jgi.p|Nanoce1779_2|576842, mRNA_293 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576842
Unique Name	mRNA_293
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2659
Alignment location	scaffold_3:723841..726499 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576928
Track	FilteredModels2
ProteinId	576842

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:723841..726499 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576842	gene_293	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576842	mRNA_293-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_293	CDS_293	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:723841..726499+
coding sequence from alignment at scaffold_3:723841..726499+

mRNA sequence

>mRNA_293 ID=mRNA_293|Name=jgi.p|Nanoce1779_2|576842|organism=Nannochloropsis oceanica|type=mRNA|length=2659bp
TCTTCTTCTTCTTCTTCTTCTTCTCCTCATCCTTCTTATCGCCCTTCTCA
ACAATTCCAACACCCTCATTTACCCTACCCTGGCGCTGGTATGGTGGCCC
CACGCCCTCCACACACGATGGGAATGGGAGTGTATGGGTCGTCCATGTTT
CCTCATAATTTTCAGCCACATATGGTAGGACCACCGTCCATGCCACCGCC
TCATTTTGGAACTGGGCACCCTATGCAGATGGCACAATCCATTGAGATGG
GTTCAGTTGCAATGATTAATGCAGGTTTCAATAATAATCATGTCAACAGC
AGTCGGTATCCTGGTCCACCCCCTCCTCCACTTCCTCATCACCCCCCCCT
GGCTCCTTCTCCTCCTTCTGCTCCAAGTGTGGTTTCCAATGGTGGTGGAG
GAGGAGGCGCTGGCGAAGGAAATATGAGCGCCGGCACGAAGAACAGCCCG
CTTGGAGATGACCAGCAACTCCGCTCCTTCTCCTCGTCCTCCTCCTCTTC
TTATACCCCCACCTTTCCCTCTGGCGACACACCTGCTTCCGCTGCTAGGG
GACACACCGTTGGAAGCCGGGGAGTGCATAGAGAGGCGATGGGGAACAGT
AACAGCAGCAGCAGTATTGATGCCAATTTTAATGAAGCGATCGCTCCTTC
TTCCATCACCGACCCTGTTCTGCGCCAGCAGGTTCAACGACATCTCCAGC
TGCAGTACCAGAAGCAACAACAGCGGGAGCGGCAGCATGGGGGATTGTGC
GAGCAGAAACAGCACATAGTTAGCGGCAGCGATGGCGATAATGGTGCCTG
GCCCTCGATGTCTAATCAGTGGCCCGACCGAGATATGCGCGAAAGAGGAC
CACCGATCTCCAGCGGTTCGTCATCCTTCAGAGGGGAGACTTTATTCGAA
GGGCCTGGGGCTGGTGTTAGTACTCGTACTAATGGTGCTGCAGGCTCAAT
AGGCGCTCCCCTTTGTCTCTCTTCCAATCAGCCAATATACCCGCCCTTTG
GATCCTTAGGTGGGGGAGGGGAAGTAGTAGGAGGAGGAGAAATAGGAAGG
GGGCCTTCAGTCACGAGCACCACTAGGGGAACCGGGAACAACAATAATAA
CAAGGGCGGTATCACCAGCATCAGTAGCGGGAGCAGCAGCGACGAGTGTG
GAGGGGATGGGAGAGGAAGTGATGACGGAAGTGTTTGCATTATCCGGAGT
GGCGACGGGGCGGTCTCGATGGCTAATGCGAGGAAGGGACGGATGGAGGG
AAACACGAACGAGCATGTAAGCAGCAACAGCATCAGCAGCAGCAACGATG
GCGACATCAAGGCGACCAGCCACGGTTTCAACACCACGAGAATGATAAAC
CACGACGCTGAGCCAGTCGCTGCTGCTGCTGCTGCTGGTGCTGCAAACGT
TACAGCGACAGAAGCATTAAACACGGTGAATGGAGCTGCAGCAGTGATGG
AGGCCGTGTCCCCAAGCAGCACACCTTTGCAAATGAAGGGCCATTTGATT
AGCATACTTTCGGGGGGGGACGTCGCCGTGGAGCGGACGCGGCACCTGCT
CACCTCCTGGCATTTGTGGAGTTTGGAAGGGGGAGGGCTTAGCAACAGCA
GCAGCAGTAGCAGCAGTGTCAGTAGCACTAGCAAATGTGGCCCTGTGGGG
GAGTCTACTGTGAAAGCAGAACCTGGACAGGCGAAGGAGGATTTGAGGGA
ACTGGCAAATTTGATTCAATTAACATTGCCTCCGTCAGTGGCTGCGTGGG
CGAAGAGCCGTGGGGCCATGGGTGGCACGGTGGCGGCGACTGAGGAACAG
GAGCAGGTACAGAGTTTTTTGGATATGTGTGTGGATGATGATGGATCAGC
GATTTGTAGTGCTGTTTACAGTGGGGGGAGGTTGCAGCTGACTTTGAATT
CGAGGTTTGCTGCTATGTATATGACGCTGGAAGAGTTGGAGACGACAGTG
GCGAGGGATAGGTTGAGACCAGAGTTGGTGTGGCGGCAGTTGTTGAGTCC
TGAATGTTTCTCGGCATATGATGAGGCGCTATGTCAGGCGTATTTTAAGG
GGCAGAACTTGGGGGGAGAGGCATGTGAGATTATAAAGTGCGTGGATAGG
TTTGGGCTTGAAATGCCGTGTTTCATGCGACTGCGCATCTTTGCGTCGTC
ACAAGGGGCCATTACGGCTTCGGTTATATTCTTGTTGCCGTTGCAGTTAT
CCCAGTTAGTGGAGGCCTCGTGAAGTGGCGGAGACCAGAGCGGGGGGGGT
GAAGCATATGAGTTATTGACTGGAAAGTAAAAGAGAGCAGAGTGGGAGGA
ACAAAAGGCAAGACACATGATCTACTTAAAAATGTTCTAAGAGTGTGGCT
GGAAAGGATAAGGGAAGAGCCAGGGGAGTGTCACACGAAATATATAAAGT
GCCCCCTCCCCCCCCCGCCGCACCCTCCAAAAGCAGTTTCCGCGACAAAA
ACATGTCAGGAGTGGATAAAAAGGAGGTGAGGATCGATCGATCCAGTGCA
TAAATACATTAACAAAGAGGTAGTCAGCTGAATGAAAAGAAGAGAAGAAA
GTGTAAAGCGAGACTTGATTGAACGCCTTTACTTGTGTTGTTGTTCCACG
AGATCTGCTTGAAGGGCAAGCAAGGGGTCCCTACCCGGAAGAAGCAAGGA
TTCTTGTCA

protein sequence of jgi.p|Nanoce1779_2|576842

>mRNA_293-protein ID=mRNA_293-protein|Name=jgi.p|Nanoce1779_2|576842|organism=Nannochloropsis oceanica|type=polypeptide|length=711bp
MVAPRPPHTMGMGVYGSSMFPHNFQPHMVGPPSMPPPHFGTGHPMQMAQS
IEMGSVAMINAGFNNNHVNSSRYPGPPPPPLPHHPPLAPSPPSAPSVVSN
GGGGGGAGEGNMSAGTKNSPLGDDQQLRSFSSSSSSSYTPTFPSGDTPAS
AARGHTVGSRGVHREAMGNSNSSSSIDANFNEAIAPSSITDPVLRQQVQR
HLQLQYQKQQQRERQHGGLCEQKQHIVSGSDGDNGAWPSMSNQWPDRDMR
ERGPPISSGSSSFRGETLFEGPGAGVSTRTNGAAGSIGAPLCLSSNQPIY
PPFGSLGGGGEVVGGGEIGRGPSVTSTTRGTGNNNNNKGGITSISSGSSS
DECGGDGRGSDDGSVCIIRSGDGAVSMANARKGRMEGNTNEHVSSNSISS
SNDGDIKATSHGFNTTRMINHDAEPVAAAAAAGAANVTATEALNTVNGAA
AVMEAVSPSSTPLQMKGHLISILSGGDVAVERTRHLLTSWHLWSLEGGGL
SNSSSSSSSVSSTSKCGPVGESTVKAEPGQAKEDLRELANLIQLTLPPSV
AAWAKSRGAMGGTVAATEEQEQVQSFLDMCVDDDGSAICSAVYSGGRLQL
TLNSRFAAMYMTLEELETTVARDRLRPELVWRQLLSPECFSAYDEALCQA
YFKGQNLGGEACEIIKCVDRFGLEMPCFMRLRIFASSQGAITASVIFLLP
LQLSQLVEAS*

mRNA from alignment at scaffold_3:723841..726499+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_293 ID=mRNA_293|Name=jgi.p|Nanoce1779_2|576842|organism=Nannochloropsis oceanica|type=mRNA|length=2659bp|location=Sequence derived from alignment at scaffold_3:723841..726499+ (Nannochloropsis oceanica)
TCTTCTTCTTCTTCTTCTTCTTCTCCTCATCCTTCTTATCGCCCTTCTCA
ACAATTCCAACACCCTCATTTACCCTACCCTGGCGCTGGTATGGTGGCCC
CACGCCCTCCACACACGATGGGAATGGGAGTGTATGGGTCGTCCATGTTT
CCTCATAATTTTCAGCCACATATGGTAGGACCACCGTCCATGCCACCGCC
TCATTTTGGAACTGGGCACCCTATGCAGATGGCACAATCCATTGAGATGG
GTTCAGTTGCAATGATTAATGCAGGTTTCAATAATAATCATGTCAACAGC
AGTCGGTATCCTGGTCCACCCCCTCCTCCACTTCCTCATCACCCCCCCCT
GGCTCCTTCTCCTCCTTCTGCTCCAAGTGTGGTTTCCAATGGTGGTGGAG
GAGGAGGCGCTGGCGAAGGAAATATGAGCGCCGGCACGAAGAACAGCCCG
CTTGGAGATGACCAGCAACTCCGCTCCTTCTCCTCGTCCTCCTCCTCTTC
TTATACCCCCACCTTTCCCTCTGGCGACACACCTGCTTCCGCTGCTAGGG
GACACACCGTTGGAAGCCGGGGAGTGCATAGAGAGGCGATGGGGAACAGT
AACAGCAGCAGCAGTATTGATGCCAATTTTAATGAAGCGATCGCTCCTTC
TTCCATCACCGACCCTGTTCTGCGCCAGCAGGTTCAACGACATCTCCAGC
TGCAGTACCAGAAGCAACAACAGCGGGAGCGGCAGCATGGGGGATTGTGC
GAGCAGAAACAGCACATAGTTAGCGGCAGCGATGGCGATAATGGTGCCTG
GCCCTCGATGTCTAATCAGTGGCCCGACCGAGATATGCGCGAAAGAGGAC
CACCGATCTCCAGCGGTTCGTCATCCTTCAGAGGGGAGACTTTATTCGAA
GGGCCTGGGGCTGGTGTTAGTACTCGTACTAATGGTGCTGCAGGCTCAAT
AGGCGCTCCCCTTTGTCTCTCTTCCAATCAGCCAATATACCCGCCCTTTG
GATCCTTAGGTGGGGGAGGGGAAGTAGTAGGAGGAGGAGAAATAGGAAGG
GGGCCTTCAGTCACGAGCACCACTAGGGGAACCGGGAACAACAATAATAA
CAAGGGCGGTATCACCAGCATCAGTAGCGGGAGCAGCAGCGACGAGTGTG
GAGGGGATGGGAGAGGAAGTGATGACGGAAGTGTTTGCATTATCCGGAGT
GGCGACGGGGCGGTCTCGATGGCTAATGCGAGGAAGGGACGGATGGAGGG
AAACACGAACGAGCATGTAAGCAGCAACAGCATCAGCAGCAGCAACGATG
GCGACATCAAGGCGACCAGCCACGGTTTCAACACCACGAGAATGATAAAC
CACGACGCTGAGCCAGTCGCTGCTGCTGCTGCTGCTGGTGCTGCAAACGT
TACAGCGACAGAAGCATTAAACACGGTGAATGGAGCTGCAGCAGTGATGG
AGGCCGTGTCCCCAAGCAGCACACCTTTGCAAATGAAGGGCCATTTGATT
AGCATACTTTCGGGGGGGGACGTCGCCGTGGAGCGGACGCGGCACCTGCT
CACCTCCTGGCATTTGTGGAGTTTGGAAGGGGGAGGGCTTAGCAACAGCA
GCAGCAGTAGCAGCAGTGTCAGTAGCACTAGCAAATGTGGCCCTGTGGGG
GAGTCTACTGTGAAAGCAGAACCTGGACAGGCGAAGGAGGATTTGAGGGA
ACTGGCAAATTTGATTCAATTAACATTGCCTCCGTCAGTGGCTGCGTGGG
CGAAGAGCCGTGGGGCCATGGGTGGCACGGTGGCGGCGACTGAGGAACAG
GAGCAGGTACAGAGTTTTTTGGATATGTGTGTGGATGATGATGGATCAGC
GATTTGTAGTGCTGTTTACAGTGGGGGGAGGTTGCAGCTGACTTTGAATT
CGAGGTTTGCTGCTATGTATATGACGCTGGAAGAGTTGGAGACGACAGTG
GCGAGGGATAGGTTGAGACCAGAGTTGGTGTGGCGGCAGTTGTTGAGTCC
TGAATGTTTCTCGGCATATGATGAGGCGCTATGTCAGGCGTATTTTAAGG
GGCAGAACTTGGGGGGAGAGGCATGTGAGATTATAAAGTGCGTGGATAGG
TTTGGGCTTGAAATGCCGTGTTTCATGCGACTGCGCATCTTTGCGTCGTC
ACAAGGGGCCATTACGGCTTCGGTTATATTCTTGTTGCCGTTGCAGTTAT
CCCAGTTAGTGGAGGCCTCGTGAAGTGGCGGAGACCAGAGCGGGGGGGGT
GAAGCATATGAGTTATTGACTGGAAAGTAAAAGAGAGCAGAGTGGGAGGA
ACAAAAGGCAAGACACATGATCTACTTAAAAATGTTCTAAGAGTGTGGCT
GGAAAGGATAAGGGAAGAGCCAGGGGAGTGTCACACGAAATATATAAAGT
GCCCCCTCCCCCCCCCGCCGCACCCTCCAAAAGCAGTTTCCGCGACAAAA
ACATGTCAGGAGTGGATAAAAAGGAGGTGAGGATCGATCGATCCAGTGCA
TAAATACATTAACAAAGAGGTAGTCAGCTGAATGAAAAGAAGAGAAGAAA
GTGTAAAGCGAGACTTGATTGAACGCCTTTACTTGTGTTGTTGTTCCACG
AGATCTGCTTGAAGGGCAAGCAAGGGGTCCCTACCCGGAAGAAGCAAGGA
TTCTTGTCA

Coding sequence (CDS) from alignment at scaffold_3:723841..726499+

>mRNA_293 ID=mRNA_293|Name=jgi.p|Nanoce1779_2|576842|organism=Nannochloropsis oceanica|type=CDS|length=2133bp|location=Sequence derived from alignment at scaffold_3:723841..726499+ (Nannochloropsis oceanica)
ATGGTGGCCCCACGCCCTCCACACACGATGGGAATGGGAGTGTATGGGTC
GTCCATGTTTCCTCATAATTTTCAGCCACATATGGTAGGACCACCGTCCA
TGCCACCGCCTCATTTTGGAACTGGGCACCCTATGCAGATGGCACAATCC
ATTGAGATGGGTTCAGTTGCAATGATTAATGCAGGTTTCAATAATAATCA
TGTCAACAGCAGTCGGTATCCTGGTCCACCCCCTCCTCCACTTCCTCATC
ACCCCCCCCTGGCTCCTTCTCCTCCTTCTGCTCCAAGTGTGGTTTCCAAT
GGTGGTGGAGGAGGAGGCGCTGGCGAAGGAAATATGAGCGCCGGCACGAA
GAACAGCCCGCTTGGAGATGACCAGCAACTCCGCTCCTTCTCCTCGTCCT
CCTCCTCTTCTTATACCCCCACCTTTCCCTCTGGCGACACACCTGCTTCC
GCTGCTAGGGGACACACCGTTGGAAGCCGGGGAGTGCATAGAGAGGCGAT
GGGGAACAGTAACAGCAGCAGCAGTATTGATGCCAATTTTAATGAAGCGA
TCGCTCCTTCTTCCATCACCGACCCTGTTCTGCGCCAGCAGGTTCAACGA
CATCTCCAGCTGCAGTACCAGAAGCAACAACAGCGGGAGCGGCAGCATGG
GGGATTGTGCGAGCAGAAACAGCACATAGTTAGCGGCAGCGATGGCGATA
ATGGTGCCTGGCCCTCGATGTCTAATCAGTGGCCCGACCGAGATATGCGC
GAAAGAGGACCACCGATCTCCAGCGGTTCGTCATCCTTCAGAGGGGAGAC
TTTATTCGAAGGGCCTGGGGCTGGTGTTAGTACTCGTACTAATGGTGCTG
CAGGCTCAATAGGCGCTCCCCTTTGTCTCTCTTCCAATCAGCCAATATAC
CCGCCCTTTGGATCCTTAGGTGGGGGAGGGGAAGTAGTAGGAGGAGGAGA
AATAGGAAGGGGGCCTTCAGTCACGAGCACCACTAGGGGAACCGGGAACA
ACAATAATAACAAGGGCGGTATCACCAGCATCAGTAGCGGGAGCAGCAGC
GACGAGTGTGGAGGGGATGGGAGAGGAAGTGATGACGGAAGTGTTTGCAT
TATCCGGAGTGGCGACGGGGCGGTCTCGATGGCTAATGCGAGGAAGGGAC
GGATGGAGGGAAACACGAACGAGCATGTAAGCAGCAACAGCATCAGCAGC
AGCAACGATGGCGACATCAAGGCGACCAGCCACGGTTTCAACACCACGAG
AATGATAAACCACGACGCTGAGCCAGTCGCTGCTGCTGCTGCTGCTGGTG
CTGCAAACGTTACAGCGACAGAAGCATTAAACACGGTGAATGGAGCTGCA
GCAGTGATGGAGGCCGTGTCCCCAAGCAGCACACCTTTGCAAATGAAGGG
CCATTTGATTAGCATACTTTCGGGGGGGGACGTCGCCGTGGAGCGGACGC
GGCACCTGCTCACCTCCTGGCATTTGTGGAGTTTGGAAGGGGGAGGGCTT
AGCAACAGCAGCAGCAGTAGCAGCAGTGTCAGTAGCACTAGCAAATGTGG
CCCTGTGGGGGAGTCTACTGTGAAAGCAGAACCTGGACAGGCGAAGGAGG
ATTTGAGGGAACTGGCAAATTTGATTCAATTAACATTGCCTCCGTCAGTG
GCTGCGTGGGCGAAGAGCCGTGGGGCCATGGGTGGCACGGTGGCGGCGAC
TGAGGAACAGGAGCAGGTACAGAGTTTTTTGGATATGTGTGTGGATGATG
ATGGATCAGCGATTTGTAGTGCTGTTTACAGTGGGGGGAGGTTGCAGCTG
ACTTTGAATTCGAGGTTTGCTGCTATGTATATGACGCTGGAAGAGTTGGA
GACGACAGTGGCGAGGGATAGGTTGAGACCAGAGTTGGTGTGGCGGCAGT
TGTTGAGTCCTGAATGTTTCTCGGCATATGATGAGGCGCTATGTCAGGCG
TATTTTAAGGGGCAGAACTTGGGGGGAGAGGCATGTGAGATTATAAAGTG
CGTGGATAGGTTTGGGCTTGAAATGCCGTGTTTCATGCGACTGCGCATCT
TTGCGTCGTCACAAGGGGCCATTACGGCTTCGGTTATATTCTTGTTGCCG
TTGCAGTTATCCCAGTTAGTGGAGGCCTCGTGA

Synonyms

Publications