jgi.p|Nanoce1779_2|629231, mRNA_2945 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|629231
Unique Name	mRNA_2945
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2946
Alignment location	scaffold_7:316541..319486 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	629317
Track	FilteredModels2
ProteinId	629231

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:316541..319486 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|629231	gene_2945	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|629231	mRNA_2945-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2945	CDS_2945	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:316541..319486+
coding sequence from alignment at scaffold_7:316541..319486+

mRNA sequence

>mRNA_2945 ID=mRNA_2945|Name=jgi.p|Nanoce1779_2|629231|organism=Nannochloropsis oceanica|type=mRNA|length=2946bp
TCACAGAAAACACGTGCAATACGGACAAGACGAATTGGAGCGCCACTCCG
GACAGCAGCATCAAGCATGGACGCGCAACAGTACGACGAGGAACAAGCCA
TGGAATGCGAGTCACTGGAGTGCATCTTGATGGACGACTTGGAAGTGTTG
TCAACAACCACGCCTCGGCAATATAAGGTCCGCATCCTTCCCTTTGTAAA
TGGAGAGGGTGAAAATCACGTGGCTGTTCGTGCCACATTTAGCATCCCGC
CGACGTACCCCGATGTGCCGGCCGAGGTGAGCGTCGCGGCGGAGAAGGGG
CTGTCCTCAACACAATGCGACGCTTTGGAGCAAATAATGGGCGAGAAGGC
GACCGAGAATGTGGGCATGGCCATGGTGTATTTGTTGGTGGAAGTGATAC
GAGAGTGGTTGCTCGAACACAATATCGCAGGAGCGACTGATGGTTCCATG
CATGCGGAGATGCTAAAGCGAATGCATATGAAAGAAAAGGAACAGCAACG
TGCCACGGACGCCGAGGCCCGCGCTGCAAATGGGGCAGCCAACGCACAAT
TAAGCAAAGAAGATGAATTGATGCGACAGAGGAAGTTGGACGGTACGCCT
GTGACACCGGAGACGTTCATGGAATGGCGCGCGGTGTTCGATGCAGAAAT
GGCCGCAGTGGCAGCCAAGAAAGCAGGAGGGGGAGGAGGAGGAGGAGGGG
GAGGGAGGATGGCCAAAGCTACGACAACAGTGGATGACAGGCCTGAAAAA
CCGTCGGGGAAGCAGATGTTTTTGATGCATCTTGCTGGCACGGCGGATGA
GGATGAGGACGGTGCGCAGGAGGATGAGGAAGCTACGGGGGGGGAGGGAG
GAAAGTTGGAGGTAGATGCAGGGTTGTTTGACGAGGGGGATGATGATGAT
GACAGTGATTTTGAGCTAGATTCGGAGGACGAGGACGAGAACAGTGACGG
TGATAGTGATTATGGTTGCGGCGGCGAGAGCGAGGAGAGCGATGACGGTG
GGAAGGGGAAGAGTGGAAAAGGAGGGGGGGGGAGAGGCGGTGGTGGAAGA
GGAGGAAGGAGAGGCAAAAGAAGCTGAAAAAAGTACATCAACAGGCGATA
TGCAAGATTTTGAAGAACGTGGACATCTAGACAGAGAGTAAAAAAAAAAG
CACGTGTGAGACGCGACACGAGGAAGCAAGGGGGCATGTTTGTATGGTTT
ACGTACATCATTTTCTCGTCCTCGGTCTCAATTGTCTTGCTCTCTAGCAG
CACAGTATTGAACGCCTTCACTCACACTCTTCTTTCGCTCCCTTCTTGCC
TGCCTCCCGACTCCAGACCCACGCCAGCACACTCCCCAACACCGAATGAC
ATACTGCTGAGACTGCACCTGGCAAGCCTGACAGGGGGTGCGGCAGACTC
GACCGCGCCAGCACCACAGCGAGCGCTGAATTTTGCATTCCCGTTTCAAT
GGACACAGTCTTGGCAACTTGGCGATTAAAGCCCAAAAGCCTCGCCATTA
AAAACCCAAAAAAGAAACCAAACACATGTAACGTCACGATCGCTCCTAAC
AAGGGTACGCCCGCTTGTGCCACTGCCCCTGCATTTGTCGCGACTACTTT
ACCACAGATTGCAGCAACAAGCAAACCGGATAGAACGGGGGTGATCCGAG
AGAGGGCATGGGTGAGGGAGGGAGAGAGAGAGGGCAGGAGGTAGGTGTTG
GTAAGCAGGCCGAGGATGACAGGGAGGAGGACGACTTGCAAGGTGGTGCG
AAGAAGGGCGGTGGTGTCGACGGGGACAAGGGACCCCAAGAGAAGGGAGG
TGAGGAGGGGAGTCATTACCCCTGCAGTAAGGGTGGAGACGGCTGTCATG
CTGATGCTGAGGGCGACATCTGCGTTGGCGAGAAGGGTGACAAGGTTAGA
GGCGGTGCCGCCTGGACAGCAACCTGTAGTGTCGTTTGTGAAGTGAGGAA
GGGAAGGAGGAAGGATAAGGGTAAAGAAAAAACAAGTACGAATAGTAAAC
GAAGCGCTCTCCGCATGGCTCCCGGTAAGACACATACTAACCAACGAGGA
CGACCCCAGCTGCCAAATGTGGGGGAAGACGAAAGAGCCGCGACATCAAC
AAAGCTACAGTTGGCATTATCGAAAATTGTGCGCACCATCCTAGGGCTAC
CACCCGTTTACTACCACCTATCCGAGCGAAATCGTCCACGGAAAGGGTCA
TCCCCATGAGAACCATCACCGCGGACAAAGCCCGTGTGATAAACATCTCG
CTCAGGCAGTCATAGAGTTGGGGCCGAGTCGCACCTAGCAAGCCGGCCAG
CAGGACGTAAAAAGGGAAGTATAAACTTTTGGCGGCAGCAATCAAGGTCG
CTTTAGTACTCTTTTTCTTACGGTCTCCGTCTCCGCCGCCGCCATGGGCG
AATGGGCGCGGTGCAGACAGGGTGGAGAGGGCAGAGGTAGCAGTGGCGGA
AAGCGATAGCCTGCTGTGCCTGCTATTACCTCTGCCCCTCGTTAGAAAAG
CTCCGACTGCATCACTTTTCACTATAGCTCGATAGCAGCCCATCGTTGGC
CGCGCAGGATGTCTGGATACGAAGGCCTGGGCCAGGTCTGGCCCCATACA
AGGAAGCATCATAAGGAAAAAAGCAGTCGACCTCCTCACCATGGTGCTCG
TTAATGTGGTTGTTGGCTTGGAAAGCCGAAATGAGGCGGAGGCGAAAAGC
TGAAAAGGCAGAAGCCTGGCTGAAGAGATATGTCAGATGCTTGTGTAGCG
TAAGAGGTGAAAGCGCTTGGGATTAGAGTGCTGTATTACTGTATTACTTA
TGGGGCTTATTCCTCGGTGCTGTCGCCCGTCTTCAACCGCAACACCACCA
CGCGCAAACCTCGTTTCCTCTAGTGGCCTCAAGATTATTTACCTTGTAGT
CTTACGTATCACGAGCACGCATCAATAATTTCACCCTTCCCACTTC

protein sequence of jgi.p|Nanoce1779_2|629231

>mRNA_2945-protein ID=mRNA_2945-protein|Name=jgi.p|Nanoce1779_2|629231|organism=Nannochloropsis oceanica|type=polypeptide|length=337bp
MDAQQYDEEQAMECESLECILMDDLEVLSTTTPRQYKVRILPFVNGEGEN
HVAVRATFSIPPTYPDVPAEVSVAAEKGLSSTQCDALEQIMGEKATENVG
MAMVYLLVEVIREWLLEHNIAGATDGSMHAEMLKRMHMKEKEQQRATDAE
ARAANGAANAQLSKEDELMRQRKLDGTPVTPETFMEWRAVFDAEMAAVAA
KKAGGGGGGGGGGRMAKATTTVDDRPEKPSGKQMFLMHLAGTADEDEDGA
QEDEEATGGEGGKLEVDAGLFDEGDDDDDSDFELDSEDEDENSDGDSDYG
CGGESEESDDGGKGKSGKGGGGRGGGGRGGRRGKRS*

mRNA from alignment at scaffold_7:316541..319486+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2945 ID=mRNA_2945|Name=jgi.p|Nanoce1779_2|629231|organism=Nannochloropsis oceanica|type=mRNA|length=2946bp|location=Sequence derived from alignment at scaffold_7:316541..319486+ (Nannochloropsis oceanica)
TCACAGAAAACACGTGCAATACGGACAAGACGAATTGGAGCGCCACTCCG
GACAGCAGCATCAAGCATGGACGCGCAACAGTACGACGAGGAACAAGCCA
TGGAATGCGAGTCACTGGAGTGCATCTTGATGGACGACTTGGAAGTGTTG
TCAACAACCACGCCTCGGCAATATAAGGTCCGCATCCTTCCCTTTGTAAA
TGGAGAGGGTGAAAATCACGTGGCTGTTCGTGCCACATTTAGCATCCCGC
CGACGTACCCCGATGTGCCGGCCGAGGTGAGCGTCGCGGCGGAGAAGGGG
CTGTCCTCAACACAATGCGACGCTTTGGAGCAAATAATGGGCGAGAAGGC
GACCGAGAATGTGGGCATGGCCATGGTGTATTTGTTGGTGGAAGTGATAC
GAGAGTGGTTGCTCGAACACAATATCGCAGGAGCGACTGATGGTTCCATG
CATGCGGAGATGCTAAAGCGAATGCATATGAAAGAAAAGGAACAGCAACG
TGCCACGGACGCCGAGGCCCGCGCTGCAAATGGGGCAGCCAACGCACAAT
TAAGCAAAGAAGATGAATTGATGCGACAGAGGAAGTTGGACGGTACGCCT
GTGACACCGGAGACGTTCATGGAATGGCGCGCGGTGTTCGATGCAGAAAT
GGCCGCAGTGGCAGCCAAGAAAGCAGGAGGGGGAGGAGGAGGAGGAGGGG
GAGGGAGGATGGCCAAAGCTACGACAACAGTGGATGACAGGCCTGAAAAA
CCGTCGGGGAAGCAGATGTTTTTGATGCATCTTGCTGGCACGGCGGATGA
GGATGAGGACGGTGCGCAGGAGGATGAGGAAGCTACGGGGGGGGAGGGAG
GAAAGTTGGAGGTAGATGCAGGGTTGTTTGACGAGGGGGATGATGATGAT
GACAGTGATTTTGAGCTAGATTCGGAGGACGAGGACGAGAACAGTGACGG
TGATAGTGATTATGGTTGCGGCGGCGAGAGCGAGGAGAGCGATGACGGTG
GGAAGGGGAAGAGTGGAAAAGGAGGGGGGGGGAGAGGCGGTGGTGGAAGA
GGAGGAAGGAGAGGCAAAAGAAGCTGAAAAAAGTACATCAACAGGCGATA
TGCAAGATTTTGAAGAACGTGGACATCTAGACAGAGAGTAAAAAAAAAAG
CACGTGTGAGACGCGACACGAGGAAGCAAGGGGGCATGTTTGTATGGTTT
ACGTACATCATTTTCTCGTCCTCGGTCTCAATTGTCTTGCTCTCTAGCAG
CACAGTATTGAACGCCTTCACTCACACTCTTCTTTCGCTCCCTTCTTGCC
TGCCTCCCGACTCCAGACCCACGCCAGCACACTCCCCAACACCGAATGAC
ATACTGCTGAGACTGCACCTGGCAAGCCTGACAGGGGGTGCGGCAGACTC
GACCGCGCCAGCACCACAGCGAGCGCTGAATTTTGCATTCCCGTTTCAAT
GGACACAGTCTTGGCAACTTGGCGATTAAAGCCCAAAAGCCTCGCCATTA
AAAACCCAAAAAAGAAACCAAACACATGTAACGTCACGATCGCTCCTAAC
AAGGGTACGCCCGCTTGTGCCACTGCCCCTGCATTTGTCGCGACTACTTT
ACCACAGATTGCAGCAACAAGCAAACCGGATAGAACGGGGGTGATCCGAG
AGAGGGCATGGGTGAGGGAGGGAGAGAGAGAGGGCAGGAGGTAGGTGTTG
GTAAGCAGGCCGAGGATGACAGGGAGGAGGACGACTTGCAAGGTGGTGCG
AAGAAGGGCGGTGGTGTCGACGGGGACAAGGGACCCCAAGAGAAGGGAGG
TGAGGAGGGGAGTCATTACCCCTGCAGTAAGGGTGGAGACGGCTGTCATG
CTGATGCTGAGGGCGACATCTGCGTTGGCGAGAAGGGTGACAAGGTTAGA
GGCGGTGCCGCCTGGACAGCAACCTGTAGTGTCGTTTGTGAAGTGAGGAA
GGGAAGGAGGAAGGATAAGGGTAAAGAAAAAACAAGTACGAATAGTAAAC
GAAGCGCTCTCCGCATGGCTCCCGGTAAGACACATACTAACCAACGAGGA
CGACCCCAGCTGCCAAATGTGGGGGAAGACGAAAGAGCCGCGACATCAAC
AAAGCTACAGTTGGCATTATCGAAAATTGTGCGCACCATCCTAGGGCTAC
CACCCGTTTACTACCACCTATCCGAGCGAAATCGTCCACGGAAAGGGTCA
TCCCCATGAGAACCATCACCGCGGACAAAGCCCGTGTGATAAACATCTCG
CTCAGGCAGTCATAGAGTTGGGGCCGAGTCGCACCTAGCAAGCCGGCCAG
CAGGACGTAAAAAGGGAAGTATAAACTTTTGGCGGCAGCAATCAAGGTCG
CTTTAGTACTCTTTTTCTTACGGTCTCCGTCTCCGCCGCCGCCATGGGCG
AATGGGCGCGGTGCAGACAGGGTGGAGAGGGCAGAGGTAGCAGTGGCGGA
AAGCGATAGCCTGCTGTGCCTGCTATTACCTCTGCCCCTCGTTAGAAAAG
CTCCGACTGCATCACTTTTCACTATAGCTCGATAGCAGCCCATCGTTGGC
CGCGCAGGATGTCTGGATACGAAGGCCTGGGCCAGGTCTGGCCCCATACA
AGGAAGCATCATAAGGAAAAAAGCAGTCGACCTCCTCACCATGGTGCTCG
TTAATGTGGTTGTTGGCTTGGAAAGCCGAAATGAGGCGGAGGCGAAAAGC
TGAAAAGGCAGAAGCCTGGCTGAAGAGATATGTCAGATGCTTGTGTAGCG
TAAGAGGTGAAAGCGCTTGGGATTAGAGTGCTGTATTACTGTATTACTTA
TGGGGCTTATTCCTCGGTGCTGTCGCCCGTCTTCAACCGCAACACCACCA
CGCGCAAACCTCGTTTCCTCTAGTGGCCTCAAGATTATTTACCTTGTAGT
CTTACGTATCACGAGCACGCATCAATAATTTCACCCTTCCCACTTC

Coding sequence (CDS) from alignment at scaffold_7:316541..319486+

>mRNA_2945 ID=mRNA_2945|Name=jgi.p|Nanoce1779_2|629231|organism=Nannochloropsis oceanica|type=CDS|length=1011bp|location=Sequence derived from alignment at scaffold_7:316541..319486+ (Nannochloropsis oceanica)
ATGGACGCGCAACAGTACGACGAGGAACAAGCCATGGAATGCGAGTCACT
GGAGTGCATCTTGATGGACGACTTGGAAGTGTTGTCAACAACCACGCCTC
GGCAATATAAGGTCCGCATCCTTCCCTTTGTAAATGGAGAGGGTGAAAAT
CACGTGGCTGTTCGTGCCACATTTAGCATCCCGCCGACGTACCCCGATGT
GCCGGCCGAGGTGAGCGTCGCGGCGGAGAAGGGGCTGTCCTCAACACAAT
GCGACGCTTTGGAGCAAATAATGGGCGAGAAGGCGACCGAGAATGTGGGC
ATGGCCATGGTGTATTTGTTGGTGGAAGTGATACGAGAGTGGTTGCTCGA
ACACAATATCGCAGGAGCGACTGATGGTTCCATGCATGCGGAGATGCTAA
AGCGAATGCATATGAAAGAAAAGGAACAGCAACGTGCCACGGACGCCGAG
GCCCGCGCTGCAAATGGGGCAGCCAACGCACAATTAAGCAAAGAAGATGA
ATTGATGCGACAGAGGAAGTTGGACGGTACGCCTGTGACACCGGAGACGT
TCATGGAATGGCGCGCGGTGTTCGATGCAGAAATGGCCGCAGTGGCAGCC
AAGAAAGCAGGAGGGGGAGGAGGAGGAGGAGGGGGAGGGAGGATGGCCAA
AGCTACGACAACAGTGGATGACAGGCCTGAAAAACCGTCGGGGAAGCAGA
TGTTTTTGATGCATCTTGCTGGCACGGCGGATGAGGATGAGGACGGTGCG
CAGGAGGATGAGGAAGCTACGGGGGGGGAGGGAGGAAAGTTGGAGGTAGA
TGCAGGGTTGTTTGACGAGGGGGATGATGATGATGACAGTGATTTTGAGC
TAGATTCGGAGGACGAGGACGAGAACAGTGACGGTGATAGTGATTATGGT
TGCGGCGGCGAGAGCGAGGAGAGCGATGACGGTGGGAAGGGGAAGAGTGG
AAAAGGAGGGGGGGGGAGAGGCGGTGGTGGAAGAGGAGGAAGGAGAGGCA
AAAGAAGCTGA

Synonyms

Publications