jgi.p|Nanoce1779_2|576843, mRNA_294 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576843
Unique Name	mRNA_294
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2025
Alignment location	scaffold_3:726621..728909 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576929
Track	FilteredModels2
ProteinId	576843

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:726621..728909 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576843	gene_294	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576843	mRNA_294-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_294	CDS_294	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:726621..728909+
coding sequence from alignment at scaffold_3:726621..728909+

mRNA sequence

>mRNA_294 ID=mRNA_294|Name=jgi.p|Nanoce1779_2|576843|organism=Nannochloropsis oceanica|type=mRNA|length=2025bp
AACAACAGTCGAACTAGGACACAAGGGCAGCCAGCTAAGCCAGAGGAACG
TGGGGAGGCGAGCGCTTTCCTGTGTGGAAGGATGGCAGGCCTCGTTCGAT
ACCTGGGACTGGCCCTTGCCCTAGTGCTGCTTATGCTGCTGAATGATGCC
AAGAAGGTGGGGACATCGCGCAGTAGTGGTTTGTCGGGGCGGGCCAAGTC
AGCGGCCAAAGCCAGCAGCAAGAAAGTGAGCAAGTCGCCTGTGTCGTCGA
CAGGTGCCCGGAGAAGGCAACCACCAGTGGAGATCTATCGAGAAGAAGAC
GAAGAGGAGGCGGATGACGAGGATGAGGAGGAGGACGTGATGCCTCCCTC
TTCGTCCCGCCGAAGCGGTGGCGGCCGGGCGGCCCCAGATTTTGGCAGGC
GCGCGATGCGCGCAGGTTCAAAGTCCCGGCATAGCTACGTGGAGGAAGAG
GAGGAAGACTACGACGAGGAGGAAGATGAGGACGAGGACTATTTTGACGA
TGAGGAGGAGGACGAGGAGGATGGGGAGGAGGAGGATTTGCGGGACCGCC
GCCGTTATGGAATCAAGCCAGGAGGTGTAAAGAAACGCCGTGGTGCCCCG
CCTCCACCACCTTCAAAGAAGGGCAAGGGCAGCAGCAGCAGCCGAAGTAG
AAAGAGCTCGCGGGGAGGGCGGTATGCAGGAGAGAGAGGCAGGAAGGGAG
GGAAAGCGTTGACGTACAAGCCCGCCGGGTACGGGGTGGCCCGGGAGCCG
CTCCAAGCGCGTGTAATGCGCAATGTTTTCTTCCTGACTGAGAAGGTACA
GGGTATGGCGACGAAGGGGAAGAAATTGACAAGAGAAATGAAGGAGTATT
TTAGTGGGGATTTTGAGAGCATGCTCTTAAAGGCTACCAGGCCTGATGAT
GCCCGACCTCCCCCTGAATTCATCGGTGCGATCCTAGATGCAACTGGCAC
CTTTCATCGAGACGAGGATGTGACGAGTAATAGCAATCCATACCGTGTTA
CACTCCGGAAGATCTGGGCGAAGATGGCGGAAAATGATTGGAGGACTGTC
GCCAAGGCCCTTTACTTGTTTCATGTCTTGCTCCGGGAGTGCGAGCCTGA
CGATGTGCGGATCTATAAGAAAGTTTACGCAAAAATGTGTCGGGAAGGGT
GTAAGAAGACCAAATGTCGTTATTTTGACGTGGCGGCGATAAATGCTGTG
GATGTTTTGGAGGGAGTAGCAGGAGCAGAAGCTGCGTTGGATCGACGGGC
GTTTATTTCTAGGTATAGCAAATATGTCTTGCAGCGGGCGAAGACATTCA
CGTCGAAATTCGAGGAAATGAAGGTGATTGGCGAGAGGGACATCATTCCT
AAGGATTTGGTCGGGCAGTTGGGGAAGGCGGAAAAGGTATTGGCATCGGG
GTTGGAATGTGCGCTGCTGGAGGGGGAGGAGGAGGCCGACAGCGAGGTGA
CGCTGATGTGTGTGGAGTTGGTCGCAAGGGACGTCTACGATTTATTCAGG
CTCTTTCACGACAAGCTCCGCTGGGCTGTGGATAACGAGGCTTCGGCTTT
CGAAGGCGCAGATAGAGCAGAAGTCCGCAAAGTTCTTGATCGCTTCAAGG
CAAGCTACGCGACACACTACCCGGAAGTTCAGCATTTTCTCTCGAGCACC
GCGCAGCTCTTGGCGTTATATGGGATTAGGCTACGCACGAAACTCGAACC
TGTCCATCGATTTGATGAAGAGGACGAGATAGCTGCTGCGGAGGCGGCTG
CTCAAGCTGCGGTGGCGGCGGGGTTTGAGGAAGAGCGGGAGGGAATGATC
GAAGCTGGGGTGGCAGGTGGGGTGGGAGGGCAGGTCGAGGAAGTGGTTGT
GGTAGAGGAGGACAAGGGAGAAGCAAAATCAAACAGTCGTAGTAAGAGGA
GAGTGATGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAA
GATGATGAGGAAGATGATGAGGATGAGGATGAGGATGAGGAGTAGATAGG
CGACGCATATTAAGATTGAGCCATG

protein sequence of jgi.p|Nanoce1779_2|576843

>mRNA_294-protein ID=mRNA_294-protein|Name=jgi.p|Nanoce1779_2|576843|organism=Nannochloropsis oceanica|type=polypeptide|length=638bp
MAGLVRYLGLALALVLLMLLNDAKKVGTSRSSGLSGRAKSAAKASSKKVS
KSPVSSTGARRRQPPVEIYREEDEEEADDEDEEEDVMPPSSSRRSGGGRA
APDFGRRAMRAGSKSRHSYVEEEEEDYDEEEDEDEDYFDDEEEDEEDGEE
EDLRDRRRYGIKPGGVKKRRGAPPPPPSKKGKGSSSSRSRKSSRGGRYAG
ERGRKGGKALTYKPAGYGVAREPLQARVMRNVFFLTEKVQGMATKGKKLT
REMKEYFSGDFESMLLKATRPDDARPPPEFIGAILDATGTFHRDEDVTSN
SNPYRVTLRKIWAKMAENDWRTVAKALYLFHVLLRECEPDDVRIYKKVYA
KMCREGCKKTKCRYFDVAAINAVDVLEGVAGAEAALDRRAFISRYSKYVL
QRAKTFTSKFEEMKVIGERDIIPKDLVGQLGKAEKVLASGLECALLEGEE
EADSEVTLMCVELVARDVYDLFRLFHDKLRWAVDNEASAFEGADRAEVRK
VLDRFKASYATHYPEVQHFLSSTAQLLALYGIRLRTKLEPVHRFDEEDEI
AAAEAAAQAAVAAGFEEEREGMIEAGVAGGVGGQVEEVVVVEEDKGEAKS
NSRSKRRVMEEEEEEEEEEEEEEDDEEDDEDEDEDEE*

mRNA from alignment at scaffold_3:726621..728909+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_294 ID=mRNA_294|Name=jgi.p|Nanoce1779_2|576843|organism=Nannochloropsis oceanica|type=mRNA|length=2289bp|location=Sequence derived from alignment at scaffold_3:726621..728909+ (Nannochloropsis oceanica)
AACAACAGTCGAACTAGGACACAAGGGCAGCCAGCTAAGCCAGAGGAACG
TGGGGAGGCGAGCGCTTTCCTGTGTGGAAGGATGGCAGGCCTCGTTCGAT
ACCTGGGACTGGCCCTTGCCCTAGTGCTGCTTATGCTGCTGAATGATGCC
AAGAAGGTGGGGACATCGCGCAGTAGTGGTTTGTCGGGGCGGGCCAAGTC
AGCGGCCAAAGCCAGGTACGCAGGAGGGAATAGATGGGGCGGGGTGGTCG
GAATGCGTACGGATACTTAACAATAAGGAGAAGACCAAGCGACCGTGGAG
ATGGCACTCCACCCGCGCTTGCACGTGCGGCAGATAGTGATACGCTTACG
CAAAGGAAGGGTGTGCGGCCCTCCTCTCGTTTTCGTTCGTGAGGTCGGAA
GAGCTTTTTGATGATGATGAGCGGCTTAGACCACCAACCAACGACTTACC
CTCCTTCTTAACACATGTACAATACACAGCAGCAAGAAAGTGAGCAAGTC
GCCTGTGTCGTCGACAGGTGCCCGGAGAAGGCAACCACCAGTGGAGATCT
ATCGAGAAGAAGACGAAGAGGAGGCGGATGACGAGGATGAGGAGGAGGAC
GTGATGCCTCCCTCTTCGTCCCGCCGAAGCGGTGGCGGCCGGGCGGCCCC
AGATTTTGGCAGGCGCGCGATGCGCGCAGGTTCAAAGTCCCGGCATAGCT
ACGTGGAGGAAGAGGAGGAAGACTACGACGAGGAGGAAGATGAGGACGAG
GACTATTTTGACGATGAGGAGGAGGACGAGGAGGATGGGGAGGAGGAGGA
TTTGCGGGACCGCCGCCGTTATGGAATCAAGCCAGGAGGTGTAAAGAAAC
GCCGTGGTGCCCCGCCTCCACCACCTTCAAAGAAGGGCAAGGGCAGCAGC
AGCAGCCGAAGTAGAAAGAGCTCGCGGGGAGGGCGGTATGCAGGAGAGAG
AGGCAGGAAGGGAGGGAAAGCGTTGACGTACAAGCCCGCCGGGTACGGGG
TGGCCCGGGAGCCGCTCCAAGCGCGTGTAATGCGCAATGTTTTCTTCCTG
ACTGAGAAGGTACAGGGTATGGCGACGAAGGGGAAGAAATTGACAAGAGA
AATGAAGGAGTATTTTAGTGGGGATTTTGAGAGCATGCTCTTAAAGGCTA
CCAGGCCTGATGATGCCCGACCTCCCCCTGAATTCATCGGTGCGATCCTA
GATGCAACTGGCACCTTTCATCGAGACGAGGATGTGACGAGTAATAGCAA
TCCATACCGTGTTACACTCCGGAAGATCTGGGCGAAGATGGCGGAAAATG
ATTGGAGGACTGTCGCCAAGGCCCTTTACTTGTTTCATGTCTTGCTCCGG
GAGTGCGAGCCTGACGATGTGCGGATCTATAAGAAAGTTTACGCAAAAAT
GTGTCGGGAAGGGTGTAAGAAGACCAAATGTCGTTATTTTGACGTGGCGG
CGATAAATGCTGTGGATGTTTTGGAGGGAGTAGCAGGAGCAGAAGCTGCG
TTGGATCGACGGGCGTTTATTTCTAGGTATAGCAAATATGTCTTGCAGCG
GGCGAAGACATTCACGTCGAAATTCGAGGAAATGAAGGTGATTGGCGAGA
GGGACATCATTCCTAAGGATTTGGTCGGGCAGTTGGGGAAGGCGGAAAAG
GTATTGGCATCGGGGTTGGAATGTGCGCTGCTGGAGGGGGAGGAGGAGGC
CGACAGCGAGGTGACGCTGATGTGTGTGGAGTTGGTCGCAAGGGACGTCT
ACGATTTATTCAGGCTCTTTCACGACAAGCTCCGCTGGGCTGTGGATAAC
GAGGCTTCGGCTTTCGAAGGCGCAGATAGAGCAGAAGTCCGCAAAGTTCT
TGATCGCTTCAAGGCAAGCTACGCGACACACTACCCGGAAGTTCAGCATT
TTCTCTCGAGCACCGCGCAGCTCTTGGCGTTATATGGGATTAGGCTACGC
ACGAAACTCGAACCTGTCCATCGATTTGATGAAGAGGACGAGATAGCTGC
TGCGGAGGCGGCTGCTCAAGCTGCGGTGGCGGCGGGGTTTGAGGAAGAGC
GGGAGGGAATGATCGAAGCTGGGGTGGCAGGTGGGGTGGGAGGGCAGGTC
GAGGAAGTGGTTGTGGTAGAGGAGGACAAGGGAGAAGCAAAATCAAACAG
TCGTAGTAAGAGGAGAGTGATGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAAGAGGAGGAAGATGATGAGGAAGATGATGAGGATGAGGATGAGGAT
GAGGAGTAGATAGGCGACGCATATTAAGATTGAGCCATG

Coding sequence (CDS) from alignment at scaffold_3:726621..728909+

>mRNA_294 ID=mRNA_294|Name=jgi.p|Nanoce1779_2|576843|organism=Nannochloropsis oceanica|type=CDS|length=3828bp|location=Sequence derived from alignment at scaffold_3:726621..728909+ (Nannochloropsis oceanica)
ATGGCAGGCCTCGTTCGATACCTGGGACTGGCCCTTGCCCTAGTGCTGCT
TATGCTGCTGAATGATGCCAAGAAGGTGGGGACATCGCGCAGTAGTGGTT
TGTCGGGGCGGGCCAAGTCAGCGGCCAAAGCCAGCAGCAAGAAAGTGAGC
AAGTCGCCTGTGTCGTCGACAGGTGCCCGGAGAAGGCAACCACCAGTGGA
GATCTATCGAGAAGAAGACGAAGAGGAGGCGGATGACGAGGATGAGGAGG
AGGACGTGATGCCTCCCTCTTCGTCCCGCCGAAGCGGTGGCGGCCGGGCG
GCCCCAGATTTTGGCAGGCGCGCGATGCGCGCAGGTTCAAAGTCCCGGCA
TAGCTACGTGGAGGAAGAGGAGGAAGACTACGACGAGGAGGAAGATGAGG
ACGAGGACTATTTTGACGATGAGGAGGAGGACGAGGAGGATGGGGAGGAG
GAGGATTTGCGGGACCGCCGCCGTTATGGAATCAAGCCAGGAGGTGTAAA
GAAACGCCGTGGTGCCCCGCCTCCACCACCTTCAAAGAAGGGCAAGGGCA
GCAGCAGCAGCCGAAGTAGAAAGAGCTCGCGGGGAGGGCGGTATGCAGGA
GAGAGAGGCAGGAAGGGAGGGAAAGCGTTGACGTACAAGCCCGCCGGGTA
CGGGGTGGCCCGGGAGCCGCTCCAAGCGCGTGTAATGCGCAATGTTTTCT
TCCTGACTGAGAAGGTACAGGGTATGGCGACGAAGGGGAAGAAATTGACA
AGAGAAATGAAGGAGTATTTTAGTGGGGATTTTGAGAGCATGCTCTTAAA
GGCTACCAGGCCTGATGATGCCCGACCTCCCCCTGAATTCATCGGTGCGA
TCCTAGATGCAACTGGCACCTTTCATCGAGACGAGGATGTGACGAGTAAT
AGCAATCCATACCGTGTTACACTCCGGAAGATCTGGGCGAAGATGGCGGA
AAATGATTGGAGGACTGTCGCCAAGGCCCTTTACTTGTTTCATGTCTTGC
TCCGGGAGTGCGAGCCTGACGATGTGCGGATCTATAAGAAAGTTTACGCA
AAAATGTGTCGGGAAGGGTGTAAGAAGACCAAATGTCGTTATTTTGACGT
GGCGGCGATAAATGCTGTGGATGTTTTGGAGGGAGTAGCAGGAGCAGAAG
CTGCGTTGGATCGACGGGCGTTTATTTCTAGGTATAGCAAATATGTCTTG
CAGCGGGCGAAGACATTCACGTCGAAATTCGAGGAAATGAAGGTGATTGG
CGAGAGGGACATCATTCCTAAGGATTTGGTCGGGCAGTTGGGGAAGGCGG
AAAAGGTATTGGCATCGGGGTTGGAATGTGCGCTGCTGGAGGGGGAGGAG
GAGGCCGACAGCGAGGTGACGCTGATGTGTGTGGAGTTGGTCGCAAGGGA
CGTCTACGATTTATTCAGGCTCTTTCACGACAAGCTCCGCTGGGCTGTGG
ATAACGAGGCTTCGGCTTTCGAAGGCGCAGATAGAGCAGAAGTCCGCAAA
GTTCTTGATCGCTTCAAGGCAAGCTACGCGACACACTACCCGGAAGTTCA
GCATTTTCTCTCGAGCACCGCGCAGCTCTTGGCGTTATATGGGATTAGGC
TACGCACGAAACTCGAACCTGTCCATCGATTTGATGAAGAGGACGAGATA
GCTGCTGCGGAGGCGGCTGCTCAAGCTGCGGTGGCGGCGGGGTTTGAGGA
AGAGCGGGAGGGAATGATCGAAGCTGGGGTGGCAGGTGGGGTGGGAGGGC
AGGTCGAGGAAGTGGTTGTGGTAGAGGAGGACAAGGGAGAAGCAAAATCA
AACAGTCGTAGTAAGAGGAGAGTGATGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAAGAGGAGGAAGATGATGAGGAAGATGATGAGGATGAGGATG
AGGATGAGGAGTAGATGGCAGGCCTCGTTCGATACCTGGGACTGGCCCTT
GCCCTAGTGCTGCTTATGCTGCTGAATGATGCCAAGAAGGTGGGGACATC
GCGCAGTAGTGGTTTGTCGGGGCGGGCCAAGTCAGCGGCCAAAGCCAGCA
GCAAGAAAGTGAGCAAGTCGCCTGTGTCGTCGACAGGTGCCCGGAGAAGG
CAACCACCAGTGGAGATCTATCGAGAAGAAGACGAAGAGGAGGCGGATGA
CGAGGATGAGGAGGAGGACGTGATGCCTCCCTCTTCGTCCCGCCGAAGCG
GTGGCGGCCGGGCGGCCCCAGATTTTGGCAGGCGCGCGATGCGCGCAGGT
TCAAAGTCCCGGCATAGCTACGTGGAGGAAGAGGAGGAAGACTACGACGA
GGAGGAAGATGAGGACGAGGACTATTTTGACGATGAGGAGGAGGACGAGG
AGGATGGGGAGGAGGAGGATTTGCGGGACCGCCGCCGTTATGGAATCAAG
CCAGGAGGTGTAAAGAAACGCCGTGGTGCCCCGCCTCCACCACCTTCAAA
GAAGGGCAAGGGCAGCAGCAGCAGCCGAAGTAGAAAGAGCTCGCGGGGAG
GGCGGTATGCAGGAGAGAGAGGCAGGAAGGGAGGGAAAGCGTTGACGTAC
AAGCCCGCCGGGTACGGGGTGGCCCGGGAGCCGCTCCAAGCGCGTGTAAT
GCGCAATGTTTTCTTCCTGACTGAGAAGGTACAGGGTATGGCGACGAAGG
GGAAGAAATTGACAAGAGAAATGAAGGAGTATTTTAGTGGGGATTTTGAG
AGCATGCTCTTAAAGGCTACCAGGCCTGATGATGCCCGACCTCCCCCTGA
ATTCATCGGTGCGATCCTAGATGCAACTGGCACCTTTCATCGAGACGAGG
ATGTGACGAGTAATAGCAATCCATACCGTGTTACACTCCGGAAGATCTGG
GCGAAGATGGCGGAAAATGATTGGAGGACTGTCGCCAAGGCCCTTTACTT
GTTTCATGTCTTGCTCCGGGAGTGCGAGCCTGACGATGTGCGGATCTATA
AGAAAGTTTACGCAAAAATGTGTCGGGAAGGGTGTAAGAAGACCAAATGT
CGTTATTTTGACGTGGCGGCGATAAATGCTGTGGATGTTTTGGAGGGAGT
AGCAGGAGCAGAAGCTGCGTTGGATCGACGGGCGTTTATTTCTAGGTATA
GCAAATATGTCTTGCAGCGGGCGAAGACATTCACGTCGAAATTCGAGGAA
ATGAAGGTGATTGGCGAGAGGGACATCATTCCTAAGGATTTGGTCGGGCA
GTTGGGGAAGGCGGAAAAGGTATTGGCATCGGGGTTGGAATGTGCGCTGC
TGGAGGGGGAGGAGGAGGCCGACAGCGAGGTGACGCTGATGTGTGTGGAG
TTGGTCGCAAGGGACGTCTACGATTTATTCAGGCTCTTTCACGACAAGCT
CCGCTGGGCTGTGGATAACGAGGCTTCGGCTTTCGAAGGCGCAGATAGAG
CAGAAGTCCGCAAAGTTCTTGATCGCTTCAAGGCAAGCTACGCGACACAC
TACCCGGAAGTTCAGCATTTTCTCTCGAGCACCGCGCAGCTCTTGGCGTT
ATATGGGATTAGGCTACGCACGAAACTCGAACCTGTCCATCGATTTGATG
AAGAGGACGAGATAGCTGCTGCGGAGGCGGCTGCTCAAGCTGCGGTGGCG
GCGGGGTTTGAGGAAGAGCGGGAGGGAATGATCGAAGCTGGGGTGGCAGG
TGGGGTGGGAGGGCAGGTCGAGGAAGTGGTTGTGGTAGAGGAGGACAAGG
GAGAAGCAAAATCAAACAGTCGTAGTAAGAGGAGAGTGATGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAAGATGATGAGGAAGATGA
TGAGGATGAGGATGAGGATGAGGAGTAG

Synonyms

Publications