jgi.p|Nanoce1779_2|583873, mRNA_2935 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|583873
Unique Name	mRNA_2935
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2247
Alignment location	scaffold_7:297032..299421 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	583959
Track	FilteredModels2
ProteinId	583873

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:297032..299421 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583873	gene_2935	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583873	mRNA_2935-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2935	CDS_2935	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:297032..299421+
coding sequence from alignment at scaffold_7:297032..299421+

mRNA sequence

>mRNA_2935 ID=mRNA_2935|Name=jgi.p|Nanoce1779_2|583873|organism=Nannochloropsis oceanica|type=mRNA|length=2247bp
ACAGGGGGAAGGAACCCACCGTAAGAACCTGTACAGTACCCTCACTACCG
CTGAGACCGACGTTATTACGAGTCCATGCCTTCCTCGTCCTCTTCCGGCG
TCACCGGTGCGGCTTCCTCCGCCATCATACAACATGACGGAGCTCGCCGC
CGGGTGATCGTCCTGGGTTGCGCCGCCTCCTTTATCGTCACCTTTCTTAT
CCGTCGCTACCGCTCCAAAGACACCGACTCCAACAGAAAAGGCAGTGGCG
TCTTCAAATCTACCTCCGAACGCACGTTTCGACAGTATCCCCAAAACTAC
CCCACGGTCAGGCCACGGAACGGCGGCGCTTCAGGAGGCATCGGACAACA
CACAGGCACTGCCGTCGCCGCAGCAGGAGGGGTAGGGCCCTTGAGTTCCA
CAGGGTTAAATGGTACTTTGGACTTTTCGCATCCTGATGGTCCGAATATA
GGGCCTGCGTCTGACCCAGCGTGGCTGGAGAATCATGACCAGCAGGGGAT
ACCAGCAAAGACGGATTTGCTGCATACGGGACATTTAAAAGGGGGTAAAT
TGTTAATTTGTGTGATTGGGCTGCCAGCACGGGGGAAGACGTATATAGCA
CGGAAGGTCGCGCGGTATTTGAGGTGGATTAATTATCGGACAAGGGTGTT
TTGTCTGGCGAGGTATAGACAGGACAAATACGGGCATAAGCAGGCGGCAG
AATTTTTTGATACGAGCAATGAGGAGTATACGTCGTCGAGAATGGAGCTG
TTGGCGTGTGCATTGGAGGACTCGGTGGGATATTTGAATCGAGGTGGGGA
GGTGGCGATTTTGGATGGGACGAATGTGACTGAGGCGAGGCGGAGGTTGA
TTCGGGAGAGGATGCAGAGGGAGGACGGGTATGAGATCTTGTGGATTGAG
TCGATCTGCGAGGACCCCCAGGTGATTGCCCATAATGTCGCCCAGCTGAG
GGAGGCTAGTCCTGACTATGTTGCGGACCATGATTTTGAGAGGAGGATTG
CGTTCTATAAGATTGATTATGTCCATGTCCGGGAGGATGAGGGGAGTTAT
GCAAAGGTCTTCGATGCGGGTCGGAAGTTGGAGTTGAACCGCATTCATGG
GTTTTTGCCGACCAAAGTTATTTCGTTTCTGATGAATTTGCATATCATGC
CTAGGCCGGTTTATTTCACCAGACACGGCGAGTCCATCTTCAATATCCAC
GGACTGATAGGCGGCGACTCATCCCTCTCCCCCAAAGGCGAGAAGTTCGC
CGACCTCCTTTCTCTCTTTATTCATAATGAAACCGAGCTTCCCCATGACC
AGCTAAACGTCTGGACAAGTACCATGAAGCGTGCCCGTGCTACGGCCGCC
AAAATTAAATGCGCGCGTTATGTTGAATGGCGTTCTCTGCGAGAGATCGA
GGTAGGGGTGTGCGATGGCCTGAGCTACGAACAAATGAAGGAGAACTTTC
CGCACGAGTACAAGAACCGCGAGCAGGATAAGCTCCGATATCGGTACCCC
CGGGGGGAGAGCTATATGGACATCATTTCGAGGTTGGAGAGTGTGATTTT
CGAGCTTGAACGGCAGCAGGGTCCGGTGGTGATTGTCGCCCACCAGGCAG
TGCTGAGGTGCTTGTATGCATACTTCCTGGACTTGCCCCCGGAGGAGGTG
CCGTACCTGTCTATTCCCTTGCACACGGTGATAAAGGTCACGCCCAAGGC
GTATGGATGTGCGGAGAAGCGATATAAGATGATGGTATGAGCGGGAGAGA
GGAGAGGAAGGAGGGAAGCGTTTGAGCTTGGAAAGAGGATGAAGGGAGAA
TGAAGCAGGGGTCTTCATTAAGCTTGAAGTTGTAAATATAGATAGGTAGG
TGCTAGGCAGGTCAATAGAGATTATGCAAGAAGGATATGAAAATGACGTC
GTGCTTCGTCTCGTTGCTTCGTCTTGTTTTGTGTGGTAGGGAGGTGATGG
GAAGTCCGGTGGAGAAAAAAAAAAGGGGGAGGAGGAGGAGAAAGAGGAGA
AGGAGATGAAGGAGAGGGGAGGATGAACTGAGACCAGGGATAAGGAGGAT
AAGATAGAGAGTGAGGAAAGAGAGAGTGGGAGGAAACATAAGAGCTTGAG
AAGGCCTGTATCTGAATGGAGGGAAAGCGAGGAAATAGCAGAAAAAAGGA
TGAGCGGCAAGCATACAGCAATTGCAATGGCAGGATAGATAGACTGCCTT
CCATGAAATCGACCTAAAAAGAAAGAAAGAAAAACATTCCTTGGAAA

protein sequence of jgi.p|Nanoce1779_2|583873

>mRNA_2935-protein ID=mRNA_2935-protein|Name=jgi.p|Nanoce1779_2|583873|organism=Nannochloropsis oceanica|type=polypeptide|length=555bp
MPSSSSSGVTGAASSAIIQHDGARRRVIVLGCAASFIVTFLIRRYRSKDT
DSNRKGSGVFKSTSERTFRQYPQNYPTVRPRNGGASGGIGQHTGTAVAAA
GGVGPLSSTGLNGTLDFSHPDGPNIGPASDPAWLENHDQQGIPAKTDLLH
TGHLKGGKLLICVIGLPARGKTYIARKVARYLRWINYRTRVFCLARYRQD
KYGHKQAAEFFDTSNEEYTSSRMELLACALEDSVGYLNRGGEVAILDGTN
VTEARRRLIRERMQREDGYEILWIESICEDPQVIAHNVAQLREASPDYVA
DHDFERRIAFYKIDYVHVREDEGSYAKVFDAGRKLELNRIHGFLPTKVIS
FLMNLHIMPRPVYFTRHGESIFNIHGLIGGDSSLSPKGEKFADLLSLFIH
NETELPHDQLNVWTSTMKRARATAAKIKCARYVEWRSLREIEVGVCDGLS
YEQMKENFPHEYKNREQDKLRYRYPRGESYMDIISRLESVIFELERQQGP
VVIVAHQAVLRCLYAYFLDLPPEEVPYLSIPLHTVIKVTPKAYGCAEKRY
KMMV*

mRNA from alignment at scaffold_7:297032..299421+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2935 ID=mRNA_2935|Name=jgi.p|Nanoce1779_2|583873|organism=Nannochloropsis oceanica|type=mRNA|length=2390bp|location=Sequence derived from alignment at scaffold_7:297032..299421+ (Nannochloropsis oceanica)
ACAGGGGGAAGGAACCCACCGTAAGAACCTGTACAGTACCCTCACTACCG
CTGAGACCGACGTTATTACGAGTCCATGCCTTCCTCGTCCTCTTCCGGCG
TCACCGGTGCGGCTTCCTCCGCCATCATACAACATGACGGAGCTCGCCGC
CGGGTGATCGTCCTGGGTTGCGCCGCCTCCTTTATCGTCACCTTTCTTAT
CCGTCGCTACCGCTCCAAAGACACCGACTCCAACAGAAAAGGCAGTGGCG
TCTTCAAATCTACCTCCGAACGCACGTTTCGACAGTATCCCCAAAACTAC
CCCACGGTCAGGCCACGGAACGGCGGCGCTTCAGGAGGCATCGGACAACA
CACAGGCACTGCCGTCGCCGCAGCAGGAGGGGTAGGGCCCTTGAGTTCCA
CAGGGTTAAATGGTACTTTGGACTTTTCGCATCCTGATGGTCCGAATATA
GGGCCTGCGTCTGACCCAGCGTGGCTGGAGAATCATGACCAGCAGGGGAT
ACCAGCAAAGACGGATTTGCTGCATACGGGACATTTAAAAGGGGGTAAAT
TGTTAATTTGTGTGATTGGGCTGCCAGCACGGGGGAAGACGTATATAGCA
CGGAAGGTCGCGCGGTATTTGAGGTGGATTAATTATCGGACAAGGGTGTT
TTGTCTGGCGAGGTATAGACAGGACAAATACGGGCATAAGCAGGCGGCAG
AATTTTTTGATACGAGCAATGAGGAGTATACGTCGTCGAGAATGGAGCTG
TTGGCGTGTGCATTGGAGGACTCGGTGGGATATTTGAATCGAGGTGGGGA
GGTGGCGATTTTGGATGGGACGAATGTGACTGAGGCGAGGCGGAGGTTGA
TTCGGGAGAGGATGCAGAGGGAGGACGGGTATGAGATCTTGTGGATTGAG
TCGATCTGCGAGGACCCCCAGGTGATTGCCCATAATGTCGCCCAGCTGAG
GGAGGCTAGTCCTGACTATGTTGCGGACCATGATTTTGAGAGGAGGATTG
CGTTCTATAAGATTGATTATGTCCATGTCCGGGAGGATGAGGGGAGTTAT
GCAAAGGTCTTCGATGCGGGTCGGAAGTTGGAGTTGAACCGCATTCATGG
GTTTTTGCCGACCAAAGTTATTTCGTTTCTGATGAATTTGCATATCATGC
CTAGGCCGGTTTATTTCACCAGGTGAGGAAAGGAGGGAGGGAGGGAAAGG
GCTCGATGTCGTATCGTCGGTCTCATTTCTTCCGTGCTGCAGTCGTCGAC
ACTCATGCACGAACTCCCCTCCTTCCCTCCTTCTCTCCCCTCTCTTGTTT
TCCTCGGCCCGTTAGACACGGCGAGTCCATCTTCAATATCCACGGACTGA
TAGGCGGCGACTCATCCCTCTCCCCCAAAGGCGAGAAGTTCGCCGACCTC
CTTTCTCTCTTTATTCATAATGAAACCGAGCTTCCCCATGACCAGCTAAA
CGTCTGGACAAGTACCATGAAGCGTGCCCGTGCTACGGCCGCCAAAATTA
AATGCGCGCGTTATGTTGAATGGCGTTCTCTGCGAGAGATCGAGGTAGGG
GTGTGCGATGGCCTGAGCTACGAACAAATGAAGGAGAACTTTCCGCACGA
GTACAAGAACCGCGAGCAGGATAAGCTCCGATATCGGTACCCCCGGGGGG
AGAGCTATATGGACATCATTTCGAGGTTGGAGAGTGTGATTTTCGAGCTT
GAACGGCAGCAGGGTCCGGTGGTGATTGTCGCCCACCAGGCAGTGCTGAG
GTGCTTGTATGCATACTTCCTGGACTTGCCCCCGGAGGAGGTGCCGTACC
TGTCTATTCCCTTGCACACGGTGATAAAGGTCACGCCCAAGGCGTATGGA
TGTGCGGAGAAGCGATATAAGATGATGGTATGAGCGGGAGAGAGGAGAGG
AAGGAGGGAAGCGTTTGAGCTTGGAAAGAGGATGAAGGGAGAATGAAGCA
GGGGTCTTCATTAAGCTTGAAGTTGTAAATATAGATAGGTAGGTGCTAGG
CAGGTCAATAGAGATTATGCAAGAAGGATATGAAAATGACGTCGTGCTTC
GTCTCGTTGCTTCGTCTTGTTTTGTGTGGTAGGGAGGTGATGGGAAGTCC
GGTGGAGAAAAAAAAAAGGGGGAGGAGGAGGAGAAAGAGGAGAAGGAGAT
GAAGGAGAGGGGAGGATGAACTGAGACCAGGGATAAGGAGGATAAGATAG
AGAGTGAGGAAAGAGAGAGTGGGAGGAAACATAAGAGCTTGAGAAGGCCT
GTATCTGAATGGAGGGAAAGCGAGGAAATAGCAGAAAAAAGGATGAGCGG
CAAGCATACAGCAATTGCAATGGCAGGATAGATAGACTGCCTTCCATGAA
ATCGACCTAAAAAGAAAGAAAGAAAAACATTCCTTGGAAA

Coding sequence (CDS) from alignment at scaffold_7:297032..299421+

>mRNA_2935 ID=mRNA_2935|Name=jgi.p|Nanoce1779_2|583873|organism=Nannochloropsis oceanica|type=CDS|length=3330bp|location=Sequence derived from alignment at scaffold_7:297032..299421+ (Nannochloropsis oceanica)
ATGCCTTCCTCGTCCTCTTCCGGCGTCACCGGTGCGGCTTCCTCCGCCAT
CATACAACATGACGGAGCTCGCCGCCGGGTGATCGTCCTGGGTTGCGCCG
CCTCCTTTATCGTCACCTTTCTTATCCGTCGCTACCGCTCCAAAGACACC
GACTCCAACAGAAAAGGCAGTGGCGTCTTCAAATCTACCTCCGAACGCAC
GTTTCGACAGTATCCCCAAAACTACCCCACGGTCAGGCCACGGAACGGCG
GCGCTTCAGGAGGCATCGGACAACACACAGGCACTGCCGTCGCCGCAGCA
GGAGGGGTAGGGCCCTTGAGTTCCACAGGGTTAAATGGTACTTTGGACTT
TTCGCATCCTGATGGTCCGAATATAGGGCCTGCGTCTGACCCAGCGTGGC
TGGAGAATCATGACCAGCAGGGGATACCAGCAAAGACGGATTTGCTGCAT
ACGGGACATTTAAAAGGGGGTAAATTGTTAATTTGTGTGATTGGGCTGCC
AGCACGGGGGAAGACGTATATAGCACGGAAGGTCGCGCGGTATTTGAGGT
GGATTAATTATCGGACAAGGGTGTTTTGTCTGGCGAGGTATAGACAGGAC
AAATACGGGCATAAGCAGGCGGCAGAATTTTTTGATACGAGCAATGAGGA
GTATACGTCGTCGAGAATGGAGCTGTTGGCGTGTGCATTGGAGGACTCGG
TGGGATATTTGAATCGAGGTGGGGAGGTGGCGATTTTGGATGGGACGAAT
GTGACTGAGGCGAGGCGGAGGTTGATTCGGGAGAGGATGCAGAGGGAGGA
CGGGTATGAGATCTTGTGGATTGAGTCGATCTGCGAGGACCCCCAGGTGA
TTGCCCATAATGTCGCCCAGCTGAGGGAGGCTAGTCCTGACTATGTTGCG
GACCATGATTTTGAGAGGAGGATTGCGTTCTATAAGATTGATTATGTCCA
TGTCCGGGAGGATGAGGGGAGTTATGCAAAGGTCTTCGATGCGGGTCGGA
AGTTGGAGTTGAACCGCATTCATGGGTTTTTGCCGACCAAAGTTATTTCG
TTTCTGATGAATTTGCATATCATGCCTAGGCCGGTTTATTTCACCAGACA
CGGCGAGTCCATCTTCAATATCCACGGACTGATAGGCGGCGACTCATCCC
TCTCCCCCAAAGGCGAGAAGTTCGCCGACCTCCTTTCTCTCTTTATTCAT
AATGAAACCGAGCTTCCCCATGACCAGCTAAACGTCTGGACAAGTACCAT
GAAGCGTGCCCGTGCTACGGCCGCCAAAATTAAATGCGCGCGTTATGTTG
AATGGCGTTCTCTGCGAGAGATCGAGGTAGGGGTGTGCGATGGCCTGAGC
TACGAACAAATGAAGGAGAACTTTCCGCACGAGTACAAGAACCGCGAGCA
GGATAAGCTCCGATATCGGTACCCCCGGGGGGAGAGCTATATGGACATCA
TTTCGAGGTTGGAGAGTGTGATTTTCGAGCTTGAACGGCAGCAGGGTCCG
GTGGTGATTGTCGCCCACCAGGCAGTGCTGAGGTGCTTGTATGCATACTT
CCTGGACTTGCCCCCGGAGGAGGTGCCGTACCTGTCTATTCCCTTGCACA
CGGTGATAAAGGTCACGCCCAAGGCGTATGGATGTGCGGAGAAGCGATAT
AAGATGATGGTATGAATGCCTTCCTCGTCCTCTTCCGGCGTCACCGGTGC
GGCTTCCTCCGCCATCATACAACATGACGGAGCTCGCCGCCGGGTGATCG
TCCTGGGTTGCGCCGCCTCCTTTATCGTCACCTTTCTTATCCGTCGCTAC
CGCTCCAAAGACACCGACTCCAACAGAAAAGGCAGTGGCGTCTTCAAATC
TACCTCCGAACGCACGTTTCGACAGTATCCCCAAAACTACCCCACGGTCA
GGCCACGGAACGGCGGCGCTTCAGGAGGCATCGGACAACACACAGGCACT
GCCGTCGCCGCAGCAGGAGGGGTAGGGCCCTTGAGTTCCACAGGGTTAAA
TGGTACTTTGGACTTTTCGCATCCTGATGGTCCGAATATAGGGCCTGCGT
CTGACCCAGCGTGGCTGGAGAATCATGACCAGCAGGGGATACCAGCAAAG
ACGGATTTGCTGCATACGGGACATTTAAAAGGGGGTAAATTGTTAATTTG
TGTGATTGGGCTGCCAGCACGGGGGAAGACGTATATAGCACGGAAGGTCG
CGCGGTATTTGAGGTGGATTAATTATCGGACAAGGGTGTTTTGTCTGGCG
AGGTATAGACAGGACAAATACGGGCATAAGCAGGCGGCAGAATTTTTTGA
TACGAGCAATGAGGAGTATACGTCGTCGAGAATGGAGCTGTTGGCGTGTG
CATTGGAGGACTCGGTGGGATATTTGAATCGAGGTGGGGAGGTGGCGATT
TTGGATGGGACGAATGTGACTGAGGCGAGGCGGAGGTTGATTCGGGAGAG
GATGCAGAGGGAGGACGGGTATGAGATCTTGTGGATTGAGTCGATCTGCG
AGGACCCCCAGGTGATTGCCCATAATGTCGCCCAGCTGAGGGAGGCTAGT
CCTGACTATGTTGCGGACCATGATTTTGAGAGGAGGATTGCGTTCTATAA
GATTGATTATGTCCATGTCCGGGAGGATGAGGGGAGTTATGCAAAGGTCT
TCGATGCGGGTCGGAAGTTGGAGTTGAACCGCATTCATGGGTTTTTGCCG
ACCAAAGTTATTTCGTTTCTGATGAATTTGCATATCATGCCTAGGCCGGT
TTATTTCACCAGACACGGCGAGTCCATCTTCAATATCCACGGACTGATAG
GCGGCGACTCATCCCTCTCCCCCAAAGGCGAGAAGTTCGCCGACCTCCTT
TCTCTCTTTATTCATAATGAAACCGAGCTTCCCCATGACCAGCTAAACGT
CTGGACAAGTACCATGAAGCGTGCCCGTGCTACGGCCGCCAAAATTAAAT
GCGCGCGTTATGTTGAATGGCGTTCTCTGCGAGAGATCGAGGTAGGGGTG
TGCGATGGCCTGAGCTACGAACAAATGAAGGAGAACTTTCCGCACGAGTA
CAAGAACCGCGAGCAGGATAAGCTCCGATATCGGTACCCCCGGGGGGAGA
GCTATATGGACATCATTTCGAGGTTGGAGAGTGTGATTTTCGAGCTTGAA
CGGCAGCAGGGTCCGGTGGTGATTGTCGCCCACCAGGCAGTGCTGAGGTG
CTTGTATGCATACTTCCTGGACTTGCCCCCGGAGGAGGTGCCGTACCTGT
CTATTCCCTTGCACACGGTGATAAAGGTCACGCCCAAGGCGTATGGATGT
GCGGAGAAGCGATATAAGATGATGGTATGA

Synonyms

Publications