jgi.p|Nanoce1779_2|583835, mRNA_2925 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583835
Unique NamemRNA_2925
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1023
Alignment locationscaffold_7:264945..265967 -

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Properties
Property NameValue
TranscriptId583921
TrackFilteredModels2
ProteinId583835
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:264945..265967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583835gene_2925Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583835mRNA_2925-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2925CDS_2925Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2925 ID=mRNA_2925|Name=jgi.p|Nanoce1779_2|583835|organism=Nannochloropsis oceanica|type=mRNA|length=1023bp
CAGCTCCTCCCCAACCCAGCCTACGTCTTCCCCACCCTCACACAACCACC
ATGAGCACCCTCCGAAGACAAACGCGGCTTCGGAAGGAGTACTTATATCG
GAAGTCTTTGGAAGGCAAGGAGAAGTCGGCGTATGAACGCAAGCGCCTGA
TCCGTACGGCCCTACAAGAAGGCAAGCCCATTCCCACGGAGCTGCGGGGC
GAGGAGGCCAGCTTGCGGCATGAGGTCGGGTTGGAGGACGAGGCAACCTC
CACACCTCGGTCGCACGTGGATGATGAGTATGGTTTGGCTGGCACGCGGG
ACCCAAAAGTTTGTGTGACCACGTCGCGTGATCCGTCCTCGCGGCTGAAG
CAGTTTATGAAGGAAGTCAAGCTCATCTTTCCCAATGCCCAGGCAGTCAA
CAGAGGCAATACCAAGGTCCCCGAGCTGGTGGAAGCTTGTCGCACGCATG
ACTTTACGGATATTGTTATGGTTCAAGAAACGAGGGGGCAGCCCGATGGG
TTGCTGGTGTGTCACTTGCCTTTGGGTCCCACTGCTTATTTCACCTTGTC
GAATGTGGTGATGCGGCATGATATTGAAGACCGAGCTACGGTTTCGGAGG
CCTACCCTCACCTAATCTTTGAGGGATTTACGTCTAGCCTAGGGCAGAGG
GTGGCAGACATTTTGAAGTATACGTTTCCGGCGCCAAAGGCCGAGACGAA
GCGGGTGGTGACGTTTGCGAATGAGGATGACCAGATCGTGTTTCGGCATC
ACACTTTTGAGAAGGCTCCGGGAGTGAAGGGGGAGGTGACTCTCAAGGAG
GTGGGGCCTCGGTTTGATCTGACCTTGTTTCAAGTCAAATTGGGAACGTT
GGAGCAGGCGGATGCGGAAACAGAGTATGTTTTCAGGCCGTACATGAACA
CAGCCAAGAAGAGGAGGATGCTTTAATTACATTTTTTTGAGGAAGGGTGG
GGGGGGAGAAGAGAGGAGGTAAAAGGAAAGCATGTACAGCACGGTGAAAT
AGAAGAAAATGGCGAGACATAGC
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protein sequence of jgi.p|Nanoce1779_2|583835

>mRNA_2925-protein ID=mRNA_2925-protein|Name=jgi.p|Nanoce1779_2|583835|organism=Nannochloropsis oceanica|type=polypeptide|length=292bp
MSTLRRQTRLRKEYLYRKSLEGKEKSAYERKRLIRTALQEGKPIPTELRG
EEASLRHEVGLEDEATSTPRSHVDDEYGLAGTRDPKVCVTTSRDPSSRLK
QFMKEVKLIFPNAQAVNRGNTKVPELVEACRTHDFTDIVMVQETRGQPDG
LLVCHLPLGPTAYFTLSNVVMRHDIEDRATVSEAYPHLIFEGFTSSLGQR
VADILKYTFPAPKAETKRVVTFANEDDQIVFRHHTFEKAPGVKGEVTLKE
VGPRFDLTLFQVKLGTLEQADAETEYVFRPYMNTAKKRRML*
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mRNA from alignment at scaffold_7:264945..265967-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2925 ID=mRNA_2925|Name=jgi.p|Nanoce1779_2|583835|organism=Nannochloropsis oceanica|type=mRNA|length=1023bp|location=Sequence derived from alignment at scaffold_7:264945..265967- (Nannochloropsis oceanica)
CAGCTCCTCCCCAACCCAGCCTACGTCTTCCCCACCCTCACACAACCACC
ATGAGCACCCTCCGAAGACAAACGCGGCTTCGGAAGGAGTACTTATATCG
GAAGTCTTTGGAAGGCAAGGAGAAGTCGGCGTATGAACGCAAGCGCCTGA
TCCGTACGGCCCTACAAGAAGGCAAGCCCATTCCCACGGAGCTGCGGGGC
GAGGAGGCCAGCTTGCGGCATGAGGTCGGGTTGGAGGACGAGGCAACCTC
CACACCTCGGTCGCACGTGGATGATGAGTATGGTTTGGCTGGCACGCGGG
ACCCAAAAGTTTGTGTGACCACGTCGCGTGATCCGTCCTCGCGGCTGAAG
CAGTTTATGAAGGAAGTCAAGCTCATCTTTCCCAATGCCCAGGCAGTCAA
CAGAGGCAATACCAAGGTCCCCGAGCTGGTGGAAGCTTGTCGCACGCATG
ACTTTACGGATATTGTTATGGTTCAAGAAACGAGGGGGCAGCCCGATGGG
TTGCTGGTGTGTCACTTGCCTTTGGGTCCCACTGCTTATTTCACCTTGTC
GAATGTGGTGATGCGGCATGATATTGAAGACCGAGCTACGGTTTCGGAGG
CCTACCCTCACCTAATCTTTGAGGGATTTACGTCTAGCCTAGGGCAGAGG
GTGGCAGACATTTTGAAGTATACGTTTCCGGCGCCAAAGGCCGAGACGAA
GCGGGTGGTGACGTTTGCGAATGAGGATGACCAGATCGTGTTTCGGCATC
ACACTTTTGAGAAGGCTCCGGGAGTGAAGGGGGAGGTGACTCTCAAGGAG
GTGGGGCCTCGGTTTGATCTGACCTTGTTTCAAGTCAAATTGGGAACGTT
GGAGCAGGCGGATGCGGAAACAGAGTATGTTTTCAGGCCGTACATGAACA
CAGCCAAGAAGAGGAGGATGCTTTAATTACATTTTTTTGAGGAAGGGTGG
GGGGGGAGAAGAGAGGAGGTAAAAGGAAAGCATGTACAGCACGGTGAAAT
AGAAGAAAATGGCGAGACATAGC
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Coding sequence (CDS) from alignment at scaffold_7:264945..265967-

>mRNA_2925 ID=mRNA_2925|Name=jgi.p|Nanoce1779_2|583835|organism=Nannochloropsis oceanica|type=CDS|length=876bp|location=Sequence derived from alignment at scaffold_7:264945..265967- (Nannochloropsis oceanica)
ATGAGCACCCTCCGAAGACAAACGCGGCTTCGGAAGGAGTACTTATATCG
GAAGTCTTTGGAAGGCAAGGAGAAGTCGGCGTATGAACGCAAGCGCCTGA
TCCGTACGGCCCTACAAGAAGGCAAGCCCATTCCCACGGAGCTGCGGGGC
GAGGAGGCCAGCTTGCGGCATGAGGTCGGGTTGGAGGACGAGGCAACCTC
CACACCTCGGTCGCACGTGGATGATGAGTATGGTTTGGCTGGCACGCGGG
ACCCAAAAGTTTGTGTGACCACGTCGCGTGATCCGTCCTCGCGGCTGAAG
CAGTTTATGAAGGAAGTCAAGCTCATCTTTCCCAATGCCCAGGCAGTCAA
CAGAGGCAATACCAAGGTCCCCGAGCTGGTGGAAGCTTGTCGCACGCATG
ACTTTACGGATATTGTTATGGTTCAAGAAACGAGGGGGCAGCCCGATGGG
TTGCTGGTGTGTCACTTGCCTTTGGGTCCCACTGCTTATTTCACCTTGTC
GAATGTGGTGATGCGGCATGATATTGAAGACCGAGCTACGGTTTCGGAGG
CCTACCCTCACCTAATCTTTGAGGGATTTACGTCTAGCCTAGGGCAGAGG
GTGGCAGACATTTTGAAGTATACGTTTCCGGCGCCAAAGGCCGAGACGAA
GCGGGTGGTGACGTTTGCGAATGAGGATGACCAGATCGTGTTTCGGCATC
ACACTTTTGAGAAGGCTCCGGGAGTGAAGGGGGAGGTGACTCTCAAGGAG
GTGGGGCCTCGGTTTGATCTGACCTTGTTTCAAGTCAAATTGGGAACGTT
GGAGCAGGCGGATGCGGAAACAGAGTATGTTTTCAGGCCGTACATGAACA
CAGCCAAGAAGAGGAGGATGCTTTAA
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Synonyms
Publications