jgi.p|Nanoce1779_2|583833, mRNA_2924 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583833
Unique NamemRNA_2924
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1535
Alignment locationscaffold_7:263176..264710 +

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Properties
Property NameValue
TranscriptId583919
TrackFilteredModels2
ProteinId583833
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:263176..264710 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583833gene_2924Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583833mRNA_2924-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2924CDS_2924Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2924 ID=mRNA_2924|Name=jgi.p|Nanoce1779_2|583833|organism=Nannochloropsis oceanica|type=mRNA|length=1535bp
AAGAGCCGGCGTCGTGTACTTTCCCTCCCTCCAGAGTCCCCCGCGACCAG
CCAAGTGGCAACGGCAGACTTGGGAACTCTGTGGCGTATTATGGGGAGGA
AGGATAGTGTGCGAGAGGCATGGGAAAAAGCTCATCAAGGACATGTGCGC
TGTGGAACAGCAGCGCTGCTGGCGTTCAGAGCAGCCGCGACTCCCGAGTT
GCTCATCCGGTGCGCGGATCAGTAATCCCGGAAGCTAACTTGCATGTTGT
GAGCCCTTGACATTTTTATGGTCGCACCACCACTGGACCCTACCCTCTGC
ATCGTACCCTCTGTTCCCATCAATGCTCCCTTGAGAGTTTGGATTTTGGG
CGCCGGACCCCGCTTTTCAATGTCAAAGCGAGGCAGCCTCCAAGCACCCA
TCAGGCGTTACACTTGTCTGATCGTCAACCCTTGCCCCAACAACAAACCA
TACAGGCAGCACGTTATCCACCACCTGACACATATAAATCTTCGTCACTC
CCTCATCTAGCCGCCGACACTCAAAGCTAGCTAGCAACACCCACTCCGCT
CAGCAACATGCCTCGATTCACGAGGGCCTGGGCGATGTCCCTCCTCGTCG
TTGCTCCCACGCTGGCCGTGGCCTTTGCTGCAGGTCACTCTGCATCATCG
CCCTCGACTTCGCGCAGCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAG
TACCACACAGGACCGTCCCGTCAAGATGCACAGGGGCCTGCAAAAGCGGA
CGAGTTTCGTGATCCTTGAAGAGTTCGCACACGACCCTGAGGCGTTCACA
CAAGGGCTGGTCTACGAGGATGACGGTACCCTCCTAGAAGGCACTGGGCT
GTACGGCAAGTCCAAATTGCGGCGAGTAAATGCTAAGACGGGCGAGGTGA
TGGCGTCGGAAGAGATCGACAAGCGGTACTTTGGGGAGGGTATCGTGGCG
GTGGACGACAAGATCATTCAGATCACCTGGAAAGAACGCAAAGCTCTGGT
GTATGGTCGCCAAAACCTGACGTTGCTCTACGACTTTATCTACGACACGA
GCAACCATGAAGGATGGGGTATCACTACGGATGGAGATCGTCTGATTGTG
TCCGACGGCTCGTCGAATTTGCATTTCTGGGACAAAACCACTTACCAAGA
AATTCCCAATTCGCGCTTGCGTGTCGAAGACGGCTTTGGAAAAGCCGTGA
ATCACTTGAATGAGTTGGAATATGCCTATGGTTATGTGTGGGCGAACATC
TGGTTGGCAGATGATATAGTTCAGATTGACCCGAGCACGGGCAAGGTGGT
GGCGTTTTACGATTTTTCTGTGCTGTATCCTCACACTCAACGGATGAGTG
TCGACCAGGTCCTTAACGGGATTGCATACGATTCGACCGAGGATGTTTTT
TATTTGACGGGAAAGTGGTGGCCGAAATACTACAAAGTCAAGATGTGCAT
TGAGGAAAACGCGGTGTGTGCGGCTGATGTAGGAGATGGGGAAACGTCGC
CCCCGAAGTAGTAAGGAAGGAATGGAAGGGGGGAG
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protein sequence of jgi.p|Nanoce1779_2|583833

>mRNA_2924-protein ID=mRNA_2924-protein|Name=jgi.p|Nanoce1779_2|583833|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp
MPRFTRAWAMSLLVVAPTLAVAFAAGHSASSPSTSRSSSSSGSSSSSSTT
QDRPVKMHRGLQKRTSFVILEEFAHDPEAFTQGLVYEDDGTLLEGTGLYG
KSKLRRVNAKTGEVMASEEIDKRYFGEGIVAVDDKIIQITWKERKALVYG
RQNLTLLYDFIYDTSNHEGWGITTDGDRLIVSDGSSNLHFWDKTTYQEIP
NSRLRVEDGFGKAVNHLNELEYAYGYVWANIWLADDIVQIDPSTGKVVAF
YDFSVLYPHTQRMSVDQVLNGIAYDSTEDVFYLTGKWWPKYYKVKMCIEE
NAVCAADVGDGETSPPK*
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mRNA from alignment at scaffold_7:263176..264710+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2924 ID=mRNA_2924|Name=jgi.p|Nanoce1779_2|583833|organism=Nannochloropsis oceanica|type=mRNA|length=1535bp|location=Sequence derived from alignment at scaffold_7:263176..264710+ (Nannochloropsis oceanica)
AAGAGCCGGCGTCGTGTACTTTCCCTCCCTCCAGAGTCCCCCGCGACCAG
CCAAGTGGCAACGGCAGACTTGGGAACTCTGTGGCGTATTATGGGGAGGA
AGGATAGTGTGCGAGAGGCATGGGAAAAAGCTCATCAAGGACATGTGCGC
TGTGGAACAGCAGCGCTGCTGGCGTTCAGAGCAGCCGCGACTCCCGAGTT
GCTCATCCGGTGCGCGGATCAGTAATCCCGGAAGCTAACTTGCATGTTGT
GAGCCCTTGACATTTTTATGGTCGCACCACCACTGGACCCTACCCTCTGC
ATCGTACCCTCTGTTCCCATCAATGCTCCCTTGAGAGTTTGGATTTTGGG
CGCCGGACCCCGCTTTTCAATGTCAAAGCGAGGCAGCCTCCAAGCACCCA
TCAGGCGTTACACTTGTCTGATCGTCAACCCTTGCCCCAACAACAAACCA
TACAGGCAGCACGTTATCCACCACCTGACACATATAAATCTTCGTCACTC
CCTCATCTAGCCGCCGACACTCAAAGCTAGCTAGCAACACCCACTCCGCT
CAGCAACATGCCTCGATTCACGAGGGCCTGGGCGATGTCCCTCCTCGTCG
TTGCTCCCACGCTGGCCGTGGCCTTTGCTGCAGGTCACTCTGCATCATCG
CCCTCGACTTCGCGCAGCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAG
TACCACACAGGACCGTCCCGTCAAGATGCACAGGGGCCTGCAAAAGCGGA
CGAGTTTCGTGATCCTTGAAGAGTTCGCACACGACCCTGAGGCGTTCACA
CAAGGGCTGGTCTACGAGGATGACGGTACCCTCCTAGAAGGCACTGGGCT
GTACGGCAAGTCCAAATTGCGGCGAGTAAATGCTAAGACGGGCGAGGTGA
TGGCGTCGGAAGAGATCGACAAGCGGTACTTTGGGGAGGGTATCGTGGCG
GTGGACGACAAGATCATTCAGATCACCTGGAAAGAACGCAAAGCTCTGGT
GTATGGTCGCCAAAACCTGACGTTGCTCTACGACTTTATCTACGACACGA
GCAACCATGAAGGATGGGGTATCACTACGGATGGAGATCGTCTGATTGTG
TCCGACGGCTCGTCGAATTTGCATTTCTGGGACAAAACCACTTACCAAGA
AATTCCCAATTCGCGCTTGCGTGTCGAAGACGGCTTTGGAAAAGCCGTGA
ATCACTTGAATGAGTTGGAATATGCCTATGGTTATGTGTGGGCGAACATC
TGGTTGGCAGATGATATAGTTCAGATTGACCCGAGCACGGGCAAGGTGGT
GGCGTTTTACGATTTTTCTGTGCTGTATCCTCACACTCAACGGATGAGTG
TCGACCAGGTCCTTAACGGGATTGCATACGATTCGACCGAGGATGTTTTT
TATTTGACGGGAAAGTGGTGGCCGAAATACTACAAAGTCAAGATGTGCAT
TGAGGAAAACGCGGTGTGTGCGGCTGATGTAGGAGATGGGGAAACGTCGC
CCCCGAAGTAGTAAGGAAGGAATGGAAGGGGGGAG
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Coding sequence (CDS) from alignment at scaffold_7:263176..264710+

>mRNA_2924 ID=mRNA_2924|Name=jgi.p|Nanoce1779_2|583833|organism=Nannochloropsis oceanica|type=CDS|length=954bp|location=Sequence derived from alignment at scaffold_7:263176..264710+ (Nannochloropsis oceanica)
ATGCCTCGATTCACGAGGGCCTGGGCGATGTCCCTCCTCGTCGTTGCTCC
CACGCTGGCCGTGGCCTTTGCTGCAGGTCACTCTGCATCATCGCCCTCGA
CTTCGCGCAGCAGCAGCAGCAGCGGCAGCAGCAGCAGCAGCAGTACCACA
CAGGACCGTCCCGTCAAGATGCACAGGGGCCTGCAAAAGCGGACGAGTTT
CGTGATCCTTGAAGAGTTCGCACACGACCCTGAGGCGTTCACACAAGGGC
TGGTCTACGAGGATGACGGTACCCTCCTAGAAGGCACTGGGCTGTACGGC
AAGTCCAAATTGCGGCGAGTAAATGCTAAGACGGGCGAGGTGATGGCGTC
GGAAGAGATCGACAAGCGGTACTTTGGGGAGGGTATCGTGGCGGTGGACG
ACAAGATCATTCAGATCACCTGGAAAGAACGCAAAGCTCTGGTGTATGGT
CGCCAAAACCTGACGTTGCTCTACGACTTTATCTACGACACGAGCAACCA
TGAAGGATGGGGTATCACTACGGATGGAGATCGTCTGATTGTGTCCGACG
GCTCGTCGAATTTGCATTTCTGGGACAAAACCACTTACCAAGAAATTCCC
AATTCGCGCTTGCGTGTCGAAGACGGCTTTGGAAAAGCCGTGAATCACTT
GAATGAGTTGGAATATGCCTATGGTTATGTGTGGGCGAACATCTGGTTGG
CAGATGATATAGTTCAGATTGACCCGAGCACGGGCAAGGTGGTGGCGTTT
TACGATTTTTCTGTGCTGTATCCTCACACTCAACGGATGAGTGTCGACCA
GGTCCTTAACGGGATTGCATACGATTCGACCGAGGATGTTTTTTATTTGA
CGGGAAAGTGGTGGCCGAAATACTACAAAGTCAAGATGTGCATTGAGGAA
AACGCGGTGTGTGCGGCTGATGTAGGAGATGGGGAAACGTCGCCCCCGAA
GTAG
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Synonyms
Publications