jgi.p|Nanoce1779_2|583897, mRNA_2940 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583897
Unique NamemRNA_2940
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length748
Alignment locationscaffold_7:307555..308593 +

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Properties
Property NameValue
TranscriptId583983
TrackFilteredModels2
ProteinId583897
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:307555..308593 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583897gene_2940Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583897mRNA_2940-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2940CDS_2940Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2940 ID=mRNA_2940|Name=jgi.p|Nanoce1779_2|583897|organism=Nannochloropsis oceanica|type=mRNA|length=748bp
CCCCCTCCCCGATATTGCCCCTGCTGCTGCTGCTGCTGCTGCTGCTGTAT
GGACCACCCTCTCCTTTCCCCTCCTCCGAGAGCAATCATGCTTGTGGTGG
TGCCCCTCATTCCGCTGGTGCCTGCATGCCTGACCTGCCCCTCTATGGCC
AATGGCCCCTGCATCGAGCTTATGCTGCTGACAATATTCGATTTATGCCT
CGTATTTGCGTCGCCCACCAAAACGGATAAACGGAACACGTACACTTCCT
TTGCATCCTCTGCATGCGGGGTTAGCCGCAGCTGCAAGAGAGCTATACGT
GCCTCAGGGAGGTCAGCAGCGCTGAATTTGTAGTGGTATTTGAAGGGATG
GTCGACCGCGGGACGACCCTTGAGGCCCCCGATATGGACATACTCGCCCG
ATGCGCCTCGTCCGCCTTTGAGCACGTAGAGCTCAACGGCTTTGGCCGAG
ACGACCATTTCGAGATAGGAGACACAGGATTCGTTTTCCATGGTTACGTG
GAGGAAACAGCCCCGAGGGCCTGCCTGCAAGGGGCGAGCAAGCTTGACCT
CGTTTAGGGAGTGGACCTGGCCAAGCTCGAACTTGTTACCCCCGTTGAAC
TGCGTGATCCCATCCCAGTTGGAACGCACGTACGGCATGCTTGATTCCTA
TGGGTGGGCTGAAAGGATGGAAGGCAGAGCGTGTCTTTCGATGTTCCGTG
CAAGCAGAACTGGGCCGAGGTAAAGGGGGGGTGGGTTTGACGTGCTGT
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protein sequence of jgi.p|Nanoce1779_2|583897

>mRNA_2940-protein ID=mRNA_2940-protein|Name=jgi.p|Nanoce1779_2|583897|organism=Nannochloropsis oceanica|type=polypeptide|length=95bp
MDHPLLSPPPRAIMLVVVPLIPLVPACLTCPSMANGPCIELMLLTIFDLC
LVFASPTKTDKRNTYTSFASSACGVSRSCKRAIRASGRSAALNL*
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mRNA from alignment at scaffold_7:307555..308593+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2940 ID=mRNA_2940|Name=jgi.p|Nanoce1779_2|583897|organism=Nannochloropsis oceanica|type=mRNA|length=1039bp|location=Sequence derived from alignment at scaffold_7:307555..308593+ (Nannochloropsis oceanica)
CCCCCTCCCCGATATTGCCCCTGCTGCTGCTGCTGCTGCTGCTGCTGTAT
GGACCACCCTCTCCTTTCCCCTCCTCCGAGAGCAATCATGCTTGTGGTGG
TGCCCCTCATTCCGCTGGTGCCTGCATGCCTGACCTGCCCCTCTATGGCC
AATGGCCCCTGCATCGAGCTTATGCTGCTGACAATATTCGATTTATGCCT
CGTATTTGCGTCGCCCACCAAAACGGATAAACGGAACACGTACACTTCCT
TTGCATCCTCTGCATGCGGGGTTAGCCGCAGCTGCAAGAGAGCTATACGT
GCCTCAGGGAGGTCAGCAGCGCTGAATTTGTAGTGGTATTTGAAGGGATG
GTCGACCGCGGGACGACCCTTGAGGCCCCCGATATGGACATACTCGCCCG
ATGCGCCTCGTCCGCCTTTGAGCACGTAGAGCTCAACGGCTTTGGCCGAG
ACGACCATTTCGAGATAGGAGACACAGGATTCGTTTTCCATGGTTACTGA
GTTTTGGTGGAAGGGTGGTAGGTGATTGGCGGTGAGTTGAAGGGAAGAGA
GCATGGAGTCTTGCCTCGGGGAGTGGATGCATGAAATTAAAATGGGAACA
GGAACCTCCGAATCTGTCTGGAGTTTTTTGAGGTTTGGCTCGTATGAGGG
TAAGGGGCCGGCATGCACAGAGCTGCCTTCAAGCTCCTCGACACCTACTT
TCGTAAACTATCCACGCATTTTCATTGCCACATGCCTCCTACCCCTTCCT
TGATATACACACTTCCAATGCCACTCAAATTACGTACCGTGGAGGAAACA
GCCCCGAGGGCCTGCCTGCAAGGGGCGAGCAAGCTTGACCTCGTTTAGGG
AGTGGACCTGGCCAAGCTCGAACTTGTTACCCCCGTTGAACTGCGTGATC
CCATCCCAGTTGGAACGCACGTACGGCATGCTTGATTCCTATGGGTGGGC
TGAAAGGATGGAAGGCAGAGCGTGTCTTTCGATGTTCCGTGCAAGCAGAA
CTGGGCCGAGGTAAAGGGGGGGTGGGTTTGACGTGCTGT
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Coding sequence (CDS) from alignment at scaffold_7:307555..308593+

>mRNA_2940 ID=mRNA_2940|Name=jgi.p|Nanoce1779_2|583897|organism=Nannochloropsis oceanica|type=CDS|length=285bp|location=Sequence derived from alignment at scaffold_7:307555..308593+ (Nannochloropsis oceanica)
ATGGACCACCCTCTCCTTTCCCCTCCTCCGAGAGCAATCATGCTTGTGGT
GGTGCCCCTCATTCCGCTGGTGCCTGCATGCCTGACCTGCCCCTCTATGG
CCAATGGCCCCTGCATCGAGCTTATGCTGCTGACAATATTCGATTTATGC
CTCGTATTTGCGTCGCCCACCAAAACGGATAAACGGAACACGTACACTTC
CTTTGCATCCTCTGCATGCGGGGTTAGCCGCAGCTGCAAGAGAGCTATAC
GTGCCTCAGGGAGGTCAGCAGCGCTGAATTTGTAG
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Synonyms
Publications