jgi.p|Nanoce1779_2|583855, mRNA_2931 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583855
Unique NamemRNA_2931
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1383
Alignment locationscaffold_7:281651..283164 -

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Properties
Property NameValue
TranscriptId583941
TrackFilteredModels2
ProteinId583855
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:281651..283164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583855gene_2931Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583855mRNA_2931-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2931CDS_2931Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2931 ID=mRNA_2931|Name=jgi.p|Nanoce1779_2|583855|organism=Nannochloropsis oceanica|type=mRNA|length=1383bp
AGGACCTAACAGCGTATCACGTAGACCACGCCATCCAGCTCCTCATCGTC
TCCAGCATTGTGAAAGTGAACAGGGGGACCACATAGACGTTCTGATCCTC
ACCCCACTCAAATTCCGAAGACCACCATGTCCTCCTCCTTCCCTGATTTC
ACGCCGGGGACTGCCCTATGCGGAGGTGCACTGATCGCTATGTCGGCGCT
GCTGTACCTGGTCGTGGCTGGAAGACGTGCAGGCATTTCAGGCATATTTT
CCACCGGCCTCCTCTCCCTCCTCTCCCTTCGACCTCTTGACCCCCTCTCC
ACCACATTCCTCTCTGCCTTCTTCCTCGCCGCACTCGCTGCCCCCCTCTT
CCTCCCTTCCTCCCCCCCCTCCTCCTCTTTCTCCTTCCCTCCCGCTGCCT
ACCTCATCAGCGGCCTCCTGGTCGGGTTCGGGACCCGCCTCGGAAACGGC
TGTACCTCCGGCCATGGTGTATGTGGCTTGTCCCGCCTTTCCAAACGAGG
AGCGGTCGCCGTCCTGACATTTATGACAACCGGTATCAGCGTTGCCACCT
ACCTGGGTACCCACCCCCATCCCTCCCTCCGTCCCTCATCCTCCTTCCCT
TCCAAACACGATCTTCCGTTCTCTTCTCAGTCCTGGACCCCCATTATCCT
CCTCCTTTCCCTCCTCCTTTTCTTCTTCAAACTCCCCACGAAAGCTTCCC
ACCCTCCCTCCCTCCACCTCGCCGCCTTCCTTTCAGGGGCTCTCTTTGCC
TCGGGCCTCTTTTTAAGCGGCATGTCACTTCAAGCCAAGGTAGTCAACTT
CCTTTACCCCCGCGTCCCAGGGTGGGACCCCTCCCTCCTCCTCGTCCTTG
GAGCTGCAGTTGGTCTGCTAACTCCTTTCTCGCTCTACGTACTGTCACAC
CAACCGTCCGCATGGGGCGATCCTTCGGTCAAATTGTTTGCCGACAAGGG
GCCCTTAGCGGTGAGTAAAGCAGAAAAAGTCGACTGGAAGCTTGTGGTGG
GTGAGGCCGTGTTTGGGATCGGGTGGGGAATGATTGGGCTGTGCCCCGGG
CCAGCGTTGGTGTTGCTGGCGCAGGGGGATAGGAAGGTGGTGTGTTTTTT
CATGCCCTTGTATGTGGTGGGCTATCTGGGGGCGAGCCAGTTGGAGGGGA
AGAAGAAGACAAAGTGATGGCCCTGGGAGAAAGACAGAAATGGCTGTCGG
AAATAAGCGGTGCTGTGAACACCACGAAAAAAAGAAGAGAAAGAAGAAAA
AGAGAGGTAGTTGTACCAGAAGACGACTAAGAAATAGTAGTAGTAGTAGT
GGTAGAAGAAGAAAAGAAGAAGATCTAGAGAAAGAACAAGAAGAAGAACA
AGAAAAAGAAATTGGATTAACAGAAACGAAAAA
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protein sequence of jgi.p|Nanoce1779_2|583855

>mRNA_2931-protein ID=mRNA_2931-protein|Name=jgi.p|Nanoce1779_2|583855|organism=Nannochloropsis oceanica|type=polypeptide|length=347bp
MSSSFPDFTPGTALCGGALIAMSALLYLVVAGRRAGISGIFSTGLLSLLS
LRPLDPLSTTFLSAFFLAALAAPLFLPSSPPSSSFSFPPAAYLISGLLVG
FGTRLGNGCTSGHGVCGLSRLSKRGAVAVLTFMTTGISVATYLGTHPHPS
LRPSSSFPSKHDLPFSSQSWTPIILLLSLLLFFFKLPTKASHPPSLHLAA
FLSGALFASGLFLSGMSLQAKVVNFLYPRVPGWDPSLLLVLGAAVGLLTP
FSLYVLSHQPSAWGDPSVKLFADKGPLAVSKAEKVDWKLVVGEAVFGIGW
GMIGLCPGPALVLLAQGDRKVVCFFMPLYVVGYLGASQLEGKKKTK*
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mRNA from alignment at scaffold_7:281651..283164-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2931 ID=mRNA_2931|Name=jgi.p|Nanoce1779_2|583855|organism=Nannochloropsis oceanica|type=mRNA|length=1514bp|location=Sequence derived from alignment at scaffold_7:281651..283164- (Nannochloropsis oceanica)
AGGACCTAACAGCGTATCACGTAGACCACGCCATCCAGCTCCTCATCGTC
TCCAGCATTGTGAAAGTGAACAGGGGGACCACATAGACGTTCTGATCCTC
ACCCCACTCAAATTCCGAAGACCACCATGTCCTCCTCCTTCCCTGATTTC
ACGCCGGGGACTGCCCTATGCGGAGGTGCACTGATCGCTATGTCGGCGCT
GCTGTACCTGGTCGTGGCTGGAAGACGTGCAGGCATTTCAGGTTCGTGCA
AAATCTAAGGGAATGGAAGATCTCCCGGTGTGCACGGAAGTTTTGACACA
CGAGATGTCAGCATACACATTTTTACTCTCGCCTTTTCACCCCCCTTTCC
CTTTCCTCCCCACCAACCACAGGCATATTTTCCACCGGCCTCCTCTCCCT
CCTCTCCCTTCGACCTCTTGACCCCCTCTCCACCACATTCCTCTCTGCCT
TCTTCCTCGCCGCACTCGCTGCCCCCCTCTTCCTCCCTTCCTCCCCCCCC
TCCTCCTCTTTCTCCTTCCCTCCCGCTGCCTACCTCATCAGCGGCCTCCT
GGTCGGGTTCGGGACCCGCCTCGGAAACGGCTGTACCTCCGGCCATGGTG
TATGTGGCTTGTCCCGCCTTTCCAAACGAGGAGCGGTCGCCGTCCTGACA
TTTATGACAACCGGTATCAGCGTTGCCACCTACCTGGGTACCCACCCCCA
TCCCTCCCTCCGTCCCTCATCCTCCTTCCCTTCCAAACACGATCTTCCGT
TCTCTTCTCAGTCCTGGACCCCCATTATCCTCCTCCTTTCCCTCCTCCTT
TTCTTCTTCAAACTCCCCACGAAAGCTTCCCACCCTCCCTCCCTCCACCT
CGCCGCCTTCCTTTCAGGGGCTCTCTTTGCCTCGGGCCTCTTTTTAAGCG
GCATGTCACTTCAAGCCAAGGTAGTCAACTTCCTTTACCCCCGCGTCCCA
GGGTGGGACCCCTCCCTCCTCCTCGTCCTTGGAGCTGCAGTTGGTCTGCT
AACTCCTTTCTCGCTCTACGTACTGTCACACCAACCGTCCGCATGGGGCG
ATCCTTCGGTCAAATTGTTTGCCGACAAGGGGCCCTTAGCGGTGAGTAAA
GCAGAAAAAGTCGACTGGAAGCTTGTGGTGGGTGAGGCCGTGTTTGGGAT
CGGGTGGGGAATGATTGGGCTGTGCCCCGGGCCAGCGTTGGTGTTGCTGG
CGCAGGGGGATAGGAAGGTGGTGTGTTTTTTCATGCCCTTGTATGTGGTG
GGCTATCTGGGGGCGAGCCAGTTGGAGGGGAAGAAGAAGACAAAGTGATG
GCCCTGGGAGAAAGACAGAAATGGCTGTCGGAAATAAGCGGTGCTGTGAA
CACCACGAAAAAAAGAAGAGAAAGAAGAAAAAGAGAGGTAGTTGTACCAG
AAGACGACTAAGAAATAGTAGTAGTAGTAGTGGTAGAAGAAGAAAAGAAG
AAGATCTAGAGAAAGAACAAGAAGAAGAACAAGAAAAAGAAATTGGATTA
ACAGAAACGAAAAA
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Coding sequence (CDS) from alignment at scaffold_7:281651..283164-

>mRNA_2931 ID=mRNA_2931|Name=jgi.p|Nanoce1779_2|583855|organism=Nannochloropsis oceanica|type=CDS|length=2082bp|location=Sequence derived from alignment at scaffold_7:281651..283164- (Nannochloropsis oceanica)
GCATATTTTCCACCGGCCTCCTCTCCCTCCTCTCCCTTCGACCTCTTGAC
CCCCTCTCCACCACATTCCTCTCTGCCTTCTTCCTCGCCGCACTCGCTGC
CCCCCTCTTCCTCCCTTCCTCCCCCCCCTCCTCCTCTTTCTCCTTCCCTC
CCGCTGCCTACCTCATCAGCGGCCTCCTGGTCGGGTTCGGGACCCGCCTC
GGAAACGGCTGTACCTCCGGCCATGGTGTATGTGGCTTGTCCCGCCTTTC
CAAACGAGGAGCGGTCGCCGTCCTGACATTTATGACAACCGGTATCAGCG
TTGCCACCTACCTGGGTACCCACCCCCATCCCTCCCTCCGTCCCTCATCC
TCCTTCCCTTCCAAACACGATCTTCCGTTCTCTTCTCAGTCCTGGACCCC
CATTATCCTCCTCCTTTCCCTCCTCCTTTTCTTCTTCAAACTCCCCACGA
AAGCTTCCCACCCTCCCTCCCTCCACCTCGCCGCCTTCCTTTCAGGGGCT
CTCTTTGCCTCGGGCCTCTTTTTAAGCGGCATGTCACTTCAAGCCAAGGT
AGTCAACTTCCTTTACCCCCGCGTCCCAGGGTGGGACCCCTCCCTCCTCC
TCGTCCTTGGAGCTGCAGTTGGTCTGCTAACTCCTTTCTCGCTCTACGTA
CTGTCACACCAACCGTCCGCATGGGGCGATCCTTCGGTCAAATTGTTTGC
CGACAAGGGGCCCTTAGCGGTGAGTAAAGCAGAAAAAGTCGACTGGAAGC
TTGTGGTGGGTGAGGCCGTGTTTGGGATCGGGTGGGGAATGATTGGGCTG
TGCCCCGGGCCAGCGTTGGTGTTGCTGGCGCAGGGGGATAGGAAGGTGGT
GTGTTTTTTCATGCCCTTGTATGTGGTGGGCTATCTGGGGGCGAGCCAGT
TGGAGGGGAAGAAGAAGACAAAGTGAATGTCCTCCTCCTTCCCTGATTTC
ACGCCGGGGACTGCCCTATGCGGAGGTGCACTGATCGCTATGTCGGCGCT
GCTGTACCTGGTCGTGGCTGGAAGACGTGCAGGCATTTCAGGCATATTTT
CCACCGGCCTCCTCTCCCTCCTCTCCCTTCGACCTCTTGACCCCCTCTCC
ACCACATTCCTCTCTGCCTTCTTCCTCGCCGCACTCGCTGCCCCCCTCTT
CCTCCCTTCCTCCCCCCCCTCCTCCTCTTTCTCCTTCCCTCCCGCTGCCT
ACCTCATCAGCGGCCTCCTGGTCGGGTTCGGGACCCGCCTCGGAAACGGC
TGTACCTCCGGCCATGGTGTATGTGGCTTGTCCCGCCTTTCCAAACGAGG
AGCGGTCGCCGTCCTGACATTTATGACAACCGGTATCAGCGTTGCCACCT
ACCTGGGTACCCACCCCCATCCCTCCCTCCGTCCCTCATCCTCCTTCCCT
TCCAAACACGATCTTCCGTTCTCTTCTCAGTCCTGGACCCCCATTATCCT
CCTCCTTTCCCTCCTCCTTTTCTTCTTCAAACTCCCCACGAAAGCTTCCC
ACCCTCCCTCCCTCCACCTCGCCGCCTTCCTTTCAGGGGCTCTCTTTGCC
TCGGGCCTCTTTTTAAGCGGCATGTCACTTCAAGCCAAGGTAGTCAACTT
CCTTTACCCCCGCGTCCCAGGGTGGGACCCCTCCCTCCTCCTCGTCCTTG
GAGCTGCAGTTGGTCTGCTAACTCCTTTCTCGCTCTACGTACTGTCACAC
CAACCGTCCGCATGGGGCGATCCTTCGGTCAAATTGTTTGCCGACAAGGG
GCCCTTAGCGGTGAGTAAAGCAGAAAAAGTCGACTGGAAGCTTGTGGTGG
GTGAGGCCGTGTTTGGGATCGGGTGGGGAATGATTGGGCTGTGCCCCGGG
CCAGCGTTGGTGTTGCTGGCGCAGGGGGATAGGAAGGTGGTGTGTTTTTT
CATGCCCTTGTATGTGGTGGGCTATCTGGGGGCGAGCCAGTTGGAGGGGA
AGAAGAAGACAAAGTGAATGTCCTCCTCCTTCCCTGATTTCACGCCGGGG
ACTGCCCTATGCGGAGGTGCACTGATCGCTATGTCGGCGCTGCTGTACCT
GGTCGTGGCTGGAAGACGTGCAGGCATTTCAG
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Synonyms
Publications