jgi.p|Nanoce1779_2|583853, mRNA_2930 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|583853
Unique Name	mRNA_2930
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1413
Alignment location	scaffold_7:280069..281650 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	583939
Track	FilteredModels2
ProteinId	583853

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:280069..281650 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583853	gene_2930	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583853	mRNA_2930-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2930	CDS_2930	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:280069..281650+
coding sequence from alignment at scaffold_7:280069..281650+

mRNA sequence

>mRNA_2930 ID=mRNA_2930|Name=jgi.p|Nanoce1779_2|583853|organism=Nannochloropsis oceanica|type=mRNA|length=1413bp
AGCCACAGTTGCCGTAGAAAACGCGGCGGCCGACGGCGGCGCGAGCGTCA
TGCGTCATCATGAGGTTCTAGCAACCCTCGTCCTCCTCCTTCTAACACAC
ACCACGCAAGCCTTTGGTCCTCCCACCATGCACCACCACCAACAACAGAA
GCATAGATATCCGCAGCAGCAGTCAACGCCTCGGCACAAGCCTCTTCAAC
TGCCCCCCATCCCCGCCGCTTGGCGCCTCATGCTCCTCGCCCTCCTATGG
CCTGTCACCTCTCTGTCTCCCCTTTCCGCCCTTGCTGCCCCAGCCGCCGG
TGCCATGACTTCTACCACAACAGTCGCGGATGAGAAAACACCAAAGATCG
ACCTGTCCACCATTTCCAAACTGCAAGACCAGGCCTTTTCAGCCACCAAT
CGTTTTCAATGGAAGGAAGCTGAGCGGGCATGGACCAGAGTGATTGACGT
GGACCCCGAGAATGCCGCCGCCATTAGCAACAGGGGCAACACGAGGACAT
CCATGGGTCTCTGTAAGGAAGCCAAGGAGGATTTCAATCGTGCCATTGAA
CTGGCACCGAACGAACCGGATCCGAATCTGGGAAGAGGGGTCGCAGAAGA
GTGTCTTGGTGAATTTGAGGCTGCCTTGGGAGACTACGCGGAGGCGAACA
AGAAGAACATCGCTTTGACTGGAAGAGAAGACCCAGTAACTTATAATAAC
CGTGCGAATGCCGAGGCTGGGTTAGGGAGATGGGAGGATGCCGTGCGAGA
TTATAAGCGAGCAGCCAAAATGCAGCCAGGATATGTGTTTCCGTTGGCCA
GCGCCGCGCTTGCATCTTATCAAATAGGAGATGATGCCGAGGCAATCAAG
CAAATGCGATTGCTCCTGGTTAAATATCCGGAGCTCGTGGACATGAAAGC
GGCGTTGGCTGTGATTTATTGGAAGCAAGGAGATTTTGCCAAGGCCGAGA
CAGCCTGGTACAATGTCCTGAATGAAGATCCCAGGTATCGAAGGCTGGAA
TGGGTCAGGGCGGTCCGACGATGGCCCCCCAGAATGGTTGAAGAATTAGA
TGCCTTCCTTAACTTCAAACTGCCAGGGGCGAGCAAAGCGGCGAAATTTA
AGGCAGCAGCGGCCGAAAAAGCGGCAGCAGCGGCCGAAGCTGCGTCGTCG
CCAGTAGCGGAGGAGGCAGCAGCAGGAACAGCAGCTGCAGAAGGGGTTGT
CGGTGTGTGAGTGTAGAGTGTAGTTATGTGTGTAGGTAGGTGTACATCTA
CGTGTATGTGTGCTTGTCAGAAGACCCGAGAAATAAAAGAGCCGGCACAC
TCAGTCACACACTTGCAGCAACAAGAAAGCAACTCACGCATAAGACAGTT
AATAAAGCAGCATAAGCAGCAGGAGGAGGAGGATGAGAAGGAAGCGATGT
CGAGCATGGTTGA

protein sequence of jgi.p|Nanoce1779_2|583853

>mRNA_2930-protein ID=mRNA_2930-protein|Name=jgi.p|Nanoce1779_2|583853|organism=Nannochloropsis oceanica|type=polypeptide|length=387bp
MRHHEVLATLVLLLLTHTTQAFGPPTMHHHQQQKHRYPQQQSTPRHKPLQ
LPPIPAAWRLMLLALLWPVTSLSPLSALAAPAAGAMTSTTTVADEKTPKI
DLSTISKLQDQAFSATNRFQWKEAERAWTRVIDVDPENAAAISNRGNTRT
SMGLCKEAKEDFNRAIELAPNEPDPNLGRGVAEECLGEFEAALGDYAEAN
KKNIALTGREDPVTYNNRANAEAGLGRWEDAVRDYKRAAKMQPGYVFPLA
SAALASYQIGDDAEAIKQMRLLLVKYPELVDMKAALAVIYWKQGDFAKAE
TAWYNVLNEDPRYRRLEWVRAVRRWPPRMVEELDAFLNFKLPGASKAAKF
KAAAAEKAAAAAEAASSPVAEEAAAGTAAAEGVVGV*

mRNA from alignment at scaffold_7:280069..281650+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2930 ID=mRNA_2930|Name=jgi.p|Nanoce1779_2|583853|organism=Nannochloropsis oceanica|type=mRNA|length=1582bp|location=Sequence derived from alignment at scaffold_7:280069..281650+ (Nannochloropsis oceanica)
AGCCACAGTTGCCGTAGAAAACGCGGCGGCCGACGGCGGCGCGAGCGTCA
TGCGTCATCATGAGGTTCTAGCAACCCTCGTCCTCCTCCTTCTAACACAC
ACCACGCAAGCCTTTGGTCCTCCCACCATGCACCACCACCAACAACAGAA
GCATAGATATCCGCAGCAGCAGTCAACGCCTCGGCACAAGCCTCTTCAAC
TGCCCCCCATCCCCGCCGCTTGGCGCCTCATGCTCCTCGCCCTCCTATGG
CCTGTCACCTCTCTGTCTCCCCTTTCCGCCCTTGCTGCCCCAGCCGCCGG
TGCCATGACTTCTACCACAACAGTCGCGGATGAGAAAACACCAAAGATCG
ACCTGTCCACCATTTCCAAACTGCAAGACCAGGCCTTTTCAGCCACCAAT
CGTTTTCAATGGAAGGAAGCTGAGCGGGCATGGACCAGAGTGATTGACGT
GGACCCCGAGAATGCCGCCGCCATTAGCAACAGGGGCAACACGAGGACAT
CCATGGGTCTCTGTAAGGAAGCCAAGGAGGATTTCAATCGTGCCATTGAA
CTGGCACCGAACGAACCGGATCCGAATCTGGGAAGAGGGGTCGCAGAAGA
GTGTCTTGGTGAATTTGAGGCTGCCTTGGGAGACTACGCGGAGGCGAACA
AGAAGAACATCGCTTTGACTGGAAGAGAAGACCCAGTAACTTATAATAAC
CGTGCGAATGCCGAGGCTGGGTTAGGGAGATGGGAGGATGCCGTGCGAGA
TTATAAGCGAGCAGCCAAAATGCAGCCAGGATATGTGTTTCCGTTGGCCA
GCGCCGCGCTTGCATCTTATCAAATAGGAGATGATGCCGAGGCAATCAAG
CAAATGCGATTGCTCCTGGTTAAATATCCGGAGCTCGTGGACATGAAAGC
GGCGTTGGCTGTGATTTATTGGAAGCAAGGAGATTTTGCCAAGGCCGAGA
CAGCCTGGTACAATGTCCTGAATGAAGATCCCAGGTAAGGGAGGGCGGGA
GGGAGGACCTGCCCAGGGATGGGAGGGATGGGAGAGATGGGAGAATGCGG
GTGTTTGCCTGATCCTTCACCATCCCATTTTTTATCTTTTTGTTTCTCAT
GCGCCATGTCCTACTTCTCCTCCTCCTCCCTTCTCCATACATTCCACTTG
CAGGTATCGAAGGCTGGAATGGGTCAGGGCGGTCCGACGATGGCCCCCCA
GAATGGTTGAAGAATTAGATGCCTTCCTTAACTTCAAACTGCCAGGGGCG
AGCAAAGCGGCGAAATTTAAGGCAGCAGCGGCCGAAAAAGCGGCAGCAGC
GGCCGAAGCTGCGTCGTCGCCAGTAGCGGAGGAGGCAGCAGCAGGAACAG
CAGCTGCAGAAGGGGTTGTCGGTGTGTGAGTGTAGAGTGTAGTTATGTGT
GTAGGTAGGTGTACATCTACGTGTATGTGTGCTTGTCAGAAGACCCGAGA
AATAAAAGAGCCGGCACACTCAGTCACACACTTGCAGCAACAAGAAAGCA
ACTCACGCATAAGACAGTTAATAAAGCAGCATAAGCAGCAGGAGGAGGAG
GATGAGAAGGAAGCGATGTCGAGCATGGTTGA

Coding sequence (CDS) from alignment at scaffold_7:280069..281650+

>mRNA_2930 ID=mRNA_2930|Name=jgi.p|Nanoce1779_2|583853|organism=Nannochloropsis oceanica|type=CDS|length=2322bp|location=Sequence derived from alignment at scaffold_7:280069..281650+ (Nannochloropsis oceanica)
ATGCGTCATCATGAGGTTCTAGCAACCCTCGTCCTCCTCCTTCTAACACA
CACCACGCAAGCCTTTGGTCCTCCCACCATGCACCACCACCAACAACAGA
AGCATAGATATCCGCAGCAGCAGTCAACGCCTCGGCACAAGCCTCTTCAA
CTGCCCCCCATCCCCGCCGCTTGGCGCCTCATGCTCCTCGCCCTCCTATG
GCCTGTCACCTCTCTGTCTCCCCTTTCCGCCCTTGCTGCCCCAGCCGCCG
GTGCCATGACTTCTACCACAACAGTCGCGGATGAGAAAACACCAAAGATC
GACCTGTCCACCATTTCCAAACTGCAAGACCAGGCCTTTTCAGCCACCAA
TCGTTTTCAATGGAAGGAAGCTGAGCGGGCATGGACCAGAGTGATTGACG
TGGACCCCGAGAATGCCGCCGCCATTAGCAACAGGGGCAACACGAGGACA
TCCATGGGTCTCTGTAAGGAAGCCAAGGAGGATTTCAATCGTGCCATTGA
ACTGGCACCGAACGAACCGGATCCGAATCTGGGAAGAGGGGTCGCAGAAG
AGTGTCTTGGTGAATTTGAGGCTGCCTTGGGAGACTACGCGGAGGCGAAC
AAGAAGAACATCGCTTTGACTGGAAGAGAAGACCCAGTAACTTATAATAA
CCGTGCGAATGCCGAGGCTGGGTTAGGGAGATGGGAGGATGCCGTGCGAG
ATTATAAGCGAGCAGCCAAAATGCAGCCAGGATATGTGTTTCCGTTGGCC
AGCGCCGCGCTTGCATCTTATCAAATAGGAGATGATGCCGAGGCAATCAA
GCAAATGCGATTGCTCCTGGTTAAATATCCGGAGCTCGTGGACATGAAAG
CGGCGTTGGCTGTGATTTATTGGAAGCAAGGAGATTTTGCCAAGGCCGAG
ACAGCCTGGTACAATGTCCTGAATGAAGATCCCAGGTATCGAAGGCTGGA
ATGGGTCAGGGCGGTCCGACGATGGCCCCCCAGAATGGTTGAAGAATTAG
ATGCCTTCCTTAACTTCAAACTGCCAGGGGCGAGCAAAGCGGCGAAATTT
AAGGCAGCAGCGGCCGAAAAAGCGGCAGCAGCGGCCGAAGCTGCGTCGTC
GCCAGTAGCGGAGGAGGCAGCAGCAGGAACAGCAGCTGCAGAAGGGGTTG
TCGGTGTGTGAATGCGTCATCATGAGGTTCTAGCAACCCTCGTCCTCCTC
CTTCTAACACACACCACGCAAGCCTTTGGTCCTCCCACCATGCACCACCA
CCAACAACAGAAGCATAGATATCCGCAGCAGCAGTCAACGCCTCGGCACA
AGCCTCTTCAACTGCCCCCCATCCCCGCCGCTTGGCGCCTCATGCTCCTC
GCCCTCCTATGGCCTGTCACCTCTCTGTCTCCCCTTTCCGCCCTTGCTGC
CCCAGCCGCCGGTGCCATGACTTCTACCACAACAGTCGCGGATGAGAAAA
CACCAAAGATCGACCTGTCCACCATTTCCAAACTGCAAGACCAGGCCTTT
TCAGCCACCAATCGTTTTCAATGGAAGGAAGCTGAGCGGGCATGGACCAG
AGTGATTGACGTGGACCCCGAGAATGCCGCCGCCATTAGCAACAGGGGCA
ACACGAGGACATCCATGGGTCTCTGTAAGGAAGCCAAGGAGGATTTCAAT
CGTGCCATTGAACTGGCACCGAACGAACCGGATCCGAATCTGGGAAGAGG
GGTCGCAGAAGAGTGTCTTGGTGAATTTGAGGCTGCCTTGGGAGACTACG
CGGAGGCGAACAAGAAGAACATCGCTTTGACTGGAAGAGAAGACCCAGTA
ACTTATAATAACCGTGCGAATGCCGAGGCTGGGTTAGGGAGATGGGAGGA
TGCCGTGCGAGATTATAAGCGAGCAGCCAAAATGCAGCCAGGATATGTGT
TTCCGTTGGCCAGCGCCGCGCTTGCATCTTATCAAATAGGAGATGATGCC
GAGGCAATCAAGCAAATGCGATTGCTCCTGGTTAAATATCCGGAGCTCGT
GGACATGAAAGCGGCGTTGGCTGTGATTTATTGGAAGCAAGGAGATTTTG
CCAAGGCCGAGACAGCCTGGTACAATGTCCTGAATGAAGATCCCAGGTAT
CGAAGGCTGGAATGGGTCAGGGCGGTCCGACGATGGCCCCCCAGAATGGT
TGAAGAATTAGATGCCTTCCTTAACTTCAAACTGCCAGGGGCGAGCAAAG
CGGCGAAATTTAAGGCAGCAGCGGCCGAAAAAGCGGCAGCAGCGGCCGAA
GCTGCGTCGTCGCCAGTAGCGGAGGAGGCAGCAGCAGGAACAGCAGCTGC
AGAAGGGGTTGTCGGTGTGTGA

Synonyms

Publications