jgi.p|Nanoce1779_2|583889, mRNA_2937 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|583889
Unique Name	mRNA_2937
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	907
Alignment location	scaffold_7:301429..303131 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	583975
Track	FilteredModels2
ProteinId	583889

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:301429..303131 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583889	gene_2937	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583889	mRNA_2937-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2937	CDS_2937	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:301429..303131+
coding sequence from alignment at scaffold_7:301429..303131+

mRNA sequence

>mRNA_2937 ID=mRNA_2937|Name=jgi.p|Nanoce1779_2|583889|organism=Nannochloropsis oceanica|type=mRNA|length=907bp
CAGCACAGGCTGCCTGGTCCCTCGCTCCTTTACCATGTCTAGCAGCGATA
CAGCCAAGGTTCCCATTGTGGAGTACTGTCCACCATCATCCTTCGCTACG
GACATGAAGGTTTTAAAGCACATGTGGTTTGCAAAGATCGTTCCGGGGCA
ATCGCAGCAGGACCGGCTCGAATCCTTCTACAAACACCAAGCCGACCTGT
ATGACTCCTATCGTTTTCGGATGCTGCACGCTCGCATGCCAATGATTAAG
GCCATGCCCCTCCCTCCCAAAGGCAAGGGTGTATGGTTGGACATTGGAGG
AGGCACCGGCTCGAATCTCGAGTATTTCGCGGAGAATTTGAATCATTTTG
CCAAGGTCATGGTGTTGGATTTGTGCCCTTCCTTGGCGGCGCAGGCCGAA
GAGAGGGTGAAGCGGCATCCGGGATGGAGTTCCTTCGTCCAGGTCATCGT
CGCCGATGCTTGCGACGAAAAAGCTGTCAGTCTCCCGCCCGCCGGCTCCG
TGGACGTCATCACCTTTTCCTATGCTTTGTCCATGATTCCTGACTGGAAA
GCAGCCCTCGCCAATGCCAAGAGGCTGTTGAAAAAAGGCGGCCATCTATG
CGTGTGTGATTTCACGGTGGACGAGACACAGGGATGGGGAATGCAAACAA
TGTGGAGTAAGATCTTCGCATCCGACCATGTATATTTACGCGCAGAGCAC
CGGCCGTTTCTGAGGGAGCAGTTTAAGGCCGTCCATGATGAGTTGGGCTT
CGGCACATTCCCCTATGTCCCACCTGTGATGCGTGCGCCGTGGTACGTGT
TTGTGGGGCAAAAGGTGTGAGGGATGAAAGGAAAAACACGGGGCAGTGGG
AAATGCAAGGCGATGAATGCTTCGGAAAGTAACGAGAAAAAGAAGAAGAG
AGTGGCG

protein sequence of jgi.p|Nanoce1779_2|583889

>mRNA_2937-protein ID=mRNA_2937-protein|Name=jgi.p|Nanoce1779_2|583889|organism=Nannochloropsis oceanica|type=polypeptide|length=262bp
MSSSDTAKVPIVEYCPPSSFATDMKVLKHMWFAKIVPGQSQQDRLESFYK
HQADLYDSYRFRMLHARMPMIKAMPLPPKGKGVWLDIGGGTGSNLEYFAE
NLNHFAKVMVLDLCPSLAAQAEERVKRHPGWSSFVQVIVADACDEKAVSL
PPAGSVDVITFSYALSMIPDWKAALANAKRLLKKGGHLCVCDFTVDETQG
WGMQTMWSKIFASDHVYLRAEHRPFLREQFKAVHDELGFGTFPYVPPVMR
APWYVFVGQKV*

mRNA from alignment at scaffold_7:301429..303131+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2937 ID=mRNA_2937|Name=jgi.p|Nanoce1779_2|583889|organism=Nannochloropsis oceanica|type=mRNA|length=1703bp|location=Sequence derived from alignment at scaffold_7:301429..303131+ (Nannochloropsis oceanica)
CAGCACAGGCTGCCTGGTCCCTCGCTCCTTTACCATGTCTAGCAGCGATA
CAGCCAAGGTTCCCATTGTGGAGTACTGTCCACCATCATCCTTCGCTACG
GACATGAAGGTTTTAAAGCACATGTGGTTTGCAAAGATCGTTCCGGGGCA
ATCGCAGCAGGACCGGGTACGTGTCTTGGCTGGGTTCGAGTCGGGTTTCT
GTAAGTCGCCTTCCCCCCCCCTCCCTAAATTCTGGGTATTACACAATGTA
TCATTTTAACTCCCTCCGCTCGCCCTACCTTCCCAAGCCTTCCTCTTATT
CATTCCCTTTCGTCCTTCGAACGCCCCACCACCCTCATACCAACGCAGCT
CGAATCCTTCTACAAACACCAAGCCGACCTGTATGACTCCTATCGTTTTC
GGATGCTGCACGCTCGCATGCCAATGATTAAGGCCATGCCCCTCCCTCCC
AAAGGCAAGGGTGTATGGTTGGACATTGGAGGAGGTAAGCTTATCGTTTT
CGGGACGAAGAGTGGTGTAACAAGGATTGGCAAAGGCTCGTTATCAACGA
TGATACGTACACACATGTAGGCACCGGCTCGAATCTCGAGTATTTCGCGG
AGAATTTGAATCATTTTGCCAAGGTCATGGTGTTGGATTTGTGCCCTTCC
TTGGCGGCGCAGGCCGAAGAGAGGGTGAAGCGGCATCCGGGATGGAGTTC
CTTCGTCCAGGTAGGTGATGGGCAGTGGGCCCCTTACGACGCCCAACAAT
TGCATTTTGTGGATTTACAATGCACAGGGAGGAAATGGGAGAGCAGGTGA
GGGCGAGTGAGTTCCTCTTGGAGAGATGCCAAGAAGGCTTAGTAAGCAAA
GCCTCAGCTCCCTCGTCCCCTCCCTTTTTCCTTTCCTCCCCTCCCGTTCT
CCTTTCCGTCATCGCTGCGGACTCCTGTGTCAAGGGAAAAACAAGACCCC
CTTCCACCGATATAATGGACGTCGTTCCTTTGCGAAGAGCCTTGTAATTA
ACCCTCCCTCGCTCCCCCCCCCCCCCCCTAAAGGTCATCGTCGCCGATGC
TTGCGACGAAAAAGCTGTCAGTCTCCCGCCCGCCGGCTCCGTGGACGTCA
TCACCTTTTCCTATGCTTTGTCCATGATTCCTGACTGGAAAGCAGCCCTC
GCCAATGCCAAGAGGCTGTTGAAAAAAGGTAGGGAGGGGAGTGGGAGGAA
ATGAGGATAGAAGGAAAGGCGGGGTACGTCATTTGTTTTTAGGAACCAAG
AGCCAATTACCGAAGATCTCATCTCTTATTTCTTCTTCTTTTCCTTCATC
AATTCTTCTTTATCACCTTTTCCCTTTTTTTTCTTTTTCTTTCTTTGTTT
CTTTTTTGCGACTCATATTTGTCAAACACCCAGGCGGCCATCTATGCGTG
TGTGATTTCACGGTGGACGAGACACAGGGATGGGGAATGCAAACAATGTG
GAGTAAGATCTTCGCATCCGACCATGTATATTTACGCGCAGAGCACCGGC
CGTTTCTGAGGGAGCAGTTTAAGGCCGTCCATGATGAGTTGGGCTTCGGC
ACATTCCCCTATGTCCCACCTGTGATGCGTGCGCCGTGGTACGTGTTTGT
GGGGCAAAAGGTGTGAGGGATGAAAGGAAAAACACGGGGCAGTGGGAAAT
GCAAGGCGATGAATGCTTCGGAAAGTAACGAGAAAAAGAAGAAGAGAGTG
GCG

Coding sequence (CDS) from alignment at scaffold_7:301429..303131+

>mRNA_2937 ID=mRNA_2937|Name=jgi.p|Nanoce1779_2|583889|organism=Nannochloropsis oceanica|type=CDS|length=3930bp|location=Sequence derived from alignment at scaffold_7:301429..303131+ (Nannochloropsis oceanica)
ATGTCTAGCAGCGATACAGCCAAGGTTCCCATTGTGGAGTACTGTCCACC
ATCATCCTTCGCTACGGACATGAAGGTTTTAAAGCACATGTGGTTTGCAA
AGATCGTTCCGGGGCAATCGCAGCAGGACCGGCTCGAATCCTTCTACAAA
CACCAAGCCGACCTGTATGACTCCTATCGTTTTCGGATGCTGCACGCTCG
CATGCCAATGATTAAGGCCATGCCCCTCCCTCCCAAAGGCAAGGGTGTAT
GGTTGGACATTGGAGGAGGCACCGGCTCGAATCTCGAGTATTTCGCGGAG
AATTTGAATCATTTTGCCAAGGTCATGGTGTTGGATTTGTGCCCTTCCTT
GGCGGCGCAGGCCGAAGAGAGGGTGAAGCGGCATCCGGGATGGAGTTCCT
TCGTCCAGGTCATCGTCGCCGATGCTTGCGACGAAAAAGCTGTCAGTCTC
CCGCCCGCCGGCTCCGTGGACGTCATCACCTTTTCCTATGCTTTGTCCAT
GATTCCTGACTGGAAAGCAGCCCTCGCCAATGCCAAGAGGCTGTTGAAAA
AAGGCGGCCATCTATGCGTGTGTGATTTCACGGTGGACGAGACACAGGGA
TGGGGAATGCAAACAATGTGGAGTAAGATCTTCGCATCCGACCATGTATA
TTTACGCGCAGAGCACCGGCCGTTTCTGAGGGAGCAGTTTAAGGCCGTCC
ATGATGAGTTGGGCTTCGGCACATTCCCCTATGTCCCACCTGTGATGCGT
GCGCCGTGGTACGTGTTTGTGGGGCAAAAGGTGTGAATGTCTAGCAGCGA
TACAGCCAAGGTTCCCATTGTGGAGTACTGTCCACCATCATCCTTCGCTA
CGGACATGAAGGTTTTAAAGCACATGTGGTTTGCAAAGATCGTTCCGGGG
CAATCGCAGCAGGACCGGCTCGAATCCTTCTACAAACACCAAGCCGACCT
GTATGACTCCTATCGTTTTCGGATGCTGCACGCTCGCATGCCAATGATTA
AGGCCATGCCCCTCCCTCCCAAAGGCAAGGGTGTATGGTTGGACATTGGA
GGAGGCACCGGCTCGAATCTCGAGTATTTCGCGGAGAATTTGAATCATTT
TGCCAAGGTCATGGTGTTGGATTTGTGCCCTTCCTTGGCGGCGCAGGCCG
AAGAGAGGGTGAAGCGGCATCCGGGATGGAGTTCCTTCGTCCAGGTCATC
GTCGCCGATGCTTGCGACGAAAAAGCTGTCAGTCTCCCGCCCGCCGGCTC
CGTGGACGTCATCACCTTTTCCTATGCTTTGTCCATGATTCCTGACTGGA
AAGCAGCCCTCGCCAATGCCAAGAGGCTGTTGAAAAAAGGCGGCCATCTA
TGCGTGTGTGATTTCACGGTGGACGAGACACAGGGATGGGGAATGCAAAC
AATGTGGAGTAAGATCTTCGCATCCGACCATGTATATTTACGCGCAGAGC
ACCGGCCGTTTCTGAGGGAGCAGTTTAAGGCCGTCCATGATGAGTTGGGC
TTCGGCACATTCCCCTATGTCCCACCTGTGATGCGTGCGCCGTGGTACGT
GTTTGTGGGGCAAAAGGTGTGAATGTCTAGCAGCGATACAGCCAAGGTTC
CCATTGTGGAGTACTGTCCACCATCATCCTTCGCTACGGACATGAAGGTT
TTAAAGCACATGTGGTTTGCAAAGATCGTTCCGGGGCAATCGCAGCAGGA
CCGGCTCGAATCCTTCTACAAACACCAAGCCGACCTGTATGACTCCTATC
GTTTTCGGATGCTGCACGCTCGCATGCCAATGATTAAGGCCATGCCCCTC
CCTCCCAAAGGCAAGGGTGTATGGTTGGACATTGGAGGAGGCACCGGCTC
GAATCTCGAGTATTTCGCGGAGAATTTGAATCATTTTGCCAAGGTCATGG
TGTTGGATTTGTGCCCTTCCTTGGCGGCGCAGGCCGAAGAGAGGGTGAAG
CGGCATCCGGGATGGAGTTCCTTCGTCCAGGTCATCGTCGCCGATGCTTG
CGACGAAAAAGCTGTCAGTCTCCCGCCCGCCGGCTCCGTGGACGTCATCA
CCTTTTCCTATGCTTTGTCCATGATTCCTGACTGGAAAGCAGCCCTCGCC
AATGCCAAGAGGCTGTTGAAAAAAGGCGGCCATCTATGCGTGTGTGATTT
CACGGTGGACGAGACACAGGGATGGGGAATGCAAACAATGTGGAGTAAGA
TCTTCGCATCCGACCATGTATATTTACGCGCAGAGCACCGGCCGTTTCTG
AGGGAGCAGTTTAAGGCCGTCCATGATGAGTTGGGCTTCGGCACATTCCC
CTATGTCCCACCTGTGATGCGTGCGCCGTGGTACGTGTTTGTGGGGCAAA
AGGTGTGAATGTCTAGCAGCGATACAGCCAAGGTTCCCATTGTGGAGTAC
TGTCCACCATCATCCTTCGCTACGGACATGAAGGTTTTAAAGCACATGTG
GTTTGCAAAGATCGTTCCGGGGCAATCGCAGCAGGACCGGCTCGAATCCT
TCTACAAACACCAAGCCGACCTGTATGACTCCTATCGTTTTCGGATGCTG
CACGCTCGCATGCCAATGATTAAGGCCATGCCCCTCCCTCCCAAAGGCAA
GGGTGTATGGTTGGACATTGGAGGAGGCACCGGCTCGAATCTCGAGTATT
TCGCGGAGAATTTGAATCATTTTGCCAAGGTCATGGTGTTGGATTTGTGC
CCTTCCTTGGCGGCGCAGGCCGAAGAGAGGGTGAAGCGGCATCCGGGATG
GAGTTCCTTCGTCCAGGTCATCGTCGCCGATGCTTGCGACGAAAAAGCTG
TCAGTCTCCCGCCCGCCGGCTCCGTGGACGTCATCACCTTTTCCTATGCT
TTGTCCATGATTCCTGACTGGAAAGCAGCCCTCGCCAATGCCAAGAGGCT
GTTGAAAAAAGGCGGCCATCTATGCGTGTGTGATTTCACGGTGGACGAGA
CACAGGGATGGGGAATGCAAACAATGTGGAGTAAGATCTTCGCATCCGAC
CATGTATATTTACGCGCAGAGCACCGGCCGTTTCTGAGGGAGCAGTTTAA
GGCCGTCCATGATGAGTTGGGCTTCGGCACATTCCCCTATGTCCCACCTG
TGATGCGTGCGCCGTGGTACGTGTTTGTGGGGCAAAAGGTGTGAATGTCT
AGCAGCGATACAGCCAAGGTTCCCATTGTGGAGTACTGTCCACCATCATC
CTTCGCTACGGACATGAAGGTTTTAAAGCACATGTGGTTTGCAAAGATCG
TTCCGGGGCAATCGCAGCAGGACCGGCTCGAATCCTTCTACAAACACCAA
GCCGACCTGTATGACTCCTATCGTTTTCGGATGCTGCACGCTCGCATGCC
AATGATTAAGGCCATGCCCCTCCCTCCCAAAGGCAAGGGTGTATGGTTGG
ACATTGGAGGAGGCACCGGCTCGAATCTCGAGTATTTCGCGGAGAATTTG
AATCATTTTGCCAAGGTCATGGTGTTGGATTTGTGCCCTTCCTTGGCGGC
GCAGGCCGAAGAGAGGGTGAAGCGGCATCCGGGATGGAGTTCCTTCGTCC
AGGTCATCGTCGCCGATGCTTGCGACGAAAAAGCTGTCAGTCTCCCGCCC
GCCGGCTCCGTGGACGTCATCACCTTTTCCTATGCTTTGTCCATGATTCC
TGACTGGAAAGCAGCCCTCGCCAATGCCAAGAGGCTGTTGAAAAAAGGCG
GCCATCTATGCGTGTGTGATTTCACGGTGGACGAGACACAGGGATGGGGA
ATGCAAACAATGTGGAGTAAGATCTTCGCATCCGACCATGTATATTTACG
CGCAGAGCACCGGCCGTTTCTGAGGGAGCAGTTTAAGGCCGTCCATGATG
AGTTGGGCTTCGGCACATTCCCCTATGTCCCACCTGTGATGCGTGCGCCG
TGGTACGTGTTTGTGGGGCAAAAGGTGTGA

Synonyms

Publications