jgi.p|Nanoce1779_2|583799, mRNA_2918 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583799
Unique NamemRNA_2918
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length698
Alignment locationscaffold_7:240344..241041 +

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Properties
Property NameValue
TranscriptId583885
TrackFilteredModels2
ProteinId583799
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:240344..241041 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583799gene_2918Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583799mRNA_2918-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2918CDS_2918Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2918 ID=mRNA_2918|Name=jgi.p|Nanoce1779_2|583799|organism=Nannochloropsis oceanica|type=mRNA|length=698bp
GAGAAGCTCATGACGAAGGCTTCTTCCTGCACGTTTTGGATGCCCCGCGC
GCCCTCTTTCCCATTCAGTTAAGTATTTCCGGAGGTCTCCTACAGGCACA
CGCACCTCCGCGAGACTCTGTTGTAGGCCAGGACTGGAAGGCGAGGTTTA
CAGACGATAGTGATAGCCTGGCACAATATTTTCAAGCAACGCAACATGTG
TGAGAGCCCTATGAGACTACTCAGAGGAAGGACCAGTCAGGAGCGACAGC
CATTATCTATGTGATTCCAATCAAGCCACTGTGCCACCTCCAGCGTCACT
GTATCATCTTGCGAAGCACTTCTTGGACCTGGCCGGCAAAGGCTCGGTAG
TGGTGCTGTGGTCGTGCCGCCTCTTCCCACACTAGTTCGAACTCGTGCCT
CCCCGCAGCAGCTGTTTTCCCACCCGACGGACAACAGAGGGAAGCATCAG
CAACACCACCCCAAAATCCTTCGCATACTATGTGTGACTCAATTATTTTG
TTATTCGCGTGCTCACCCGTTCCTTACACCGGCGGGACTGGCCGTGCTCT
TGTCTTCCGCCAGGGGACGCTCCTGTGGCTGTGGTGCCTTCCAGTTCTCA
CTCTGTCCTACCCAACGATAATAACGCACAAATACATCCCTTCCTCCGCA
CAGGGTTTTTCCGAGTCGCTTTGCTCGTTTCCGTAGGCGTGCGTGTCA
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protein sequence of jgi.p|Nanoce1779_2|583799

>mRNA_2918-protein ID=mRNA_2918-protein|Name=jgi.p|Nanoce1779_2|583799|organism=Nannochloropsis oceanica|type=polypeptide|length=69bp
MCDSIILLFACSPVPYTGGTGRALVFRQGTLLWLWCLPVLTLSYPTIITH
KYIPSSAQGFSESLCSFP*
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mRNA from alignment at scaffold_7:240344..241041+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2918 ID=mRNA_2918|Name=jgi.p|Nanoce1779_2|583799|organism=Nannochloropsis oceanica|type=mRNA|length=698bp|location=Sequence derived from alignment at scaffold_7:240344..241041+ (Nannochloropsis oceanica)
GAGAAGCTCATGACGAAGGCTTCTTCCTGCACGTTTTGGATGCCCCGCGC
GCCCTCTTTCCCATTCAGTTAAGTATTTCCGGAGGTCTCCTACAGGCACA
CGCACCTCCGCGAGACTCTGTTGTAGGCCAGGACTGGAAGGCGAGGTTTA
CAGACGATAGTGATAGCCTGGCACAATATTTTCAAGCAACGCAACATGTG
TGAGAGCCCTATGAGACTACTCAGAGGAAGGACCAGTCAGGAGCGACAGC
CATTATCTATGTGATTCCAATCAAGCCACTGTGCCACCTCCAGCGTCACT
GTATCATCTTGCGAAGCACTTCTTGGACCTGGCCGGCAAAGGCTCGGTAG
TGGTGCTGTGGTCGTGCCGCCTCTTCCCACACTAGTTCGAACTCGTGCCT
CCCCGCAGCAGCTGTTTTCCCACCCGACGGACAACAGAGGGAAGCATCAG
CAACACCACCCCAAAATCCTTCGCATACTATGTGTGACTCAATTATTTTG
TTATTCGCGTGCTCACCCGTTCCTTACACCGGCGGGACTGGCCGTGCTCT
TGTCTTCCGCCAGGGGACGCTCCTGTGGCTGTGGTGCCTTCCAGTTCTCA
CTCTGTCCTACCCAACGATAATAACGCACAAATACATCCCTTCCTCCGCA
CAGGGTTTTTCCGAGTCGCTTTGCTCGTTTCCGTAGGCGTGCGTGTCA
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Coding sequence (CDS) from alignment at scaffold_7:240344..241041+

>mRNA_2918 ID=mRNA_2918|Name=jgi.p|Nanoce1779_2|583799|organism=Nannochloropsis oceanica|type=CDS|length=207bp|location=Sequence derived from alignment at scaffold_7:240344..241041+ (Nannochloropsis oceanica)
ATGTGTGACTCAATTATTTTGTTATTCGCGTGCTCACCCGTTCCTTACAC
CGGCGGGACTGGCCGTGCTCTTGTCTTCCGCCAGGGGACGCTCCTGTGGC
TGTGGTGCCTTCCAGTTCTCACTCTGTCCTACCCAACGATAATAACGCAC
AAATACATCCCTTCCTCCGCACAGGGTTTTTCCGAGTCGCTTTGCTCGTT
TCCGTAG
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Synonyms
Publications