jgi.p|Nanoce1779_2|583892, mRNA_2938 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583892
Unique NamemRNA_2938
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1209
Alignment locationscaffold_7:303166..304374 -

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Properties
Property NameValue
TranscriptId583978
TrackFilteredModels2
ProteinId583892
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:303166..304374 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583892gene_2938Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583892mRNA_2938-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2938CDS_2938Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2938 ID=mRNA_2938|Name=jgi.p|Nanoce1779_2|583892|organism=Nannochloropsis oceanica|type=mRNA|length=1209bp
GTACATCACCACCACCCCCATATCACATACTCACAGGATCTACTACAAAG
CATGATAACTACTTTATCATCTGCATCCTTGTGGATGTCCTGCCGGCGGT
TCGTGGTCAACAAAGGCTGCAGCATACGCCACCTCTTTACACCTCCGTCA
TCTGCACAAAATGCACGCTCTAGATGTCCTCTGCACTCACCCTTCAGCAC
CAGCACCAGCCACGTCGACGACGAGGACGAACATGAGATGTCCTCCACCA
CAACTGGCACCGCTGCCTTTCGCAAGGCTGTACTGGCCCGGCACAGCACC
AAAGTATTTGACGCCACCCGCCAAGTGCCTGACGAGACAGTGGCGGCCAT
CCTAGGCCTCACCCTGCGTAGCCCCACTAGTTTCAACGTCCAGCCCTACA
CCATCACTATCGTCCAATCCAAGGAGATGAAGCAACGATTGGCTGCCTGC
ATGCTTGGCCCAAACAAGGCTAGAGTGCTCCAAGCCCCAATCACGGCCGT
CTTTGCCGCGGACCTCGATCCTGTCAAGCTCGTGCCGCGCCTGCAAGCCA
TGGAACGACAAGAGCGCGGGCTTCCCGAAGCATACCTTGCCACTCTTCCC
TTCAGCGTCTCATTTTTGGCTGGCAAGGGTCATTTGGCTCATGCATTCAA
AGATTTTTTCACGACGGCCATGTCACCTTTGCAACCGATGCCTTCTGTGA
GTACATTGGAAGCGTGGTCTTTCAAGAATACCGCCATAGCTGCCTCGTGG
TACATCATGGCCTGCAGTGCTCATGGGCTTGATACCTGTCCTATGGAGGG
ATTTGATGGTCGGAGGATCATGCAGGTCTTGCGCATTCCCTCCCCGCGGT
ATGCTATCCCTCTGGTAGTCTCCACGGGATTTGAGATGCCTTTGCCGCTT
CCCTCTCATACTGATGCTGCTGCTGATGCTGGGAAAGGAGAAGGGGTGCA
TAAGAAATCTCCCCGATTTCCACCAGAGTCGGTGGTGTTTAAGGAAGCGT
ATGGAAAACCTTTCAAGAATATTCCCGTGCTTTGAGGGAGGCGCGGAGGA
CGGAAAGAGGAAGGGAGTGAGGGAGGGGTGTATGTATAGAACCTTATGGG
GGTGTCACCTTCTTTCAGGAAGAATAGATGAAGGTGGGCGGGGAAAGAGG
ATACTATGTATGTATGTACAAATTGATCGAAATTTTCAAATGGAATAGCA
ATAGCAACG
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protein sequence of jgi.p|Nanoce1779_2|583892

>mRNA_2938-protein ID=mRNA_2938-protein|Name=jgi.p|Nanoce1779_2|583892|organism=Nannochloropsis oceanica|type=polypeptide|length=328bp
MITTLSSASLWMSCRRFVVNKGCSIRHLFTPPSSAQNARSRCPLHSPFST
STSHVDDEDEHEMSSTTTGTAAFRKAVLARHSTKVFDATRQVPDETVAAI
LGLTLRSPTSFNVQPYTITIVQSKEMKQRLAACMLGPNKARVLQAPITAV
FAADLDPVKLVPRLQAMERQERGLPEAYLATLPFSVSFLAGKGHLAHAFK
DFFTTAMSPLQPMPSVSTLEAWSFKNTAIAASWYIMACSAHGLDTCPMEG
FDGRRIMQVLRIPSPRYAIPLVVSTGFEMPLPLPSHTDAAADAGKGEGVH
KKSPRFPPESVVFKEAYGKPFKNIPVL*
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mRNA from alignment at scaffold_7:303166..304374-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2938 ID=mRNA_2938|Name=jgi.p|Nanoce1779_2|583892|organism=Nannochloropsis oceanica|type=mRNA|length=1209bp|location=Sequence derived from alignment at scaffold_7:303166..304374- (Nannochloropsis oceanica)
GTACATCACCACCACCCCCATATCACATACTCACAGGATCTACTACAAAG
CATGATAACTACTTTATCATCTGCATCCTTGTGGATGTCCTGCCGGCGGT
TCGTGGTCAACAAAGGCTGCAGCATACGCCACCTCTTTACACCTCCGTCA
TCTGCACAAAATGCACGCTCTAGATGTCCTCTGCACTCACCCTTCAGCAC
CAGCACCAGCCACGTCGACGACGAGGACGAACATGAGATGTCCTCCACCA
CAACTGGCACCGCTGCCTTTCGCAAGGCTGTACTGGCCCGGCACAGCACC
AAAGTATTTGACGCCACCCGCCAAGTGCCTGACGAGACAGTGGCGGCCAT
CCTAGGCCTCACCCTGCGTAGCCCCACTAGTTTCAACGTCCAGCCCTACA
CCATCACTATCGTCCAATCCAAGGAGATGAAGCAACGATTGGCTGCCTGC
ATGCTTGGCCCAAACAAGGCTAGAGTGCTCCAAGCCCCAATCACGGCCGT
CTTTGCCGCGGACCTCGATCCTGTCAAGCTCGTGCCGCGCCTGCAAGCCA
TGGAACGACAAGAGCGCGGGCTTCCCGAAGCATACCTTGCCACTCTTCCC
TTCAGCGTCTCATTTTTGGCTGGCAAGGGTCATTTGGCTCATGCATTCAA
AGATTTTTTCACGACGGCCATGTCACCTTTGCAACCGATGCCTTCTGTGA
GTACATTGGAAGCGTGGTCTTTCAAGAATACCGCCATAGCTGCCTCGTGG
TACATCATGGCCTGCAGTGCTCATGGGCTTGATACCTGTCCTATGGAGGG
ATTTGATGGTCGGAGGATCATGCAGGTCTTGCGCATTCCCTCCCCGCGGT
ATGCTATCCCTCTGGTAGTCTCCACGGGATTTGAGATGCCTTTGCCGCTT
CCCTCTCATACTGATGCTGCTGCTGATGCTGGGAAAGGAGAAGGGGTGCA
TAAGAAATCTCCCCGATTTCCACCAGAGTCGGTGGTGTTTAAGGAAGCGT
ATGGAAAACCTTTCAAGAATATTCCCGTGCTTTGAGGGAGGCGCGGAGGA
CGGAAAGAGGAAGGGAGTGAGGGAGGGGTGTATGTATAGAACCTTATGGG
GGTGTCACCTTCTTTCAGGAAGAATAGATGAAGGTGGGCGGGGAAAGAGG
ATACTATGTATGTATGTACAAATTGATCGAAATTTTCAAATGGAATAGCA
ATAGCAACG
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Coding sequence (CDS) from alignment at scaffold_7:303166..304374-

>mRNA_2938 ID=mRNA_2938|Name=jgi.p|Nanoce1779_2|583892|organism=Nannochloropsis oceanica|type=CDS|length=984bp|location=Sequence derived from alignment at scaffold_7:303166..304374- (Nannochloropsis oceanica)
ATGATAACTACTTTATCATCTGCATCCTTGTGGATGTCCTGCCGGCGGTT
CGTGGTCAACAAAGGCTGCAGCATACGCCACCTCTTTACACCTCCGTCAT
CTGCACAAAATGCACGCTCTAGATGTCCTCTGCACTCACCCTTCAGCACC
AGCACCAGCCACGTCGACGACGAGGACGAACATGAGATGTCCTCCACCAC
AACTGGCACCGCTGCCTTTCGCAAGGCTGTACTGGCCCGGCACAGCACCA
AAGTATTTGACGCCACCCGCCAAGTGCCTGACGAGACAGTGGCGGCCATC
CTAGGCCTCACCCTGCGTAGCCCCACTAGTTTCAACGTCCAGCCCTACAC
CATCACTATCGTCCAATCCAAGGAGATGAAGCAACGATTGGCTGCCTGCA
TGCTTGGCCCAAACAAGGCTAGAGTGCTCCAAGCCCCAATCACGGCCGTC
TTTGCCGCGGACCTCGATCCTGTCAAGCTCGTGCCGCGCCTGCAAGCCAT
GGAACGACAAGAGCGCGGGCTTCCCGAAGCATACCTTGCCACTCTTCCCT
TCAGCGTCTCATTTTTGGCTGGCAAGGGTCATTTGGCTCATGCATTCAAA
GATTTTTTCACGACGGCCATGTCACCTTTGCAACCGATGCCTTCTGTGAG
TACATTGGAAGCGTGGTCTTTCAAGAATACCGCCATAGCTGCCTCGTGGT
ACATCATGGCCTGCAGTGCTCATGGGCTTGATACCTGTCCTATGGAGGGA
TTTGATGGTCGGAGGATCATGCAGGTCTTGCGCATTCCCTCCCCGCGGTA
TGCTATCCCTCTGGTAGTCTCCACGGGATTTGAGATGCCTTTGCCGCTTC
CCTCTCATACTGATGCTGCTGCTGATGCTGGGAAAGGAGAAGGGGTGCAT
AAGAAATCTCCCCGATTTCCACCAGAGTCGGTGGTGTTTAAGGAAGCGTA
TGGAAAACCTTTCAAGAATATTCCCGTGCTTTGA
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Synonyms
Publications