jgi.p|Nanoce1779_2|669776, mRNA_2939 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|669776
Unique Name	mRNA_2939
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2173
Alignment location	scaffold_7:304375..306763 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	669862
Track	FilteredModels2
ProteinId	669776

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:304375..306763 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|669776	gene_2939	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|669776	mRNA_2939-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2939	CDS_2939	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:304375..306763+
coding sequence from alignment at scaffold_7:304375..306763+

mRNA sequence

>mRNA_2939 ID=mRNA_2939|Name=jgi.p|Nanoce1779_2|669776|organism=Nannochloropsis oceanica|type=mRNA|length=2173bp
AGTCTGCACCGAGGAGGGGTGGGGAGGTCACATCGAGCGGGCCAGGCTTT
TTACCGTTTTTGGGTTCTTATGACACTCATCATGCCCCCTCCAGGTACCG
CACGCATGCACAGGAAGAAGCGGCAGACAAGGAGAAGGGCATAGGCAAGT
CACAAATTTACCCGCTTCGCATTTACAGGAGATTCTCAGCGTCTCAGCTC
CACGCAGCTTCCCCTTCGCTTTGCCCCCTTGCCCCCCATCCCCGGCTCCC
ATTACTATGGCGACTGTCCCCAGCGCCCCCACGCCCACCATTGTTGACCA
GCTGATTAAAAAAGGGGCCATGCTGCACAAGCTCTCCGTGGTGGACGACA
AGAACAACGTCAGCTTGCTGGGCACCTTCCTGGACGACGCCCACGGCCCC
CCAAGCCAGTCGATCCTCAATCACCTTATCTGCCGGAACGAATACGAAAA
AAACTTACCCCTCGTCACCTCTCTCGACTCATTTGCCCTCATCGCCTACT
CAAAAGAAAAAGACTATCGGCGCACCTCTGACTTTGTCGGGTACTTGCAA
GGCCGAAAAAAGGCAGCCAAAGTCTTCGTCGATAAGAGCGGTACTGGAGG
CTACCTCTATCCCGGTCCCTCCCTTACCACTCCCGATGGCATCCCCTGCC
TCCGTTGCTACTACGAGTCAGGCCGTTCCCGCAACATCAACAGCAGCAGC
ACCAACAAGAAACGCCTTGCCCCCCCCTCCATGGACGGACTTCCTGCAGT
TCCCATCCCCACGGGCGCCTCGGTTGCGAAGCGTGCCCGAACGGCGGGCC
ACCCGCGTTTCAAGTACGTGCCACCCACGCCAATGAAAGGACAGATTCCG
CCTCCTTTCTACCACGATCCCGATGCTTGTCCTGTCATCGAAGGACTTAC
CCTCACCCCCGACCAAGCCGCCCTCGCTTCCTCAGCAATGGCGGCAGCAG
CAGCAGTAACACGGCTGCCGCCATCACCTGGTGCAATACCAGGAAGAGGA
GGAGAAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGACGGGGGGGAGCAGC
GTGGGGAAAAGATCAAAAGGTGGCCGAGGGTTTTTATAATCAGTTAAAGC
GTGAGAAGGGCACGAGGAATCAGAGCCTTGTCTTCCACCTCCGCAAGCTC
AACAACTGGGTGAAGGCCCAACTCATCAATTCCTTGAAGCCCGCACCTGT
CAAGAAAGGTAAGGGAGGGGCGGGGAGGGAGCTGGAGGTTTTGGACCTGG
CATGTGGGAAGGGCGGCGATTTCACTAAGTGGAGGGAGGTGAGTCGTCGT
TACCCCATTGCCCGATATGTTGGTGTGGACATCGCAAAGAGTTCGTTGGT
TGACGCCATTGGCAGGTATCATCAAGATAACCATATAAGAGGGGCCCTGG
GGTCAACTTTGACGTTGGCCTGTGCGGACTTGGGAGGGACAGATCTAGTC
GAGGACGAGGTGGAGGTGTGGGAGGCGACGGAGGATAAATGGGACAAGCG
GCCACTGCTGGATGAGGATGACACATTTGATTGCATCACGATGCAGTTTG
CCTTGCATTACATGTTTGAGACGGAGGGGCGGGCGAGAAAGTTTCTGCAG
GTGGTGGCGACGCATTTGAGGAAGGGGGGGAGTTTCATCGCGACTACTGT
TGATGCCAGAGTGGTGGTGGAGATGTTGGTCGGTTTGGGGAGGAGGGAAG
GAGGAAAAGGGGGGGAATGGGTGGCACGATTGGTGGATGAGAAGAAGAGG
GAACTGTGTCGGTTGCAGGTGGATGACGCGACGTATCAGCAGTTATTGAG
GCCGGCGAGAAGAGGAGGTGAAGGAGGGAAGGAGGAAGAAAAGGAAACGC
CCTTTTGTGGGTTAAGGTACAAGTTTTTGTTGAGAGATGGGTCGGAGGAA
AATGGAGCGGCGGATGCTGTCAATGCACCGGAATGGATGATCCCGTTACC
ATTTTTAGAGGCGGCTGCGAAGGAATATGGATTGAAGTTGGAAAAGGCGC
AGAATTTTCATGAGTTGGTGGAGGAGCACAGAGCACATATTGATGGCGGA
CGGGCGGGGATACGTTGGGTGAATTATCAGGGGAGTATAAGTCCGACGGA
GTGGGACATTGCGCGTATTTACGTGGCCTTGAAATTCACGAGGATATGAG
GTGTGGCGTGGGAAGGAAGGGGG

protein sequence of jgi.p|Nanoce1779_2|669776

>mRNA_2939-protein ID=mRNA_2939-protein|Name=jgi.p|Nanoce1779_2|669776|organism=Nannochloropsis oceanica|type=polypeptide|length=631bp
MATVPSAPTPTIVDQLIKKGAMLHKLSVVDDKNNVSLLGTFLDDAHGPPS
QSILNHLICRNEYEKNLPLVTSLDSFALIAYSKEKDYRRTSDFVGYLQGR
KKAAKVFVDKSGTGGYLYPGPSLTTPDGIPCLRCYYESGRSRNINSSSTN
KKRLAPPSMDGLPAVPIPTGASVAKRARTAGHPRFKYVPPTPMKGQIPPP
FYHDPDACPVIEGLTLTPDQAALASSAMAAAAAVTRLPPSPGAIPGRGGE
GGGRGGGGGGRGGAAWGKDQKVAEGFYNQLKREKGTRNQSLVFHLRKLNN
WVKAQLINSLKPAPVKKGKGGAGRELEVLDLACGKGGDFTKWREVSRRYP
IARYVGVDIAKSSLVDAIGRYHQDNHIRGALGSTLTLACADLGGTDLVED
EVEVWEATEDKWDKRPLLDEDDTFDCITMQFALHYMFETEGRARKFLQVV
ATHLRKGGSFIATTVDARVVVEMLVGLGRREGGKGGEWVARLVDEKKREL
CRLQVDDATYQQLLRPARRGGEGGKEEEKETPFCGLRYKFLLRDGSEENG
AADAVNAPEWMIPLPFLEAAAKEYGLKLEKAQNFHELVEEHRAHIDGGRA
GIRWVNYQGSISPTEWDIARIYVALKFTRI*

mRNA from alignment at scaffold_7:304375..306763+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2939 ID=mRNA_2939|Name=jgi.p|Nanoce1779_2|669776|organism=Nannochloropsis oceanica|type=mRNA|length=2389bp|location=Sequence derived from alignment at scaffold_7:304375..306763+ (Nannochloropsis oceanica)
AGTCTGCACCGAGGAGGGGTGGGGAGGTCACATCGAGCGGGCCAGGCTTT
TTACCGTTTTTGGGTTCTTATGACACTCATCATGCCCCCTCCAGGTACCG
CACGCATGCACAGGAAGAAGCGGCAGACAAGGAGAAGGGCATAGGCAAGT
CACAAATTTACCCGCTTCGCATTTACAGGAGATTCTCAGCGTCTCAGCTC
CACGCAGCTTCCCCTTCGCTTTGCCCCCTTGCCCCCCATCCCCGGCTCCC
ATTACTATGGCGACTGTCCCCAGCGCCCCCACGCCCACCATTGTTGACCA
GCTGATTAAAAAAGGGGCCATGCTGCACAAGCTCTCCGTGGTGGACGACA
AGAACAACGTCAGCTTGCTGGGCACCTTCCTGGACGACGCCCACGGCCCC
CCAAGCCAGTCGATCCTCAATCACCTTATCTGCCGGAACGAATACGAAAA
AAACTTACCCCTCGTCACCTCTCTCGACTCATTTGCCCTCATCGCCTACT
CAAAAGAAAAAGACTATCGGCGCACCTCTGACTTTGTCGGGTACTTGCAA
GGCCGAAAAAAGGCAGCCAAAGTCTTCGTCGATAAGAGCGGTACTGGAGG
CTACCTCTATCCCGGTCCCTCCCTTACCACTCCCGATGGCATCCCCTGCC
TCCGTTGCTACTACGAGTCAGGCCGTTCCCGCAACATCAACAGCAGCAGC
ACCAACAAGAAACGCCTTGCCCCCCCCTCCATGGACGGACTTCCTGCAGT
TCCCATCCCCACGGGCGCCTCGGTTGCGAAGCGTGCCCGAACGGCGGGCC
GTATGCCACATTTTGAATATATACCTCCAGACCCCATTTCCCCCTCCAAC
CTACCTCTCTCTTTCCCCTCCTCATCCTCTCCAACAATAAGCGGGGAAGA
AGGTCCTGTATATTTCCTAGGGCGAGAAGGCGAAAATGGCTCCGTCTCCA
CCTCCTTCACCTCCACCAATCTTTTCCCCCCACTACTCGACCCTTCTCAA
TTCCCTTGTAGTCAAGACCCGCGTTTCAAGTACGTGCCACCCACGCCAAT
GAAAGGACAGATTCCGCCTCCTTTCTACCACGATCCCGATGCTTGTCCTG
TCATCGAAGGACTTACCCTCACCCCCGACCAAGCCGCCCTCGCTTCCTCA
GCAATGGCGGCAGCAGCAGCAGTAACACGGCTGCCGCCATCACCTGGTGC
AATACCAGGAAGAGGAGGAGAAGGAGGAGGAAGAGGAGGAGGAGGAGGAG
GACGGGGGGGAGCAGCGTGGGGAAAAGATCAAAAGGTGGCCGAGGGTTTT
TATAATCAGTTAAAGCGTGAGAAGGGCACGAGGAATCAGAGCCTTGTCTT
CCACCTCCGCAAGCTCAACAACTGGGTGAAGGCCCAACTCATCAATTCCT
TGAAGCCCGCACCTGTCAAGAAAGGTAAGGGAGGGGCGGGGAGGGAGCTG
GAGGTTTTGGACCTGGCATGTGGGAAGGGCGGCGATTTCACTAAGTGGAG
GGAGGTGAGTCGTCGTTACCCCATTGCCCGATATGTTGGTGTGGACATCG
CAAAGAGTTCGTTGGTTGACGCCATTGGCAGGTATCATCAAGATAACCAT
ATAAGAGGGGCCCTGGGGTCAACTTTGACGTTGGCCTGTGCGGACTTGGG
AGGGACAGATCTAGTCGAGGACGAGGTGGAGGTGTGGGAGGCGACGGAGG
ATAAATGGGACAAGCGGCCACTGCTGGATGAGGATGACACATTTGATTGC
ATCACGATGCAGTTTGCCTTGCATTACATGTTTGAGACGGAGGGGCGGGC
GAGAAAGTTTCTGCAGGTGGTGGCGACGCATTTGAGGAAGGGGGGGAGTT
TCATCGCGACTACTGTTGATGCCAGAGTGGTGGTGGAGATGTTGGTCGGT
TTGGGGAGGAGGGAAGGAGGAAAAGGGGGGGAATGGGTGGCACGATTGGT
GGATGAGAAGAAGAGGGAACTGTGTCGGTTGCAGGTGGATGACGCGACGT
ATCAGCAGTTATTGAGGCCGGCGAGAAGAGGAGGTGAAGGAGGGAAGGAG
GAAGAAAAGGAAACGCCCTTTTGTGGGTTAAGGTACAAGTTTTTGTTGAG
AGATGGGTCGGAGGAAAATGGAGCGGCGGATGCTGTCAATGCACCGGAAT
GGATGATCCCGTTACCATTTTTAGAGGCGGCTGCGAAGGAATATGGATTG
AAGTTGGAAAAGGCGCAGAATTTTCATGAGTTGGTGGAGGAGCACAGAGC
ACATATTGATGGCGGACGGGCGGGGATACGTTGGGTGAATTATCAGGGGA
GTATAAGTCCGACGGAGTGGGACATTGCGCGTATTTACGTGGCCTTGAAA
TTCACGAGGATATGAGGTGTGGCGTGGGAAGGAAGGGGG

Coding sequence (CDS) from alignment at scaffold_7:304375..306763+

>mRNA_2939 ID=mRNA_2939|Name=jgi.p|Nanoce1779_2|669776|organism=Nannochloropsis oceanica|type=CDS|length=3786bp|location=Sequence derived from alignment at scaffold_7:304375..306763+ (Nannochloropsis oceanica)
ATGGCGACTGTCCCCAGCGCCCCCACGCCCACCATTGTTGACCAGCTGAT
TAAAAAAGGGGCCATGCTGCACAAGCTCTCCGTGGTGGACGACAAGAACA
ACGTCAGCTTGCTGGGCACCTTCCTGGACGACGCCCACGGCCCCCCAAGC
CAGTCGATCCTCAATCACCTTATCTGCCGGAACGAATACGAAAAAAACTT
ACCCCTCGTCACCTCTCTCGACTCATTTGCCCTCATCGCCTACTCAAAAG
AAAAAGACTATCGGCGCACCTCTGACTTTGTCGGGTACTTGCAAGGCCGA
AAAAAGGCAGCCAAAGTCTTCGTCGATAAGAGCGGTACTGGAGGCTACCT
CTATCCCGGTCCCTCCCTTACCACTCCCGATGGCATCCCCTGCCTCCGTT
GCTACTACGAGTCAGGCCGTTCCCGCAACATCAACAGCAGCAGCACCAAC
AAGAAACGCCTTGCCCCCCCCTCCATGGACGGACTTCCTGCAGTTCCCAT
CCCCACGGGCGCCTCGGTTGCGAAGCGTGCCCGAACGGCGGGCCACCCGC
GTTTCAAGTACGTGCCACCCACGCCAATGAAAGGACAGATTCCGCCTCCT
TTCTACCACGATCCCGATGCTTGTCCTGTCATCGAAGGACTTACCCTCAC
CCCCGACCAAGCCGCCCTCGCTTCCTCAGCAATGGCGGCAGCAGCAGCAG
TAACACGGCTGCCGCCATCACCTGGTGCAATACCAGGAAGAGGAGGAGAA
GGAGGAGGAAGAGGAGGAGGAGGAGGAGGACGGGGGGGAGCAGCGTGGGG
AAAAGATCAAAAGGTGGCCGAGGGTTTTTATAATCAGTTAAAGCGTGAGA
AGGGCACGAGGAATCAGAGCCTTGTCTTCCACCTCCGCAAGCTCAACAAC
TGGGTGAAGGCCCAACTCATCAATTCCTTGAAGCCCGCACCTGTCAAGAA
AGGTAAGGGAGGGGCGGGGAGGGAGCTGGAGGTTTTGGACCTGGCATGTG
GGAAGGGCGGCGATTTCACTAAGTGGAGGGAGGTGAGTCGTCGTTACCCC
ATTGCCCGATATGTTGGTGTGGACATCGCAAAGAGTTCGTTGGTTGACGC
CATTGGCAGGTATCATCAAGATAACCATATAAGAGGGGCCCTGGGGTCAA
CTTTGACGTTGGCCTGTGCGGACTTGGGAGGGACAGATCTAGTCGAGGAC
GAGGTGGAGGTGTGGGAGGCGACGGAGGATAAATGGGACAAGCGGCCACT
GCTGGATGAGGATGACACATTTGATTGCATCACGATGCAGTTTGCCTTGC
ATTACATGTTTGAGACGGAGGGGCGGGCGAGAAAGTTTCTGCAGGTGGTG
GCGACGCATTTGAGGAAGGGGGGGAGTTTCATCGCGACTACTGTTGATGC
CAGAGTGGTGGTGGAGATGTTGGTCGGTTTGGGGAGGAGGGAAGGAGGAA
AAGGGGGGGAATGGGTGGCACGATTGGTGGATGAGAAGAAGAGGGAACTG
TGTCGGTTGCAGGTGGATGACGCGACGTATCAGCAGTTATTGAGGCCGGC
GAGAAGAGGAGGTGAAGGAGGGAAGGAGGAAGAAAAGGAAACGCCCTTTT
GTGGGTTAAGGTACAAGTTTTTGTTGAGAGATGGGTCGGAGGAAAATGGA
GCGGCGGATGCTGTCAATGCACCGGAATGGATGATCCCGTTACCATTTTT
AGAGGCGGCTGCGAAGGAATATGGATTGAAGTTGGAAAAGGCGCAGAATT
TTCATGAGTTGGTGGAGGAGCACAGAGCACATATTGATGGCGGACGGGCG
GGGATACGTTGGGTGAATTATCAGGGGAGTATAAGTCCGACGGAGTGGGA
CATTGCGCGTATTTACGTGGCCTTGAAATTCACGAGGATATGAATGGCGA
CTGTCCCCAGCGCCCCCACGCCCACCATTGTTGACCAGCTGATTAAAAAA
GGGGCCATGCTGCACAAGCTCTCCGTGGTGGACGACAAGAACAACGTCAG
CTTGCTGGGCACCTTCCTGGACGACGCCCACGGCCCCCCAAGCCAGTCGA
TCCTCAATCACCTTATCTGCCGGAACGAATACGAAAAAAACTTACCCCTC
GTCACCTCTCTCGACTCATTTGCCCTCATCGCCTACTCAAAAGAAAAAGA
CTATCGGCGCACCTCTGACTTTGTCGGGTACTTGCAAGGCCGAAAAAAGG
CAGCCAAAGTCTTCGTCGATAAGAGCGGTACTGGAGGCTACCTCTATCCC
GGTCCCTCCCTTACCACTCCCGATGGCATCCCCTGCCTCCGTTGCTACTA
CGAGTCAGGCCGTTCCCGCAACATCAACAGCAGCAGCACCAACAAGAAAC
GCCTTGCCCCCCCCTCCATGGACGGACTTCCTGCAGTTCCCATCCCCACG
GGCGCCTCGGTTGCGAAGCGTGCCCGAACGGCGGGCCACCCGCGTTTCAA
GTACGTGCCACCCACGCCAATGAAAGGACAGATTCCGCCTCCTTTCTACC
ACGATCCCGATGCTTGTCCTGTCATCGAAGGACTTACCCTCACCCCCGAC
CAAGCCGCCCTCGCTTCCTCAGCAATGGCGGCAGCAGCAGCAGTAACACG
GCTGCCGCCATCACCTGGTGCAATACCAGGAAGAGGAGGAGAAGGAGGAG
GAAGAGGAGGAGGAGGAGGAGGACGGGGGGGAGCAGCGTGGGGAAAAGAT
CAAAAGGTGGCCGAGGGTTTTTATAATCAGTTAAAGCGTGAGAAGGGCAC
GAGGAATCAGAGCCTTGTCTTCCACCTCCGCAAGCTCAACAACTGGGTGA
AGGCCCAACTCATCAATTCCTTGAAGCCCGCACCTGTCAAGAAAGGTAAG
GGAGGGGCGGGGAGGGAGCTGGAGGTTTTGGACCTGGCATGTGGGAAGGG
CGGCGATTTCACTAAGTGGAGGGAGGTGAGTCGTCGTTACCCCATTGCCC
GATATGTTGGTGTGGACATCGCAAAGAGTTCGTTGGTTGACGCCATTGGC
AGGTATCATCAAGATAACCATATAAGAGGGGCCCTGGGGTCAACTTTGAC
GTTGGCCTGTGCGGACTTGGGAGGGACAGATCTAGTCGAGGACGAGGTGG
AGGTGTGGGAGGCGACGGAGGATAAATGGGACAAGCGGCCACTGCTGGAT
GAGGATGACACATTTGATTGCATCACGATGCAGTTTGCCTTGCATTACAT
GTTTGAGACGGAGGGGCGGGCGAGAAAGTTTCTGCAGGTGGTGGCGACGC
ATTTGAGGAAGGGGGGGAGTTTCATCGCGACTACTGTTGATGCCAGAGTG
GTGGTGGAGATGTTGGTCGGTTTGGGGAGGAGGGAAGGAGGAAAAGGGGG
GGAATGGGTGGCACGATTGGTGGATGAGAAGAAGAGGGAACTGTGTCGGT
TGCAGGTGGATGACGCGACGTATCAGCAGTTATTGAGGCCGGCGAGAAGA
GGAGGTGAAGGAGGGAAGGAGGAAGAAAAGGAAACGCCCTTTTGTGGGTT
AAGGTACAAGTTTTTGTTGAGAGATGGGTCGGAGGAAAATGGAGCGGCGG
ATGCTGTCAATGCACCGGAATGGATGATCCCGTTACCATTTTTAGAGGCG
GCTGCGAAGGAATATGGATTGAAGTTGGAAAAGGCGCAGAATTTTCATGA
GTTGGTGGAGGAGCACAGAGCACATATTGATGGCGGACGGGCGGGGATAC
GTTGGGTGAATTATCAGGGGAGTATAAGTCCGACGGAGTGGGACATTGCG
CGTATTTACGTGGCCTTGAAATTCACGAGGATATGA

Synonyms

Publications