jgi.p|Nanoce1779_2|583909, mRNA_2943 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583909
Unique NamemRNA_2943
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length903
Alignment locationscaffold_7:313941..315087 +

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Properties
Property NameValue
TranscriptId583995
TrackFilteredModels2
ProteinId583909
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:313941..315087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583909gene_2943Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583909mRNA_2943-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2943CDS_2943Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2943 ID=mRNA_2943|Name=jgi.p|Nanoce1779_2|583909|organism=Nannochloropsis oceanica|type=mRNA|length=903bp
ACAGGCTGCCGGACCTCATATCCGCTACCATGTCCACACAAAATGGGTTC
GTCCTTGCCTTCCTAGTTGCTGTTGCCCTCAACCAGGCCACCGCCTTTTT
CCTGCCCGCCTCTACCCCCATCCTCACCATGCGCTCAAGATCAGAAGCAC
CAGGACAAGAGCAACAAGGGATACAAAGAACAGAACGAACACGCGGGCTG
GCTTCCGCACAACTGCAGGAGGGCATGCACGGGACCGGCTCCCGCTTCCT
CTCAATCCAACAACTCAAAGGCGACGAGCTTATGCCACGTATCATCCCTA
TCGCTGGTGTCTACCCTGGTATCACCGTGCAAGAATTTATGGCACCCGCC
TCAACTCCCTCCCCTTCCTATGGCCGTTGGGCTTATGATTTTTCTGACCC
TGAGGGGCCTCAAGTTGGCACGGTTGCTTATCCGGCCAGTGCTTTGGTGC
ATGCGTGTGCGGATCCCGTGGTATTGATTGCGTCCAATGATGCATTGGGC
ATTGATTTGGCGGGGGACCATGATATCGAGGCGATGGTGTTGGTGGATAG
GGGTGATCGGTTCTTCCAAGCCACCAAGTTTTATGCTTTCGGCGCGCCTG
ATGGGTCGGTGGTCATTCGTTGGTTTGATAAGATTCCGGAGGGCTGGGCG
TTATTGGGGAAGGTCCATTATATTACCCTTCCCTGGACGGAGAAAACAGG
GAAGTTTAAGAGTGGATGGATGGAGGTTGATGAGGACGATTAAGTAAGGG
AGATGGCAGCTGGTGGCCTGGGGCAATGGTTTGTGTTTTGGTGGAGGATG
AAAGTAAGCACAAATAGTGACAAAGGAAAATAATAATTCAATAATACACC
GAAAGAGCAACAGGTCCGACATGCATAGAGTAGAAAAAAAGAGAACTCTT
CTC
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protein sequence of jgi.p|Nanoce1779_2|583909

>mRNA_2943-protein ID=mRNA_2943-protein|Name=jgi.p|Nanoce1779_2|583909|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MSTQNGFVLAFLVAVALNQATAFFLPASTPILTMRSRSEAPGQEQQGIQR
TERTRGLASAQLQEGMHGTGSRFLSIQQLKGDELMPRIIPIAGVYPGITV
QEFMAPASTPSPSYGRWAYDFSDPEGPQVGTVAYPASALVHACADPVVLI
ASNDALGIDLAGDHDIEAMVLVDRGDRFFQATKFYAFGAPDGSVVIRWFD
KIPEGWALLGKVHYITLPWTEKTGKFKSGWMEVDEDD*
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mRNA from alignment at scaffold_7:313941..315087+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2943 ID=mRNA_2943|Name=jgi.p|Nanoce1779_2|583909|organism=Nannochloropsis oceanica|type=mRNA|length=1147bp|location=Sequence derived from alignment at scaffold_7:313941..315087+ (Nannochloropsis oceanica)
ACAGGCTGCCGGACCTCATATCCGCTACCATGTCCACACAAAATGGGTTC
GTCCTTGCCTTCCTAGTTGCTGTTGCCCTCAACCAGGCCACCGCCTTTTT
CCTGCCCGCCTCTACCCCCATCCTCACCATGCGCTCAAGATCAGAAGCAC
CAGGACAAGAGCAACAAGGGATACAAAGAACAGAACGAACACGCGGGCTG
GCTTCCGCACAACTGCAGGTACGTCAAGACCCGCATCAAACACATGCCCT
TCCCAGCCGCACGCTCTAGTGCTTTCTAGAAATGACCAGTCGGGGTGGCC
TATTTCTTGGCTTGGATCTTCCTCCATAGGCTCTATATCAAGAGTATACA
GTTTTTTTTGTCAAAATTGGCTTCGTCGTTTGATTTCTCTCCAATAACCC
TACCCGCCCAATCAACCCCACTCACCCCTCCTCTTCTACCCTTCCTTTAA
CCCCAACCACAGGAGGGCATGCACGGGACCGGCTCCCGCTTCCTCTCAAT
CCAACAACTCAAAGGCGACGAGCTTATGCCACGTATCATCCCTATCGCTG
GTGTCTACCCTGGTATCACCGTGCAAGAATTTATGGCACCCGCCTCAACT
CCCTCCCCTTCCTATGGCCGTTGGGCTTATGATTTTTCTGACCCTGAGGG
GCCTCAAGTTGGCACGGTTGCTTATCCGGCCAGTGCTTTGGTGCATGCGT
GTGCGGATCCCGTGGTATTGATTGCGTCCAATGATGCATTGGGCATTGAT
TTGGCGGGGGACCATGATATCGAGGCGATGGTGTTGGTGGATAGGGGTGA
TCGGTTCTTCCAAGCCACCAAGTTTTATGCTTTCGGCGCGCCTGATGGGT
CGGTGGTCATTCGTTGGTTTGATAAGATTCCGGAGGGCTGGGCGTTATTG
GGGAAGGTCCATTATATTACCCTTCCCTGGACGGAGAAAACAGGGAAGTT
TAAGAGTGGATGGATGGAGGTTGATGAGGACGATTAAGTAAGGGAGATGG
CAGCTGGTGGCCTGGGGCAATGGTTTGTGTTTTGGTGGAGGATGAAAGTA
AGCACAAATAGTGACAAAGGAAAATAATAATTCAATAATACACCGAAAGA
GCAACAGGTCCGACATGCATAGAGTAGAAAAAAAGAGAACTCTTCTC
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Coding sequence (CDS) from alignment at scaffold_7:313941..315087+

>mRNA_2943 ID=mRNA_2943|Name=jgi.p|Nanoce1779_2|583909|organism=Nannochloropsis oceanica|type=CDS|length=1428bp|location=Sequence derived from alignment at scaffold_7:313941..315087+ (Nannochloropsis oceanica)
ATGTCCACACAAAATGGGTTCGTCCTTGCCTTCCTAGTTGCTGTTGCCCT
CAACCAGGCCACCGCCTTTTTCCTGCCCGCCTCTACCCCCATCCTCACCA
TGCGCTCAAGATCAGAAGCACCAGGACAAGAGCAACAAGGGATACAAAGA
ACAGAACGAACACGCGGGCTGGCTTCCGCACAACTGCAGGAGGGCATGCA
CGGGACCGGCTCCCGCTTCCTCTCAATCCAACAACTCAAAGGCGACGAGC
TTATGCCACGTATCATCCCTATCGCTGGTGTCTACCCTGGTATCACCGTG
CAAGAATTTATGGCACCCGCCTCAACTCCCTCCCCTTCCTATGGCCGTTG
GGCTTATGATTTTTCTGACCCTGAGGGGCCTCAAGTTGGCACGGTTGCTT
ATCCGGCCAGTGCTTTGGTGCATGCGTGTGCGGATCCCGTGGTATTGATT
GCGTCCAATGATGCATTGGGCATTGATTTGGCGGGGGACCATGATATCGA
GGCGATGGTGTTGGTGGATAGGGGTGATCGGTTCTTCCAAGCCACCAAGT
TTTATGCTTTCGGCGCGCCTGATGGGTCGGTGGTCATTCGTTGGTTTGAT
AAGATTCCGGAGGGCTGGGCGTTATTGGGGAAGGTCCATTATATTACCCT
TCCCTGGACGGAGAAAACAGGGAAGTTTAAGAGTGGATGGATGGAGGTTG
ATGAGGACGATTAAATGTCCACACAAAATGGGTTCGTCCTTGCCTTCCTA
GTTGCTGTTGCCCTCAACCAGGCCACCGCCTTTTTCCTGCCCGCCTCTAC
CCCCATCCTCACCATGCGCTCAAGATCAGAAGCACCAGGACAAGAGCAAC
AAGGGATACAAAGAACAGAACGAACACGCGGGCTGGCTTCCGCACAACTG
CAGGAGGGCATGCACGGGACCGGCTCCCGCTTCCTCTCAATCCAACAACT
CAAAGGCGACGAGCTTATGCCACGTATCATCCCTATCGCTGGTGTCTACC
CTGGTATCACCGTGCAAGAATTTATGGCACCCGCCTCAACTCCCTCCCCT
TCCTATGGCCGTTGGGCTTATGATTTTTCTGACCCTGAGGGGCCTCAAGT
TGGCACGGTTGCTTATCCGGCCAGTGCTTTGGTGCATGCGTGTGCGGATC
CCGTGGTATTGATTGCGTCCAATGATGCATTGGGCATTGATTTGGCGGGG
GACCATGATATCGAGGCGATGGTGTTGGTGGATAGGGGTGATCGGTTCTT
CCAAGCCACCAAGTTTTATGCTTTCGGCGCGCCTGATGGGTCGGTGGTCA
TTCGTTGGTTTGATAAGATTCCGGAGGGCTGGGCGTTATTGGGGAAGGTC
CATTATATTACCCTTCCCTGGACGGAGAAAACAGGGAAGTTTAAGAGTGG
ATGGATGGAGGTTGATGAGGACGATTAA
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Synonyms
Publications