jgi.p|Nanoce1779_2|583900, mRNA_2941 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|583900
Unique Name	mRNA_2941
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1857
Alignment location	scaffold_7:308793..310649 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	583986
Track	FilteredModels2
ProteinId	583900

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:308793..310649 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583900	gene_2941	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583900	mRNA_2941-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2941	CDS_2941	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:308793..310649+
coding sequence from alignment at scaffold_7:308793..310649+

mRNA sequence

>mRNA_2941 ID=mRNA_2941|Name=jgi.p|Nanoce1779_2|583900|organism=Nannochloropsis oceanica|type=mRNA|length=1857bp
GCTCAGGCTCAAGCGTTGCCGCGCATTTGAAATGTCGCGCAATTTATGAC
GTCGCTGCCTGCTGCCTGCGAGCATTCAGCGCACCATTTGTCGTCGGAAG
AGCGCGGGCTACACGCATCAATAATGACGAAAGCCCACATACACAGGTCG
TAAAATCAAATCCATCGGATGCCGCCAACATGGGCCTCCTGACTCTGCCC
CTCCCGCCATCCCTCATCCATCTCCCTTTACACCACAATCATCAATAATG
CATGTCGCCTCTACCCCGAAAACCATCCATGACCTCGATGCCCTGGGAGC
TCAAGTCGATCTGTCGCTTCTGTATGTCGATGACCACCTAATTGTTGTCA
ACAAGCAGGTTGGGCTCAGTACCATTCCTGGCAATACGTTGGTCAAGGGA
GAGGGCACGGACGAGGCTTCTTCGATAGAAGTGAAACCGCCAGTACCATT
GGAAAGTAGCACTGCAGACGCGGTCATGCTTCCATCTTTGTTAGCTCTCG
ATGAAGACCTAAAGCAATATTCCGCTGTATCGGCGCAACCAGCTCTCGCT
CAAGGCAATGACACCACATCGTCATCGCCTCCCCTAGCGGCACCTCCATT
CCCTGCCACCTCACCAAGCTCCCCCTCCCCACCACGACCAAACAACAAAC
GTAAACGCACTCATCAAGAGCTCTGGATGGACATGCTCACCGAAGACCCA
GTCACTCTACAACATACCCTCAACCTGTCCGCCGACCCATATCTCGCACG
CACCCTTGCAAGCCTGCTCGCGCACAAATCCTCCGTCCCTCGCAAACGTC
ACATTTTTGTCGAATGGGGCGTGCGTATTCTCAAAGCCCCCTCAGACGTC
ATGGAAACGATATACGAGCGGCTACTCAAGGCATTCGAAGCCAAAGAGGG
AAATCGTCAAGACTCGGTACAAACCCGGTTACTCCGTGTCTTTCAACAAG
TCAAAACAGTGCACCGCCTAGACTGCGAAACCTCGGGAGCCTTAGTCCTG
GCCCGGACAATGCAAGCCGCCCGAAGCCTAAGCGCGCAATTCCGTGAAAA
AAAGGTGGGCAAACGATACGTGGCTTTGGTGAAGGGATGTCCGCTCTGGC
CTCAGCCAAGAGGCGAGGTGTGTTTGCCTATTCGTTCCGATCGCGAAACA
CGCCCGAAGCAAGTCATGGACCCGGAAAGGGGGAAAGAATCAAAAACCCT
CTTTCGAACCGTATGTGTTGGTACTGCTGCTGGTTGTGATGGTACTGTCG
AAAGGATCACTCGTGTGGAGCTGACGCCTCTGACGGGAAGGACGCATCAG
TTGAGGGTGCATATGGCAGCGCTGGGGCACCCTATTTTGGGGGACAGCAT
TTATTCGATGGGTGATAAATGGACGAAGAGTGACATGAGAGCTTTTGTGA
AACCCTATTTGACTGAGGATGATCGGTTGGAGGAAGAGGATGTGGAGGGA
CGGAAGGAGGAAGGCATGAAGGAAGGGTGTGTGTTGGAGGTGAAGGAGCG
TACGTTGGAGACGAGGGGGGCACGCCTGCATTTGCACGCTGAGATTTTGA
GTTTTCACCATCCCATTTCCGGGGAACGGATTCGATTCGAGGCTCGAGCA
CCGTTTTGAGAGATCGAAACGGCACAGGAAAAAAAATAGCTTACACGCTT
GCCCGGATCTGTATTGAATTGAAGATAACATAAAGCCAGGTTGATAGTTG
GGATCCTGTACTGGTGCATATTCTTCCTTTTTTGCATCATCAATAAGTGC
TATACAAGGTTCTTATAGCGTACTTTGTTTTACCAAAACACCAGCGGCGG
GACTTTGCCCAGATGCCGTGGCGCAGCCCTCCCAGCCCGGCGCCACCCCT
CCCGCCG

protein sequence of jgi.p|Nanoce1779_2|583900

>mRNA_2941-protein ID=mRNA_2941-protein|Name=jgi.p|Nanoce1779_2|583900|organism=Nannochloropsis oceanica|type=polypeptide|length=454bp
MHVASTPKTIHDLDALGAQVDLSLLYVDDHLIVVNKQVGLSTIPGNTLVK
GEGTDEASSIEVKPPVPLESSTADAVMLPSLLALDEDLKQYSAVSAQPAL
AQGNDTTSSSPPLAAPPFPATSPSSPSPPRPNNKRKRTHQELWMDMLTED
PVTLQHTLNLSADPYLARTLASLLAHKSSVPRKRHIFVEWGVRILKAPSD
VMETIYERLLKAFEAKEGNRQDSVQTRLLRVFQQVKTVHRLDCETSGALV
LARTMQAARSLSAQFREKKVGKRYVALVKGCPLWPQPRGEVCLPIRSDRE
TRPKQVMDPERGKESKTLFRTVCVGTAAGCDGTVERITRVELTPLTGRTH
QLRVHMAALGHPILGDSIYSMGDKWTKSDMRAFVKPYLTEDDRLEEEDVE
GRKEEGMKEGCVLEVKERTLETRGARLHLHAEILSFHHPISGERIRFEAR
APF*

mRNA from alignment at scaffold_7:308793..310649+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2941 ID=mRNA_2941|Name=jgi.p|Nanoce1779_2|583900|organism=Nannochloropsis oceanica|type=mRNA|length=1857bp|location=Sequence derived from alignment at scaffold_7:308793..310649+ (Nannochloropsis oceanica)
GCTCAGGCTCAAGCGTTGCCGCGCATTTGAAATGTCGCGCAATTTATGAC
GTCGCTGCCTGCTGCCTGCGAGCATTCAGCGCACCATTTGTCGTCGGAAG
AGCGCGGGCTACACGCATCAATAATGACGAAAGCCCACATACACAGGTCG
TAAAATCAAATCCATCGGATGCCGCCAACATGGGCCTCCTGACTCTGCCC
CTCCCGCCATCCCTCATCCATCTCCCTTTACACCACAATCATCAATAATG
CATGTCGCCTCTACCCCGAAAACCATCCATGACCTCGATGCCCTGGGAGC
TCAAGTCGATCTGTCGCTTCTGTATGTCGATGACCACCTAATTGTTGTCA
ACAAGCAGGTTGGGCTCAGTACCATTCCTGGCAATACGTTGGTCAAGGGA
GAGGGCACGGACGAGGCTTCTTCGATAGAAGTGAAACCGCCAGTACCATT
GGAAAGTAGCACTGCAGACGCGGTCATGCTTCCATCTTTGTTAGCTCTCG
ATGAAGACCTAAAGCAATATTCCGCTGTATCGGCGCAACCAGCTCTCGCT
CAAGGCAATGACACCACATCGTCATCGCCTCCCCTAGCGGCACCTCCATT
CCCTGCCACCTCACCAAGCTCCCCCTCCCCACCACGACCAAACAACAAAC
GTAAACGCACTCATCAAGAGCTCTGGATGGACATGCTCACCGAAGACCCA
GTCACTCTACAACATACCCTCAACCTGTCCGCCGACCCATATCTCGCACG
CACCCTTGCAAGCCTGCTCGCGCACAAATCCTCCGTCCCTCGCAAACGTC
ACATTTTTGTCGAATGGGGCGTGCGTATTCTCAAAGCCCCCTCAGACGTC
ATGGAAACGATATACGAGCGGCTACTCAAGGCATTCGAAGCCAAAGAGGG
AAATCGTCAAGACTCGGTACAAACCCGGTTACTCCGTGTCTTTCAACAAG
TCAAAACAGTGCACCGCCTAGACTGCGAAACCTCGGGAGCCTTAGTCCTG
GCCCGGACAATGCAAGCCGCCCGAAGCCTAAGCGCGCAATTCCGTGAAAA
AAAGGTGGGCAAACGATACGTGGCTTTGGTGAAGGGATGTCCGCTCTGGC
CTCAGCCAAGAGGCGAGGTGTGTTTGCCTATTCGTTCCGATCGCGAAACA
CGCCCGAAGCAAGTCATGGACCCGGAAAGGGGGAAAGAATCAAAAACCCT
CTTTCGAACCGTATGTGTTGGTACTGCTGCTGGTTGTGATGGTACTGTCG
AAAGGATCACTCGTGTGGAGCTGACGCCTCTGACGGGAAGGACGCATCAG
TTGAGGGTGCATATGGCAGCGCTGGGGCACCCTATTTTGGGGGACAGCAT
TTATTCGATGGGTGATAAATGGACGAAGAGTGACATGAGAGCTTTTGTGA
AACCCTATTTGACTGAGGATGATCGGTTGGAGGAAGAGGATGTGGAGGGA
CGGAAGGAGGAAGGCATGAAGGAAGGGTGTGTGTTGGAGGTGAAGGAGCG
TACGTTGGAGACGAGGGGGGCACGCCTGCATTTGCACGCTGAGATTTTGA
GTTTTCACCATCCCATTTCCGGGGAACGGATTCGATTCGAGGCTCGAGCA
CCGTTTTGAGAGATCGAAACGGCACAGGAAAAAAAATAGCTTACACGCTT
GCCCGGATCTGTATTGAATTGAAGATAACATAAAGCCAGGTTGATAGTTG
GGATCCTGTACTGGTGCATATTCTTCCTTTTTTGCATCATCAATAAGTGC
TATACAAGGTTCTTATAGCGTACTTTGTTTTACCAAAACACCAGCGGCGG
GACTTTGCCCAGATGCCGTGGCGCAGCCCTCCCAGCCCGGCGCCACCCCT
CCCGCCG

Coding sequence (CDS) from alignment at scaffold_7:308793..310649+

>mRNA_2941 ID=mRNA_2941|Name=jgi.p|Nanoce1779_2|583900|organism=Nannochloropsis oceanica|type=CDS|length=1362bp|location=Sequence derived from alignment at scaffold_7:308793..310649+ (Nannochloropsis oceanica)
ATGCATGTCGCCTCTACCCCGAAAACCATCCATGACCTCGATGCCCTGGG
AGCTCAAGTCGATCTGTCGCTTCTGTATGTCGATGACCACCTAATTGTTG
TCAACAAGCAGGTTGGGCTCAGTACCATTCCTGGCAATACGTTGGTCAAG
GGAGAGGGCACGGACGAGGCTTCTTCGATAGAAGTGAAACCGCCAGTACC
ATTGGAAAGTAGCACTGCAGACGCGGTCATGCTTCCATCTTTGTTAGCTC
TCGATGAAGACCTAAAGCAATATTCCGCTGTATCGGCGCAACCAGCTCTC
GCTCAAGGCAATGACACCACATCGTCATCGCCTCCCCTAGCGGCACCTCC
ATTCCCTGCCACCTCACCAAGCTCCCCCTCCCCACCACGACCAAACAACA
AACGTAAACGCACTCATCAAGAGCTCTGGATGGACATGCTCACCGAAGAC
CCAGTCACTCTACAACATACCCTCAACCTGTCCGCCGACCCATATCTCGC
ACGCACCCTTGCAAGCCTGCTCGCGCACAAATCCTCCGTCCCTCGCAAAC
GTCACATTTTTGTCGAATGGGGCGTGCGTATTCTCAAAGCCCCCTCAGAC
GTCATGGAAACGATATACGAGCGGCTACTCAAGGCATTCGAAGCCAAAGA
GGGAAATCGTCAAGACTCGGTACAAACCCGGTTACTCCGTGTCTTTCAAC
AAGTCAAAACAGTGCACCGCCTAGACTGCGAAACCTCGGGAGCCTTAGTC
CTGGCCCGGACAATGCAAGCCGCCCGAAGCCTAAGCGCGCAATTCCGTGA
AAAAAAGGTGGGCAAACGATACGTGGCTTTGGTGAAGGGATGTCCGCTCT
GGCCTCAGCCAAGAGGCGAGGTGTGTTTGCCTATTCGTTCCGATCGCGAA
ACACGCCCGAAGCAAGTCATGGACCCGGAAAGGGGGAAAGAATCAAAAAC
CCTCTTTCGAACCGTATGTGTTGGTACTGCTGCTGGTTGTGATGGTACTG
TCGAAAGGATCACTCGTGTGGAGCTGACGCCTCTGACGGGAAGGACGCAT
CAGTTGAGGGTGCATATGGCAGCGCTGGGGCACCCTATTTTGGGGGACAG
CATTTATTCGATGGGTGATAAATGGACGAAGAGTGACATGAGAGCTTTTG
TGAAACCCTATTTGACTGAGGATGATCGGTTGGAGGAAGAGGATGTGGAG
GGACGGAAGGAGGAAGGCATGAAGGAAGGGTGTGTGTTGGAGGTGAAGGA
GCGTACGTTGGAGACGAGGGGGGCACGCCTGCATTTGCACGCTGAGATTT
TGAGTTTTCACCATCCCATTTCCGGGGAACGGATTCGATTCGAGGCTCGA
GCACCGTTTTGA

Synonyms

Publications