jgi.p|Nanoce1779_2|583839, mRNA_2926 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|583839
Unique Name	mRNA_2926
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3767
Alignment location	scaffold_7:266386..270342 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	583925
Track	FilteredModels2
ProteinId	583839

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:266386..270342 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583839	gene_2926	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583839	mRNA_2926-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2926	CDS_2926	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:266386..270342+
coding sequence from alignment at scaffold_7:266386..270342+

mRNA sequence

>mRNA_2926 ID=mRNA_2926|Name=jgi.p|Nanoce1779_2|583839|organism=Nannochloropsis oceanica|type=mRNA|length=3767bp
AGCCATGCTGCGCCTTCCAAGACCCATCCTCTTGATCGTCCTTCTCTTTT
CCACCTCGACCCATGCATTCCGTCACACAACCCTCAAGATGATGTCCTCC
AGCACGGACATGTCCCCATCGGCCAGCACCAGGACGCCAACCGTACTCCG
ACAACCTCTGTCGTATCGCGTCGCGGACAAAGTCGTCGGCACGCTCTTTG
GAATCGACCCCATTTTCAACCTGTTGGCCAAGAAGGCCCGGGAATCGATC
ATGGTCCGGGGGGAGAAGATTGGTGTGTCGTGGGTGGAGAGGGTGGACGG
CCTAAAGCAACACATGGACGAGCTCGAGAAGCAGTACGAGGAAATCAACC
GGCCCCTCGTTGTGACCCCCGAATACTACAAGAAGCCTTTCCATGCATAT
AAGGAGGGAAATCTCGGATGGGCTCCAGCCATTGAATTCGAGGCTGCTTC
CTTGAGTGTCCACAGCCCTACCTTCACCACTGGCCCAACCGAGCTAGAAG
AAGACGGCGACGCCAAGCTCCGCGGCAATTTCCACGCCCGTATGAGGGAA
ATGTTGTCGACTTACACCTTCACTCCTTCTCGAATAATCGACGTGGGTTG
CGCCGCTGGGATGAGCACGCTGCGTCTGCAAGCCTCCTTTCCTGAGGCCG
AGGTAATGGGCATCGACCTGTCGCCCTACATGCTGGCCGTTGCAAAATAC
AACCTCAACTCCCGGCCCGAGCTCGCGCAGCTCAAAAGCGAAAGGCGTGT
AGATTACATGCATGCCGCAGGGGAGGACACGGGACTGCCTGATGCGTCGG
TAGACTTGGTCTCAATTTGCCTGGTTAATCACGAGCTACCAAATGAGGCC
GCACGTAAGGTCTTCCGAGAGGCTTACCGCTTGCTTCGCCCCGGCGGGGC
CTTGGCGTTTATGGATATGGATCCGACGGCAATGGCTTTCCAGAGAATTG
TGAATAATCCGATGCTATTCGCCCTGTTCAAGAGCACGGAACCCTGGTTG
AAGGAGTATGTAGTGCTGGACTTGCCGAGCGAGCTGCAGGCAGCAGGGTT
TAGCCGCATGGATGTTAAGGGGAATTCACCGCGGCATCGAACGGTGGTGG
CGTTTAAGTAAAAACAAGAAAGAGTTTGGAGATACACGCGTTCGTTTAAG
TGGGGATCAGGAGGAGAGGACAAGACACATTCCTCACAACATTCTGTTTC
TTGACAGAGAGCCATCACCCTAGAACCAAGCTGCCCCCAAAATTTTGATG
AATCCACCGACTATGACCCCATAGACAACTCCCGATAAATGCGAAGTAAC
GGCTGCTCCACTAACCCCTCAATCGTCTCCTCCTTGGCCTCATCCAAATA
CGGCAGCCCCGAGGTCATGCCTCCCGCAAACGCAGCCCTTTCCTCCTCTT
CCTCAGACCGTCTTGAGGGTGTGGCGGCCAGTGCTCTTCCCGCCTCATCT
CCCTCCATTTCCATCCTTTCAATCACCAATGGTGCAGCCACAGGAGGGTG
GGACTTGGTGATGAGCCTGGGGACCAACAATAAAGAGACCAAGGCCAAAA
TCGCACCAAAGCCAAGTGCTGCTTGCGTCGCTCTTTCCTCTCCAAAAATC
CTGACAAGCACAGGCCCGGACAGTGCGACAAGGACTTGAGGTACACACGC
AAAAATATTGAGGCTACCGAGGTAGAGGCCTCGTTTGTCTGGTGGGGCCA
TTTGGGCAATCATTGCCCAGGGCACGACGAGAAAGACGGCCCAGGGCAAG
GCAAAGAGGCCAATGACCACTGCGGCACCGTAGACCTGGCGTCGAGGGAC
AGCAAAAGTCAGACCATAGCAGCCGGCGAGAAAAATCTGGGCTACGGCGA
GGGTAGGACGGGTCTTGAAACGCTTGAGGATGCGGGGTAAGGCCATGGAG
ACGAGGCCTGTCAAGACAGCAAAAAGCACGAAGCCGAGAGAGGCAGCTTT
GATGCCCCGCTCGTAGCGAATGTACTCTTCAGAACCAACCGGCGCCCCGC
CGTTTCCTTGGTTTACGACCTTACCCACCCATACAGCGATAAAAAGGGTG
TGATGAAACCAGGACCACCAGGAGAAGAATTGGAATGCACACACCCGGGC
CAAGGCCGGAGGCATGTTGAAAAGCGTATTGAAAATTTTGTGGATGAGGC
CCAAGGGAGACCTTTCGCCTTGCGGTGAGTGCTCACTGTCCGCCATCAAG
GGCTCTTCGTGCGTGGTATAGATGGTAATGAAGGAGGTCACCAACAGGCA
GATTGCACAAATGACAGCAACAACGCGGAGGTCCGCACATTGCATCCGAC
AATGAGGAGACTCAATGTTGGGGAGGAAACGCGTCCAGGGAATGGCACAC
AACACGAAGCCAATAACACTACCAATGGAAGACCACACGGCCATCAAAGC
ATTGCCCAAACGCTGTTGCTCGGCAGGCGCAATGTCAGCAACCAGTGCTC
GGCAAGGGCCGGCCAGCCCGTTGTTGGCCATGTCAATGATCCAAAGCCCA
ATAATGGCGGCGGCCATATCACCACCGCGCTGCGCTTTTCCCCCAGGCAA
CAAGTCTCCAAGGTGGGTGGCGTTGCCCATCAGCATAAATCCAAATACTA
TCAAAAGGACGCTCCCAAAAATGAAGGGACGGCGGCGGCCAAATCTGGAG
TGGCAGTGGTCGGAAAAGACGCCCATGTAAGGCTGCGCGATCAAGCCAGA
AATTGGGCCGCAAAGACAGACGATGGTATAGTACTTGTAAGGCACGCCGA
TCACCAGCAAATATGGCATGAGCAAAGCAGCTTGCACCGCCCAGTCTACT
TGTACCCCAAGTGAAACGACCGTGGCCGCCAAAAGCTTGGCCATGGTCTG
GTGCGGAGGCGTCATTACGGAAGGGCGGGAAGCTGTGGTAGGCTGAGGCG
CAGGAGCGGGCGGCGACATTTCTTTGGCAGTGGTCACAGCAGCTTGCAAT
TGGATTGTTCTTAAGCCAGCATCATCACTATCTTTGCATTCGGTAGCGTA
AGACTTGTTCTTGGTCATCCTAAGCCTTGCATTCTCTGATGTGTCGAAAG
TGGGGTGGTATTGGAATTGATGGGGGGCGATCGACATTGTAAGACGAGAG
ACAAGTACGAGCCAATGCGAATGAAGGATTTGGGGATGAAATCTTGTCAA
ACGTTAGCGAAAGGGGTCACATGCCAGGAAGTGTCCCAAAACTCATGTTA
AGAAGGCACGTACTCGGACGATGCCCCGACTCGTGTACCCCGCAACCAAG
GGGATCATCAGATGATCTTTGCTTGATTAATACAAGCAACGTGATCGTAT
ATAAGATCATGGCAATATCATAGACGATTTTTGTTGCCCACGTTGCGATA
TCCTTGACGATACTGCCAGCATTGTCTGCATTTTTAAGCGTGCGATGCAG
CTGGTGGAACTTGAAGTTGTCGTGGAGAAGAGCTGCTGCGGCGTTTTGCT
TTCCGACAGAGTGAACCTCTTGGTTGGCGCCCGGTATCGACGTCAGGCAA
AATACGGCCGTCCGAGTCCTCTATCTTGTGTCTATCTCTCAGTCTCGTCA
ATTTACCCCATCAGAGATACGTCCACTTTCCATGACGGGCAGCCAACGGG
AGAAGACACTGGGGCAATCGTGGGCTGGCAAGGAGCAGCGCATTGAGGAT
TAGAAAACGGGCTTGGTCAGGATAAAATTAATCAATTGTCCCTGATTGCT
CCGAAAGGGGGAGAAGTATACGAGAGTCTGCCTCAACTCAATAAGGAATA
ATCAACATGGCAGACCG

protein sequence of jgi.p|Nanoce1779_2|583839

>mRNA_2926-protein ID=mRNA_2926-protein|Name=jgi.p|Nanoce1779_2|583839|organism=Nannochloropsis oceanica|type=polypeptide|length=369bp
MLRLPRPILLIVLLFSTSTHAFRHTTLKMMSSSTDMSPSASTRTPTVLRQ
PLSYRVADKVVGTLFGIDPIFNLLAKKARESIMVRGEKIGVSWVERVDGL
KQHMDELEKQYEEINRPLVVTPEYYKKPFHAYKEGNLGWAPAIEFEAASL
SVHSPTFTTGPTELEEDGDAKLRGNFHARMREMLSTYTFTPSRIIDVGCA
AGMSTLRLQASFPEAEVMGIDLSPYMLAVAKYNLNSRPELAQLKSERRVD
YMHAAGEDTGLPDASVDLVSICLVNHELPNEAARKVFREAYRLLRPGGAL
AFMDMDPTAMAFQRIVNNPMLFALFKSTEPWLKEYVVLDLPSELQAAGFS
RMDVKGNSPRHRTVVAFK*

mRNA from alignment at scaffold_7:266386..270342+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2926 ID=mRNA_2926|Name=jgi.p|Nanoce1779_2|583839|organism=Nannochloropsis oceanica|type=mRNA|length=3957bp|location=Sequence derived from alignment at scaffold_7:266386..270342+ (Nannochloropsis oceanica)
AGCCATGCTGCGCCTTCCAAGACCCATCCTCTTGATCGTCCTTCTCTTTT
CCACCTCGACCCATGCATTCCGTCACACAACCCTCAAGATGATGTCCTCC
AGCACGGACATGTCCCCATCGGCCAGCACCAGGACGCCAACCGTACTCCG
ACAACCTCTGTCGTATCGCGTCGCGGACAAAGTCGTCGGCACGCTCTTTG
GAATCGACCCCATTTTCAACCTGTTGGCCAAGAAGGCCCGGGAATCGATC
ATGGTCCGGGGGGAGAAGATTGGTGTGTCGTGGGTGGAGAGGGTGGACGG
CCTAAAGCAACACATGGACGAGCTCGAGAAGCAGTACGAGGAAATCAACC
GGCCCCTCGTTGTGACCCCCGAATACTACAAGAAGCCTTTCCATGCATAT
AAGGAGGGAAATCTCGGATGGGCTCCAGCCATTGAATTCGAGGCTGCTTC
CTTGAGTGTCCACAGCCCTACCTTCACCACTGGCCCAACCGAGCTAGAAG
AAGACGGCGACGCCAAGCTCCGCGGCAATTTCCACGCCCGTATGAGGGAA
ATGTTGTCGACTTACACCTTCACTCCTTCTCGAATAATCGACGTGGGTTG
CGCCGCTGGGATGAGCACGCTGCGTCTGCAAGCCTCCTTTCCTGAGGCCG
AGGTAATGGGCATCGACCTGTCGCCCTACATGCTGGCCGTTGCAAAATAC
AACCTCAACTCCCGGCCCGAGCTCGCGCAGCTCAAAAGCGAAAGGCGTGT
AGATTACATGCATGCCGCAGGGGAGGACACGGGACTGCCTGATGCGTCGG
TAGACTTGGTCTCAATTTGCCTGGTTAATCACGAGCTACCAAATGAGGCC
GCACGTAAGGTCTTCCGAGAGGCTTACCGCTTGCTTCGCCCCGGCGGGGC
CTTGGCGTTTATGGATATGGATCCGACGGCAATGGCTTTCCAGAGAATTG
TGAATAATCCGATGCTATTCGCCCTGTTCAAGAGCACGGAACCCTGGTTG
AAGGAGTATGTAGTGCTGGACTTGCCGAGCGAGCTGCAGGCAGCAGGGTT
TAGCCGCATGGATGTTAAGGGGAATTCACCGCGGCATCGAACGGTGGTGG
CGTTTAAGTAAAAACAAGAAAGAGTTTGGAGATACACGCGTTCGTTTAAG
TGGGGATCAGGAGGAGAGGACAAGACACATTCCTCACAACATTCTGTTTC
TTGACAGAGAGGTATGTGTTAATGCGCGCGCCGAAATTCAGTTCTAACCT
TTCCCTCCACCAAAAAACATGTCTATTTTTTATTTTGTACCAATAATTTC
GCGGACTTATCCGCGATTGAAAAGAATGAAAAACAAAGAACGCAGGCCAC
TTAACGCCCTAACCGCGCGTGCTCTCTTATCCAACCCGTCTCCCTGCCAA
GCCATCACCCTAGAACCAAGCTGCCCCCAAAATTTTGATGAATCCACCGA
CTATGACCCCATAGACAACTCCCGATAAATGCGAAGTAACGGCTGCTCCA
CTAACCCCTCAATCGTCTCCTCCTTGGCCTCATCCAAATACGGCAGCCCC
GAGGTCATGCCTCCCGCAAACGCAGCCCTTTCCTCCTCTTCCTCAGACCG
TCTTGAGGGTGTGGCGGCCAGTGCTCTTCCCGCCTCATCTCCCTCCATTT
CCATCCTTTCAATCACCAATGGTGCAGCCACAGGAGGGTGGGACTTGGTG
ATGAGCCTGGGGACCAACAATAAAGAGACCAAGGCCAAAATCGCACCAAA
GCCAAGTGCTGCTTGCGTCGCTCTTTCCTCTCCAAAAATCCTGACAAGCA
CAGGCCCGGACAGTGCGACAAGGACTTGAGGTACACACGCAAAAATATTG
AGGCTACCGAGGTAGAGGCCTCGTTTGTCTGGTGGGGCCATTTGGGCAAT
CATTGCCCAGGGCACGACGAGAAAGACGGCCCAGGGCAAGGCAAAGAGGC
CAATGACCACTGCGGCACCGTAGACCTGGCGTCGAGGGACAGCAAAAGTC
AGACCATAGCAGCCGGCGAGAAAAATCTGGGCTACGGCGAGGGTAGGACG
GGTCTTGAAACGCTTGAGGATGCGGGGTAAGGCCATGGAGACGAGGCCTG
TCAAGACAGCAAAAAGCACGAAGCCGAGAGAGGCAGCTTTGATGCCCCGC
TCGTAGCGAATGTACTCTTCAGAACCAACCGGCGCCCCGCCGTTTCCTTG
GTTTACGACCTTACCCACCCATACAGCGATAAAAAGGGTGTGATGAAACC
AGGACCACCAGGAGAAGAATTGGAATGCACACACCCGGGCCAAGGCCGGA
GGCATGTTGAAAAGCGTATTGAAAATTTTGTGGATGAGGCCCAAGGGAGA
CCTTTCGCCTTGCGGTGAGTGCTCACTGTCCGCCATCAAGGGCTCTTCGT
GCGTGGTATAGATGGTAATGAAGGAGGTCACCAACAGGCAGATTGCACAA
ATGACAGCAACAACGCGGAGGTCCGCACATTGCATCCGACAATGAGGAGA
CTCAATGTTGGGGAGGAAACGCGTCCAGGGAATGGCACACAACACGAAGC
CAATAACACTACCAATGGAAGACCACACGGCCATCAAAGCATTGCCCAAA
CGCTGTTGCTCGGCAGGCGCAATGTCAGCAACCAGTGCTCGGCAAGGGCC
GGCCAGCCCGTTGTTGGCCATGTCAATGATCCAAAGCCCAATAATGGCGG
CGGCCATATCACCACCGCGCTGCGCTTTTCCCCCAGGCAACAAGTCTCCA
AGGTGGGTGGCGTTGCCCATCAGCATAAATCCAAATACTATCAAAAGGAC
GCTCCCAAAAATGAAGGGACGGCGGCGGCCAAATCTGGAGTGGCAGTGGT
CGGAAAAGACGCCCATGTAAGGCTGCGCGATCAAGCCAGAAATTGGGCCG
CAAAGACAGACGATGGTATAGTACTTGTAAGGCACGCCGATCACCAGCAA
ATATGGCATGAGCAAAGCAGCTTGCACCGCCCAGTCTACTTGTACCCCAA
GTGAAACGACCGTGGCCGCCAAAAGCTTGGCCATGGTCTGGTGCGGAGGC
GTCATTACGGAAGGGCGGGAAGCTGTGGTAGGCTGAGGCGCAGGAGCGGG
CGGCGACATTTCTTTGGCAGTGGTCACAGCAGCTTGCAATTGGATTGTTC
TTAAGCCAGCATCATCACTATCTTTGCATTCGGTAGCGTAAGACTTGTTC
TTGGTCATCCTAAGCCTTGCATTCTCTGATGTGTCGAAAGTGGGGTGGTA
TTGGAATTGATGGGGGGCGATCGACATTGTAAGACGAGAGACAAGTACGA
GCCAATGCGAATGAAGGATTTGGGGATGAAATCTTGTCAAACGTTAGCGA
AAGGGGTCACATGCCAGGAAGTGTCCCAAAACTCATGTTAAGAAGGCACG
TACTCGGACGATGCCCCGACTCGTGTACCCCGCAACCAAGGGGATCATCA
GATGATCTTTGCTTGATTAATACAAGCAACGTGATCGTATATAAGATCAT
GGCAATATCATAGACGATTTTTGTTGCCCACGTTGCGATATCCTTGACGA
TACTGCCAGCATTGTCTGCATTTTTAAGCGTGCGATGCAGCTGGTGGAAC
TTGAAGTTGTCGTGGAGAAGAGCTGCTGCGGCGTTTTGCTTTCCGACAGA
GTGAACCTCTTGGTTGGCGCCCGGTATCGACGTCAGGCAAAATACGGCCG
TCCGAGTCCTCTATCTTGTGTCTATCTCTCAGTCTCGTCAATTTACCCCA
TCAGAGATACGTCCACTTTCCATGACGGGCAGCCAACGGGAGAAGACACT
GGGGCAATCGTGGGCTGGCAAGGAGCAGCGCATTGAGGATTAGAAAACGG
GCTTGGTCAGGATAAAATTAATCAATTGTCCCTGATTGCTCCGAAAGGGG
GAGAAGTATACGAGAGTCTGCCTCAACTCAATAAGGAATAATCAACATGG
CAGACCG

Coding sequence (CDS) from alignment at scaffold_7:266386..270342+

>mRNA_2926 ID=mRNA_2926|Name=jgi.p|Nanoce1779_2|583839|organism=Nannochloropsis oceanica|type=CDS|length=1107bp|location=Sequence derived from alignment at scaffold_7:266386..270342+ (Nannochloropsis oceanica)
ATGCTGCGCCTTCCAAGACCCATCCTCTTGATCGTCCTTCTCTTTTCCAC
CTCGACCCATGCATTCCGTCACACAACCCTCAAGATGATGTCCTCCAGCA
CGGACATGTCCCCATCGGCCAGCACCAGGACGCCAACCGTACTCCGACAA
CCTCTGTCGTATCGCGTCGCGGACAAAGTCGTCGGCACGCTCTTTGGAAT
CGACCCCATTTTCAACCTGTTGGCCAAGAAGGCCCGGGAATCGATCATGG
TCCGGGGGGAGAAGATTGGTGTGTCGTGGGTGGAGAGGGTGGACGGCCTA
AAGCAACACATGGACGAGCTCGAGAAGCAGTACGAGGAAATCAACCGGCC
CCTCGTTGTGACCCCCGAATACTACAAGAAGCCTTTCCATGCATATAAGG
AGGGAAATCTCGGATGGGCTCCAGCCATTGAATTCGAGGCTGCTTCCTTG
AGTGTCCACAGCCCTACCTTCACCACTGGCCCAACCGAGCTAGAAGAAGA
CGGCGACGCCAAGCTCCGCGGCAATTTCCACGCCCGTATGAGGGAAATGT
TGTCGACTTACACCTTCACTCCTTCTCGAATAATCGACGTGGGTTGCGCC
GCTGGGATGAGCACGCTGCGTCTGCAAGCCTCCTTTCCTGAGGCCGAGGT
AATGGGCATCGACCTGTCGCCCTACATGCTGGCCGTTGCAAAATACAACC
TCAACTCCCGGCCCGAGCTCGCGCAGCTCAAAAGCGAAAGGCGTGTAGAT
TACATGCATGCCGCAGGGGAGGACACGGGACTGCCTGATGCGTCGGTAGA
CTTGGTCTCAATTTGCCTGGTTAATCACGAGCTACCAAATGAGGCCGCAC
GTAAGGTCTTCCGAGAGGCTTACCGCTTGCTTCGCCCCGGCGGGGCCTTG
GCGTTTATGGATATGGATCCGACGGCAATGGCTTTCCAGAGAATTGTGAA
TAATCCGATGCTATTCGCCCTGTTCAAGAGCACGGAACCCTGGTTGAAGG
AGTATGTAGTGCTGGACTTGCCGAGCGAGCTGCAGGCAGCAGGGTTTAGC
CGCATGGATGTTAAGGGGAATTCACCGCGGCATCGAACGGTGGTGGCGTT
TAAGTAA

Synonyms

Publications