCATCGAAGC
GGAGGAGAACGAGGAGCTGAAGGCCCACCATCTTTTCGACGGCAAGTGCA
GTCGCAACAGCATTCGCAGATGCAGCAGCAGCAGCGGGGGCGACATCAGG
GAGAAGGGATGGAAGAAGGAAAATCGGGGGAAGAAATTTTGGCCCCGAGG
GAAATGCTGGGTCTGCGGAAGCGTCATCCTGCTGCGCGCTCTGTTGCCGC
GTCTGCTGCAGCAGGGGAGAGTGACAGCAGTCCTGCGCCGCCAAGGAGAG
AGCAGCAAAGAGACGGAGGACGAGGGGGGGGAGAAGAAGCAAATCGTCGG
GCAGCAGCTGCAGCAGCCGACGAGGATGAGGAAGCCAGCGACGAGGAGGA
TTTTGCTTTGGGCGACAACACCACCGCAGCCACCACCGGCAATAGGAATA
GCAACAACATCAACAACAACATCAGCAACGAGAATAACGACAACGTTTTG
AAAGACCGTCGTGTCGTGTCGAGCCAAATAAAAGATACGAAATTGACTGA
GTACATCAAGGACAAGAAGAAAGCGCGTTCCACCCGTGACCGTTTCCTGG
CCGACACTGGCTTGGTCCGCAGCGAAGTCCACCCTCCACAGCGCTTCATC
GAAGTGTATTACAACTCGTGGGCGGACGATTTTTACACGGCTATCACCAC
AAGTTCTTCGTGTTTTGGCCCTCGGTGGTGGTTTAGGGAAGCCTTGGGGC
ACGACCCTCATGAAGTGATGGCATGGGTCAGGGAGTGGGAGACAAAGGCA
CGAAAACATGATGTGTTATCAGAGGGGGTAGAGAGGGTGATTCGGGAGGC
GATGGAGGTGGGGGGATCGGGAGAAGAGGACAATCCAAGTGTGGAGACAG
AGAGGTTCTTGGCGTTGAAGGCCCGATTAAGGGAGAGGAGGGAGCCGAAG
GTAATAGCGATTGGCGATGTGCATGGGTGTATCGAGGAGTTGCGAGCACT
AATCAAAAAAGCAGAGTATGGTCCCGGGGACTTGCTTGTATTTTTGGGGG
ACTTGGTGGCGAAAGGTCCGGAAAGCATTCAAGTTATCAGATTGGCGAGG
GAGATTGGGGCGTTGTCAGTGAGGGGGAATCATGAGAATGAGGTGATTAG
GTGGAGTCGGGCTCTGGCTTTGGGGGCTCAGAGTAACTTTAAGAGTGAAC
ATTATTTGATTGCCATGGGATTGGAAGAGGCGGATGTGGAATGGCTGCGA
AATTTACCCTGGTATATCTCATGCTCGGACTTACAATTGTTGTTCGTCCA
TGCGGGGTTTGTTGCGAATCAACGCTTGTCGAAGCAGCATCCGAGGTTCA
TGATTAACATGAGGTCGATTTTGGCTGATGGGACCGTGAGTGCACGATAT
TATCAAGATTATCCGTGGGCGAGGACGTGGCAAGGGCCCCAGACTGTGTT
GTTCGGCCATGATGCGCGAAGGGGGATGCAAGACTACGAACAGGCCTTGG
GTTTGGACACCGGCTGTGTGTATGGCGGTAATTTGACGGCGTGTGTGCTT
CCAGGGAAGGAGTTGGTGCAGGTCCCGGCGGCGGAGCCGTATATCGTGAA
TCGCTATGACAGGATCATGAAAAGGGCGCAGATGCTTCAGAAGGAGGGGC
TGGGTGGAGGGGAGGGTGGCGGAGTGGAGATTGAAGGAGGAGGGAAGAAG
TAGCAGTAGGG

protein sequence of jgi.p|Nanoce1779_2|583923

>mRNA_2947-protein ID=mRNA_2947-protein|Name=jgi.p|Nanoce1779_2|583923|organism=Nannochloropsis oceanica|type=polypeptide|length=578bp
MANGNVVRSSARRVYGNFDNNYNPHRSGGERGAEGPPSFRRQVQSQQHSQ
MQQQQRGRHQGEGMEEGKSGEEILAPREMLGLRKRHPAARSVAASAAAGE
SDSSPAPPRREQQRDGGRGGGEEANRRAAAAAADEDEEASDEEDFALGDN
TTAATTGNRNSNNINNNISNENNDNVLKDRRVVSSQIKDTKLTEYIKDKK
KARSTRDRFLADTGLVRSEVHPPQRFIEVYYNSWADDFYTAITTSSSCFG
PRWWFREALGHDPHEVMAWVREWETKARKHDVLSEGVERVIREAMEVGGS
GEEDNPSVETERFLALKARLRERREPKVIAIGDVHGCIEELRALIKKAEY
GPGDLLVFLGDLVAKGPESIQVIRLAREIGALSVRGNHENEVIRWSRALA
LGAQSNFKSEHYLIAMGLEEADVEWLRNLPWYISCSDLQLLFVHAGFVAN
QRLSKQHPRFMINMRSILADGTVSARYYQDYPWARTWQGPQTVLFGHDAR
RGMQDYEQALGLDTGCVYGGNLTACVLPGKELVQVPAAEPYIVNRYDRIM
KRAQMLQKEGLGGGEGGGVEIEGGGKK*

mRNA from alignment at scaffold_7:320948..322808+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2947 ID=mRNA_2947|Name=jgi.p|Nanoce1779_2|583923|organism=Nannochloropsis oceanica|type=mRNA|length=1861bp|location=Sequence derived from alignment at scaffold_7:320948..322808+ (Nannochloropsis oceanica)
CGCTGACGGAGCAAGTAAGTGAAGCAGAGGCTGATGCCGCCGCGGCGGCG
GCAGCAGCAGCAGCAGCAGCAGCAGCACCAGCACCAGCAGCAGCAGCACC
AGTAGCAGCACGAGCACCGATGGCAAACGGAAATGTGGTTCGATCATCTG
CTCGACGGGTCTATGGTAATTTTGACAATAATTACAATCCCCATCGAAGC
GGAGGAGAACGAGGAGCTGAAGGCCCACCATCTTTTCGACGGCAAGTGCA
GTCGCAACAGCATTCGCAGATGCAGCAGCAGCAGCGGGGGCGACATCAGG
GAGAAGGGATGGAAGAAGGAAAATCGGGGGAAGAAATTTTGGCCCCGAGG
GAAATGCTGGGTCTGCGGAAGCGTCATCCTGCTGCGCGCTCTGTTGCCGC
GTCTGCTGCAGCAGGGGAGAGTGACAGCAGTCCTGCGCCGCCAAGGAGAG
AGCAGCAAAGAGACGGAGGACGAGGGGGGGGAGAAGAAGCAAATCGTCGG
GCAGCAGCTGCAGCAGCCGACGAGGATGAGGAAGCCAGCGACGAGGAGGA
TTTTGCTTTGGGCGACAACACCACCGCAGCCACCACCGGCAATAGGAATA
GCAACAACATCAACAACAACATCAGCAACGAGAATAACGACAACGTTTTG
AAAGACCGTCGTGTCGTGTCGAGCCAAATAAAAGATACGAAATTGACTGA
GTACATCAAGGACAAGAAGAAAGCGCGTTCCACCCGTGACCGTTTCCTGG
CCGACACTGGCTTGGTCCGCAGCGAAGTCCACCCTCCACAGCGCTTCATC
GAAGTGTATTACAACTCGTGGGCGGACGATTTTTACACGGCTATCACCAC
AAGTTCTTCGTGTTTTGGCCCTCGGTGGTGGTTTAGGGAAGCCTTGGGGC
ACGACCCTCATGAAGTGATGGCATGGGTCAGGGAGTGGGAGACAAAGGCA
CGAAAACATGATGTGTTATCAGAGGGGGTAGAGAGGGTGATTCGGGAGGC
GATGGAGGTGGGGGGATCGGGAGAAGAGGACAATCCAAGTGTGGAGACAG
AGAGGTTCTTGGCGTTGAAGGCCCGATTAAGGGAGAGGAGGGAGCCGAAG
GTAATAGCGATTGGCGATGTGCATGGGTGTATCGAGGAGTTGCGAGCACT
AATCAAAAAAGCAGAGTATGGTCCCGGGGACTTGCTTGTATTTTTGGGGG
ACTTGGTGGCGAAAGGTCCGGAAAGCATTCAAGTTATCAGATTGGCGAGG
GAGATTGGGGCGTTGTCAGTGAGGGGGAATCATGAGAATGAGGTGATTAG
GTGGAGTCGGGCTCTGGCTTTGGGGGCTCAGAGTAACTTTAAGAGTGAAC
ATTATTTGATTGCCATGGGATTGGAAGAGGCGGATGTGGAATGGCTGCGA
AATTTACCCTGGTATATCTCATGCTCGGACTTACAATTGTTGTTCGTCCA
TGCGGGGTTTGTTGCGAATCAACGCTTGTCGAAGCAGCATCCGAGGTTCA
TGATTAACATGAGGTCGATTTTGGCTGATGGGACCGTGAGTGCACGATAT
TATCAAGATTATCCGTGGGCGAGGACGTGGCAAGGGCCCCAGACTGTGTT
GTTCGGCCATGATGCGCGAAGGGGGATGCAAGACTACGAACAGGCCTTGG
GTTTGGACACCGGCTGTGTGTATGGCGGTAATTTGACGGCGTGTGTGCTT
CCAGGGAAGGAGTTGGTGCAGGTCCCGGCGGCGGAGCCGTATATCGTGAA
TCGCTATGACAGGATCATGAAAAGGGCGCAGATGCTTCAGAAGGAGGGGC
TGGGTGGAGGGGAGGGTGGCGGAGTGGAGATTGAAGGAGGAGGGAAGAAG
TAGCAGTAGGG

Coding sequence (CDS) from alignment at scaffold_7:320948..322808+

>mRNA_2947 ID=mRNA_2947|Name=jgi.p|Nanoce1779_2|583923|organism=Nannochloropsis oceanica|type=CDS|length=1734bp|location=Sequence derived from alignment at scaffold_7:320948..322808+ (Nannochloropsis oceanica)
ATGGCAAACGGAAATGTGGTTCGATCATCTGCTCGACGGGTCTATGGTAA
TTTTGACAATAATTACAATCCCCATCGAAGCGGAGGAGAACGAGGAGCTG
AAGGCCCACCATCTTTTCGACGGCAAGTGCAGTCGCAACAGCATTCGCAG
ATGCAGCAGCAGCAGCGGGGGCGACATCAGGGAGAAGGGATGGAAGAAGG
AAAATCGGGGGAAGAAATTTTGGCCCCGAGGGAAATGCTGGGTCTGCGGA
AGCGTCATCCTGCTGCGCGCTCTGTTGCCGCGTCTGCTGCAGCAGGGGAG
AGTGACAGCAGTCCTGCGCCGCCAAGGAGAGAGCAGCAAAGAGACGGAGG
ACGAGGGGGGGGAGAAGAAGCAAATCGTCGGGCAGCAGCTGCAGCAGCCG
ACGAGGATGAGGAAGCCAGCGACGAGGAGGATTTTGCTTTGGGCGACAAC
ACCACCGCAGCCACCACCGGCAATAGGAATAGCAACAACATCAACAACAA
CATCAGCAACGAGAATAACGACAACGTTTTGAAAGACCGTCGTGTCGTGT
CGAGCCAAATAAAAGATACGAAATTGACTGAGTACATCAAGGACAAGAAG
AAAGCGCGTTCCACCCGTGACCGTTTCCTGGCCGACACTGGCTTGGTCCG
CAGCGAAGTCCACCCTCCACAGCGCTTCATCGAAGTGTATTACAACTCGT
GGGCGGACGATTTTTACACGGCTATCACCACAAGTTCTTCGTGTTTTGGC
CCTCGGTGGTGGTTTAGGGAAGCCTTGGGGCACGACCCTCATGAAGTGAT
GGCATGGGTCAGGGAGTGGGAGACAAAGGCACGAAAACATGATGTGTTAT
CAGAGGGGGTAGAGAGGGTGATTCGGGAGGCGATGGAGGTGGGGGGATCG
GGAGAAGAGGACAATCCAAGTGTGGAGACAGAGAGGTTCTTGGCGTTGAA
GGCCCGATTAAGGGAGAGGAGGGAGCCGAAGGTAATAGCGATTGGCGATG
TGCATGGGTGTATCGAGGAGTTGCGAGCACTAATCAAAAAAGCAGAGTAT
GGTCCCGGGGACTTGCTTGTATTTTTGGGGGACTTGGTGGCGAAAGGTCC
GGAAAGCATTCAAGTTATCAGATTGGCGAGGGAGATTGGGGCGTTGTCAG
TGAGGGGGAATCATGAGAATGAGGTGATTAGGTGGAGTCGGGCTCTGGCT
TTGGGGGCTCAGAGTAACTTTAAGAGTGAACATTATTTGATTGCCATGGG
ATTGGAAGAGGCGGATGTGGAATGGCTGCGAAATTTACCCTGGTATATCT
CATGCTCGGACTTACAATTGTTGTTCGTCCATGCGGGGTTTGTTGCGAAT
CAACGCTTGTCGAAGCAGCATCCGAGGTTCATGATTAACATGAGGTCGAT
TTTGGCTGATGGGACCGTGAGTGCACGATATTATCAAGATTATCCGTGGG
CGAGGACGTGGCAAGGGCCCCAGACTGTGTTGTTCGGCCATGATGCGCGA
AGGGGGATGCAAGACTACGAACAGGCCTTGGGTTTGGACACCGGCTGTGT
GTATGGCGGTAATTTGACGGCGTGTGTGCTTCCAGGGAAGGAGTTGGTGC
AGGTCCCGGCGGCGGAGCCGTATATCGTGAATCGCTATGACAGGATCATG
AAAAGGGCGCAGATGCTTCAGAAGGAGGGGCTGGGTGGAGGGGAGGGTGG
CGGAGTGGAGATTGAAGGAGGAGGGAAGAAGTAG

Synonyms

Publications