jgi.p|Nanoce1779_2|390679, mRNA_2927 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|390679
Unique Name	mRNA_2927
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2049
Alignment location	scaffold_7:267740..270587 -

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Properties


Property Name	Value
TranscriptId	390765
Track	FilteredModels2
ProteinId	390679

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:267740..270587 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|390679	gene_2927	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|390679	mRNA_2927-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2927	CDS_2927	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:267740..270587-
coding sequence from alignment at scaffold_7:267740..270587-

mRNA sequence

>mRNA_2927 ID=mRNA_2927|Name=jgi.p|Nanoce1779_2|390679|organism=Nannochloropsis oceanica|type=mRNA|length=2049bp
GTCGTTCTTCATGATCTTCATGATGCTTGCCATCTTTTTCGTTACATTTT
TGTTCATGCGGGTTTTTCCAAAGCGACGGTGGATGTTGTGGTGAAGATAT
GAGAGATGGCACGGAGCACTGATTTATTAGACCAGCCGGGACATCAAAGC
ACCCTCTCTTAAGAGGAGACAAAGAAAAAGAATGCAAGGCTTAGGATGAC
CAAGAACAAGTCTTACGCTACCGAATGCAAAGATAGTGATGATGCTGGCT
TAAGAACAATCCAATTGCAAGCTGCTGTGACCACTGCCAAAGAAATGTCG
CCGCCCGCTCCTGCGCCTCAGCCTACCACAGCTTCCCGCCCTTCCGTAAT
GACGCCTCCGCACCAGACCATGGCCAAGCTTTTGGCGGCCACGGTCGTTT
CACTTGGGGTACAAGTAGACTGGGCGGTGCAAGCTGCTTTGCTCATGCCA
TATTTGCTGGTGATCGGCGTGCCTTACAAGTACTATACCATCGTCTGTCT
TTGCGGCCCAATTTCTGGCTTGATCGCGCAGCCTTACATGGGCGTCTTTT
CCGACCACTGCCACTCCAGATTTGGCCGCCGCCGTCCCTTCATTTTTGGG
AGCGTCCTTTTGATAGTATTTGGATTTATGCTGATGGGCAACGCCACCCA
CCTTGGAGACTTGTTGCCTGGGGGAAAAGCGCAGCGCGGTGGTGATATGG
CCGCCGCCATTATTGGGCTTTGGATCATTGACATGGCCAACAACGGGCTG
GCCGGCCCTTGCCGAGCACTGGTTGCTGACATTGCGCCTGCCGAGCAACA
GCGTTTGGGCAATGCTTTGATGGCCGTGTGGTCTTCCATTGGTAGTGTTA
TTGGCTTCGTGTTGTGTGCCATTCCCTGGACGCGTTTCCTCCCCAACATT
GAGTCTCCTCATTGTCGGATGCAATGTGCGGACCTCCGCGTTGTTGCTGT
CATTTGTGCAATCTGCCTGTTGGTGACCTCCTTCATTACCATCTATACCA
CGCACGAAGAGCCCTTGATGGCGGACAGTGAGCACTCACCGCAAGGCGAA
AGGTCTCCCTTGGGCCTCATCCACAAAATTTTCAATACGCTTTTCAACAT
GCCTCCGGCCTTGGCCCGGGTGTGTGCATTCCAATTCTTCTCCTGGTGGT
CCTGGTTTCATCACACCCTTTTTATCGCTGTATGGGTGGGTAAGGTCGTA
AACCAAGGAAACGGCGGGGCGCCGGTTGGTTCTGAAGAGTACATTCGCTA
CGAGCGGGGCATCAAAGCTGCCTCTCTCGGCTTCGTGCTTTTTGCTGTCT
TGACAGGCCTCGTCTCCATGGCCTTACCCCGCATCCTCAAGCGTTTCAAG
ACCCGTCCTACCCTCGCCGTAGCCCAGATTTTTCTCGCCGGCTGCTATGG
TCTGACTTTTGCTGTCCCTCGACGCCAGGTCTACGGTGCCGCAGTGGTCA
TTGGCCTCTTTGCCTTGCCCTGGGCCGTCTTTCTCGTCGTGCCCTGGGCA
ATGATTGCCCAAATGGCCCCACCAGACAAACGAGGCCTCTACCTCGGTAG
CCTCAATATTTTTGCGTGTGTACCTCAAGTCCTTGTCGCACTGTCCGGGC
CTGTGCTTGTCAGGATTTTTGGAGAGGAAAGAGCGACGCAAGCAGCACTT
GGCTTTGGTGCGATTTTGGCCTTGGTCTCTTTATTGTTGGTCCCCAGGCT
CATCACCAAGTCCCACCCTCCTGTGGCTGCACCATTGGTGATTGAAAGGA
TGGAAATGGAGGGAGATGAGGCGGGAAGAGCACTGGCCGCCACACCCTCA
AGACGGTCTGAGGAAGAGGAGGAAAGGGCTGCGTTTGCGGGAGGCATGAC
CTCGGGGCTGCCGTATTTGGATGAGGCCAAGGAGGAGACGATTGAGGGGT
TAGTGGAGCAGCCGTTACTTCGCATTTATCGGGAGTTGTCTATGGGGTCA
TAGTCGGTGGATTCATCAAAATTTTGGGGGCAGCTTGGTTCTAGGGTGAT
GGCTTGGCAGGGAGACGGGTTGGATAAGAGAGCACGCGCGGTTAGGGCG

protein sequence of jgi.p|Nanoce1779_2|390679

>mRNA_2927-protein ID=mRNA_2927-protein|Name=jgi.p|Nanoce1779_2|390679|organism=Nannochloropsis oceanica|type=polypeptide|length=586bp
MTKNKSYATECKDSDDAGLRTIQLQAAVTTAKEMSPPAPAPQPTTASRPS
VMTPPHQTMAKLLAATVVSLGVQVDWAVQAALLMPYLLVIGVPYKYYTIV
CLCGPISGLIAQPYMGVFSDHCHSRFGRRRPFIFGSVLLIVFGFMLMGNA
THLGDLLPGGKAQRGGDMAAAIIGLWIIDMANNGLAGPCRALVADIAPAE
QQRLGNALMAVWSSIGSVIGFVLCAIPWTRFLPNIESPHCRMQCADLRVV
AVICAICLLVTSFITIYTTHEEPLMADSEHSPQGERSPLGLIHKIFNTLF
NMPPALARVCAFQFFSWWSWFHHTLFIAVWVGKVVNQGNGGAPVGSEEYI
RYERGIKAASLGFVLFAVLTGLVSMALPRILKRFKTRPTLAVAQIFLAGC
YGLTFAVPRRQVYGAAVVIGLFALPWAVFLVVPWAMIAQMAPPDKRGLYL
GSLNIFACVPQVLVALSGPVLVRIFGEERATQAALGFGAILALVSLLLVP
RLITKSHPPVAAPLVIERMEMEGDEAGRALAATPSRRSEEEEERAAFAGG
MTSGLPYLDEAKEETIEGLVEQPLLRIYRELSMGS*

mRNA from alignment at scaffold_7:267740..270587-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2927 ID=mRNA_2927|Name=jgi.p|Nanoce1779_2|390679|organism=Nannochloropsis oceanica|type=mRNA|length=2848bp|location=Sequence derived from alignment at scaffold_7:267740..270587- (Nannochloropsis oceanica)
GTCGTTCTTCATGATCTTCATGATGCTTGCCATCTTTTTCGTTACATTTT
TGTTCATGCGGGTTTTTCCAAAGCGACGGTGGATGTTGTGGTGAAGATAT
GAGAGATGGCACGGAGCACTGATTTATTAGACCAGCCGGGACATCAAAGC
ACCCTCTCTTAAGAGGAGACAAAGAAAAGTAAGAAAGAGACGCATGTACA
TATTCTCTTCCACGCCTCCAGCACGCAAGATGAGTGATCGCGCTTCGGTC
TGCCATGTTGATTATTCCTTATTGAGTTGAGGCAGACTCTCGTATACTTC
TCCCCCTTTCGGAGCAATCAGGGACAATTGATTAATTTTATCCTGACCAA
GCCCGTTTTCTAATCCTCAATGCGCTGCTCCTTGCCAGCCCACGATTGCC
CCAGTGTCTTCTCCCGTTGGCTGCCCGTCATGGAAAGTGGACGTATCTCT
GATGGGGTAAATTGACGAGACTGAGAGATAGACACAAGATAGAGGACTCG
GACGGCCGTATTTTGCCTGACGTCGATACCGGGCGCCAACCAAGAGGTTC
ACTCTGTCGGAAAGCAAAACGCCGCAGCAGCTCTTCTCCACGACAACTTC
AAGTTCCACCAGCTGCATCGCACGCTTAAAAATGCAGACAATGCTGGCAG
TATCGTCAAGGATATCGCAACGTGGGCAACAAAAATCGTCTATGATATTG
CCATGATCTTATATACGATCACGTTGCTTGTATTAATCAAGCAAAGATCA
TCTGATGATCCCCTTGGTTGCGGGGTACACGAGTCGGGGCATCGTCCGAG
TACGTGCCTTCTTAACATGAGTTTTGGGACACTTCCTGGCATGTGACCCC
TTTCGCTAACGTTTGACAAGATTTCATCCCCAAATCCTTCATTCGCATTG
GCTCGTACTTGTCTCTCGTCTTACAATGTCGATCGCCCCCCATCAATTCC
AATACCACCCCACTTTCGACACATCAGAGAATGCAAGGCTTAGGATGACC
AAGAACAAGTCTTACGCTACCGAATGCAAAGATAGTGATGATGCTGGCTT
AAGAACAATCCAATTGCAAGCTGCTGTGACCACTGCCAAAGAAATGTCGC
CGCCCGCTCCTGCGCCTCAGCCTACCACAGCTTCCCGCCCTTCCGTAATG
ACGCCTCCGCACCAGACCATGGCCAAGCTTTTGGCGGCCACGGTCGTTTC
ACTTGGGGTACAAGTAGACTGGGCGGTGCAAGCTGCTTTGCTCATGCCAT
ATTTGCTGGTGATCGGCGTGCCTTACAAGTACTATACCATCGTCTGTCTT
TGCGGCCCAATTTCTGGCTTGATCGCGCAGCCTTACATGGGCGTCTTTTC
CGACCACTGCCACTCCAGATTTGGCCGCCGCCGTCCCTTCATTTTTGGGA
GCGTCCTTTTGATAGTATTTGGATTTATGCTGATGGGCAACGCCACCCAC
CTTGGAGACTTGTTGCCTGGGGGAAAAGCGCAGCGCGGTGGTGATATGGC
CGCCGCCATTATTGGGCTTTGGATCATTGACATGGCCAACAACGGGCTGG
CCGGCCCTTGCCGAGCACTGGTTGCTGACATTGCGCCTGCCGAGCAACAG
CGTTTGGGCAATGCTTTGATGGCCGTGTGGTCTTCCATTGGTAGTGTTAT
TGGCTTCGTGTTGTGTGCCATTCCCTGGACGCGTTTCCTCCCCAACATTG
AGTCTCCTCATTGTCGGATGCAATGTGCGGACCTCCGCGTTGTTGCTGTC
ATTTGTGCAATCTGCCTGTTGGTGACCTCCTTCATTACCATCTATACCAC
GCACGAAGAGCCCTTGATGGCGGACAGTGAGCACTCACCGCAAGGCGAAA
GGTCTCCCTTGGGCCTCATCCACAAAATTTTCAATACGCTTTTCAACATG
CCTCCGGCCTTGGCCCGGGTGTGTGCATTCCAATTCTTCTCCTGGTGGTC
CTGGTTTCATCACACCCTTTTTATCGCTGTATGGGTGGGTAAGGTCGTAA
ACCAAGGAAACGGCGGGGCGCCGGTTGGTTCTGAAGAGTACATTCGCTAC
GAGCGGGGCATCAAAGCTGCCTCTCTCGGCTTCGTGCTTTTTGCTGTCTT
GACAGGCCTCGTCTCCATGGCCTTACCCCGCATCCTCAAGCGTTTCAAGA
CCCGTCCTACCCTCGCCGTAGCCCAGATTTTTCTCGCCGGCTGCTATGGT
CTGACTTTTGCTGTCCCTCGACGCCAGGTCTACGGTGCCGCAGTGGTCAT
TGGCCTCTTTGCCTTGCCCTGGGCCGTCTTTCTCGTCGTGCCCTGGGCAA
TGATTGCCCAAATGGCCCCACCAGACAAACGAGGCCTCTACCTCGGTAGC
CTCAATATTTTTGCGTGTGTACCTCAAGTCCTTGTCGCACTGTCCGGGCC
TGTGCTTGTCAGGATTTTTGGAGAGGAAAGAGCGACGCAAGCAGCACTTG
GCTTTGGTGCGATTTTGGCCTTGGTCTCTTTATTGTTGGTCCCCAGGCTC
ATCACCAAGTCCCACCCTCCTGTGGCTGCACCATTGGTGATTGAAAGGAT
GGAAATGGAGGGAGATGAGGCGGGAAGAGCACTGGCCGCCACACCCTCAA
GACGGTCTGAGGAAGAGGAGGAAAGGGCTGCGTTTGCGGGAGGCATGACC
TCGGGGCTGCCGTATTTGGATGAGGCCAAGGAGGAGACGATTGAGGGGTT
AGTGGAGCAGCCGTTACTTCGCATTTATCGGGAGTTGTCTATGGGGTCAT
AGTCGGTGGATTCATCAAAATTTTGGGGGCAGCTTGGTTCTAGGGTGATG
GCTTGGCAGGGAGACGGGTTGGATAAGAGAGCACGCGCGGTTAGGGCG

Coding sequence (CDS) from alignment at scaffold_7:267740..270587-

>mRNA_2927 ID=mRNA_2927|Name=jgi.p|Nanoce1779_2|390679|organism=Nannochloropsis oceanica|type=CDS|length=1758bp|location=Sequence derived from alignment at scaffold_7:267740..270587- (Nannochloropsis oceanica)
ATGACCAAGAACAAGTCTTACGCTACCGAATGCAAAGATAGTGATGATGC
TGGCTTAAGAACAATCCAATTGCAAGCTGCTGTGACCACTGCCAAAGAAA
TGTCGCCGCCCGCTCCTGCGCCTCAGCCTACCACAGCTTCCCGCCCTTCC
GTAATGACGCCTCCGCACCAGACCATGGCCAAGCTTTTGGCGGCCACGGT
CGTTTCACTTGGGGTACAAGTAGACTGGGCGGTGCAAGCTGCTTTGCTCA
TGCCATATTTGCTGGTGATCGGCGTGCCTTACAAGTACTATACCATCGTC
TGTCTTTGCGGCCCAATTTCTGGCTTGATCGCGCAGCCTTACATGGGCGT
CTTTTCCGACCACTGCCACTCCAGATTTGGCCGCCGCCGTCCCTTCATTT
TTGGGAGCGTCCTTTTGATAGTATTTGGATTTATGCTGATGGGCAACGCC
ACCCACCTTGGAGACTTGTTGCCTGGGGGAAAAGCGCAGCGCGGTGGTGA
TATGGCCGCCGCCATTATTGGGCTTTGGATCATTGACATGGCCAACAACG
GGCTGGCCGGCCCTTGCCGAGCACTGGTTGCTGACATTGCGCCTGCCGAG
CAACAGCGTTTGGGCAATGCTTTGATGGCCGTGTGGTCTTCCATTGGTAG
TGTTATTGGCTTCGTGTTGTGTGCCATTCCCTGGACGCGTTTCCTCCCCA
ACATTGAGTCTCCTCATTGTCGGATGCAATGTGCGGACCTCCGCGTTGTT
GCTGTCATTTGTGCAATCTGCCTGTTGGTGACCTCCTTCATTACCATCTA
TACCACGCACGAAGAGCCCTTGATGGCGGACAGTGAGCACTCACCGCAAG
GCGAAAGGTCTCCCTTGGGCCTCATCCACAAAATTTTCAATACGCTTTTC
AACATGCCTCCGGCCTTGGCCCGGGTGTGTGCATTCCAATTCTTCTCCTG
GTGGTCCTGGTTTCATCACACCCTTTTTATCGCTGTATGGGTGGGTAAGG
TCGTAAACCAAGGAAACGGCGGGGCGCCGGTTGGTTCTGAAGAGTACATT
CGCTACGAGCGGGGCATCAAAGCTGCCTCTCTCGGCTTCGTGCTTTTTGC
TGTCTTGACAGGCCTCGTCTCCATGGCCTTACCCCGCATCCTCAAGCGTT
TCAAGACCCGTCCTACCCTCGCCGTAGCCCAGATTTTTCTCGCCGGCTGC
TATGGTCTGACTTTTGCTGTCCCTCGACGCCAGGTCTACGGTGCCGCAGT
GGTCATTGGCCTCTTTGCCTTGCCCTGGGCCGTCTTTCTCGTCGTGCCCT
GGGCAATGATTGCCCAAATGGCCCCACCAGACAAACGAGGCCTCTACCTC
GGTAGCCTCAATATTTTTGCGTGTGTACCTCAAGTCCTTGTCGCACTGTC
CGGGCCTGTGCTTGTCAGGATTTTTGGAGAGGAAAGAGCGACGCAAGCAG
CACTTGGCTTTGGTGCGATTTTGGCCTTGGTCTCTTTATTGTTGGTCCCC
AGGCTCATCACCAAGTCCCACCCTCCTGTGGCTGCACCATTGGTGATTGA
AAGGATGGAAATGGAGGGAGATGAGGCGGGAAGAGCACTGGCCGCCACAC
CCTCAAGACGGTCTGAGGAAGAGGAGGAAAGGGCTGCGTTTGCGGGAGGC
ATGACCTCGGGGCTGCCGTATTTGGATGAGGCCAAGGAGGAGACGATTGA
GGGGTTAGTGGAGCAGCCGTTACTTCGCATTTATCGGGAGTTGTCTATGG
GGTCATAG

Synonyms

Publications