jgi.p|Nanoce1779_2|583815, mRNA_2921 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|583815
Unique Name	mRNA_2921
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1029
Alignment location	scaffold_7:250745..251871 +

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Properties


Property Name	Value
TranscriptId	583901
Track	FilteredModels2
ProteinId	583815

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:250745..251871 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583815	gene_2921	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583815	mRNA_2921-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2921	CDS_2921	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:250745..251871+
coding sequence from alignment at scaffold_7:250745..251871+

mRNA sequence

>mRNA_2921 ID=mRNA_2921|Name=jgi.p|Nanoce1779_2|583815|organism=Nannochloropsis oceanica|type=mRNA|length=1029bp
TATAAACACACAGGTACACCGAAACACTCGCGCCTTGACCACAGGCATTC
CTAAACCACTATAGCCGGGGGGGCGACGCGATCCTACAATTCCATGATCG
GTACGTTTGCCTTCGGCACTACCCTGGAAAGTATGGTTGTACCTTTACTT
GTACAGACTGCATATATCAGGAGCTGTCGTTGTGGTGGTGGGAATGAGGA
TAGAAAATGGATTTGCTCTAGTGCGCGACCCTATACCCAAGTCCCTCGCC
CAGCACGCTCTCGTTCCCTTCTCTCGTTTACACACAATTTGTCGACGGAA
TGTGATCCATGCTCCATTTTCCATGCCCGCTCTCCAACTGAACTTCTACT
TCGCCTGATTTATCCCCACGCTCGCTTGTGACGCCCTCCACAACCGACGA
GCAATATGTCATTGTCCGGTTTTCACTTGCCTTTGTGACATGTTTGGTAG
GATATATGCAAGACTAGGAGTTGGGGACTAAGGTAGCGTTGAAATGGACG
GTGATGACGGTCATCATCACTATAAATGTGTCGCAGATTTGGGCGATGTA
TTGCTTGGTGGCTTTTTATCATGAGTTTGCGCACGAGCTGAGAGCAATCA
ACCCGTTTTGGAAGTTTGTGGTGGTCAAGGCGGTGATCTTCATGTCGTTT
TGGCAGGGGTTGGTGTTAAGTGGAATGGCCCGAGGAGGGATCATTACCAG
TTACATGGATTATAGCAAATTGCGAGTGGAATCCAGAACTTGCTAATTTG
CATTGAGATAGCGGTGATTATTGTGGCGCATATGTGGGTTTTCTCGTACA
AGGACATGGAAATTATCGTCAAACCCGAAGATATGAAGGCCCGTACCCCA
TGGACGGCATGGGTTGACATTTTGCCCTGGGATATGGTGAGCGATTTCCA
GGAGATCGTTCTCAACGGCTTTGGCATCTGCACCAAGATGCAAAAAAAGT
CTACGCCGGCTTTGAGCCCTAAAAAGGGTGCTACACCGGTGATTGTAACT
CCATGAGGAGGGAGTGGAGGAGAAGGAGG

protein sequence of jgi.p|Nanoce1779_2|583815

>mRNA_2921-protein ID=mRNA_2921-protein|Name=jgi.p|Nanoce1779_2|583815|organism=Nannochloropsis oceanica|type=polypeptide|length=81bp
MTVIITINVSQIWAMYCLVAFYHEFAHELRAINPFWKFVVVKAVIFMSFW
QGLVLSGMARGGIITSYMDYSKLRVESRTC*

mRNA from alignment at scaffold_7:250745..251871+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2921 ID=mRNA_2921|Name=jgi.p|Nanoce1779_2|583815|organism=Nannochloropsis oceanica|type=mRNA|length=1127bp|location=Sequence derived from alignment at scaffold_7:250745..251871+ (Nannochloropsis oceanica)
TATAAACACACAGGTACACCGAAACACTCGCGCCTTGACCACAGGCATTC
CTAAACCACTATAGCCGGGGGGGCGACGCGATCCTACAATTCCATGATCG
GTACGTTTGCCTTCGGCACTACCCTGGAAAGTATGGTTGTACCTTTACTT
GTACAGACTGCATATATCAGGAGCTGTCGTTGTGGTGGTGGGAATGAGGA
TAGAAAATGGATTTGCTCTAGTGCGCGACCCTATACCCAAGTCCCTCGCC
CAGCACGCTCTCGTTCCCTTCTCTCGTTTACACACAATTTGTCGACGGAA
TGTGATCCATGCTCCATTTTCCATGCCCGCTCTCCAACTGAACTTCTACT
TCGCCTGATTTATCCCCACGCTCGCTTGTGACGCCCTCCACAACCGACGA
GCAATATGTCATTGTCCGGTTTTCACTTGCCTTTGTGACATGTTTGGTAG
GATATATGCAAGACTAGGAGTTGGGGACTAAGGTAGCGTTGAAATGGACG
GTGATGACGGTCATCATCACTATAAATGTGTCGCAGATTTGGGCGATGTA
TTGCTTGGTGGCTTTTTATCATGAGTTTGCGCACGAGCTGAGAGCAATCA
ACCCGTTTTGGAAGTTTGTGGTGGTCAAGGCGGTGATCTTCATGTCGTTT
TGGCAGGGGTTGGTGTTAAGTGGAATGGCCCGAGGAGGGATCATTACCAG
TTACATGGATTATAGCAAATTGCGAGTGGAATCCAGAACTTGCTAATTTG
CATTGAGATAGCGGTGATTATTGTGGCGCATATGTGGGTTTTCTCGTACA
AGGACATGGAAATTATCGTCAGTAAGTAAAAGGAAGGGAGACAGCGGAGG
GAGGAGTCGATAGCAAGGTGTAAATCAACTAGAATAACGTCACACTTACA
CACATGACCTTACTAACAGAACCCGAAGATATGAAGGCCCGTACCCCATG
GACGGCATGGGTTGACATTTTGCCCTGGGATATGGTGAGCGATTTCCAGG
AGATCGTTCTCAACGGCTTTGGCATCTGCACCAAGATGCAAAAAAAGTCT
ACGCCGGCTTTGAGCCCTAAAAAGGGTGCTACACCGGTGATTGTAACTCC
ATGAGGAGGGAGTGGAGGAGAAGGAGG

Coding sequence (CDS) from alignment at scaffold_7:250745..251871+

>mRNA_2921 ID=mRNA_2921|Name=jgi.p|Nanoce1779_2|583815|organism=Nannochloropsis oceanica|type=CDS|length=243bp|location=Sequence derived from alignment at scaffold_7:250745..251871+ (Nannochloropsis oceanica)
ATGACGGTCATCATCACTATAAATGTGTCGCAGATTTGGGCGATGTATTG
CTTGGTGGCTTTTTATCATGAGTTTGCGCACGAGCTGAGAGCAATCAACC
CGTTTTGGAAGTTTGTGGTGGTCAAGGCGGTGATCTTCATGTCGTTTTGG
CAGGGGTTGGTGTTAAGTGGAATGGCCCGAGGAGGGATCATTACCAGTTA
CATGGATTATAGCAAATTGCGAGTGGAATCCAGAACTTGCTAA

Synonyms

Publications