Properties
| Property Name | Value |
|---|
| TranscriptId | 583883 |
| Track | FilteredModels2 |
| ProteinId | 583797 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_7 | supercontig | scaffold_7:237341..240074 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2917 ID=mRNA_2917|Name=jgi.p|Nanoce1779_2|583797|organism=Nannochloropsis oceanica|type=mRNA|length=2166bp
ATACCATGGCCTTGCCAATCTACGATGCGGATCAGCCAATGCCCATGACG
GAATCTTCCTCTTCCTCTTCCTCCTCCTCGACCGGCTCTGAATCTCTTGA
TGGCCCCTACGACGACGACGTGGTCGATATGCCACTCGCCCAAAAATGTG
CTCTCGGTCATCCCATTGCCACCACGAACGCCAACGGCATTACCAGCAGC
AGCGTCGTGAATGGCAATGGCATCACATATTCCTGTAATGGAGCTCTAAG
CAGCAGAAGCAAGAACATCAGTTACGACAAGCTTCCCCCCCGCAGCGCAG
CAGCATCGGCAGAAGCAGCAGCAGCCGCCGCCGCCGCAGCAGCAGGAGCT
GCGGCTGTCGCGCGCTTATCACCATCAATTATAAAGAACAGTACCAACGA
TGGGATGATGAATGGCGGTGGACATTATAATCATAGACATAGCGGCGTTT
GTTGCCATGGACCCGAGGAGGAGGATGAGGACGAAGACGAGGTGCACTCA
CACCAACCAAATAGTAGCAGCGGCAGCAGCGGTACCATTCCACGGGGAGC
AGAGATCCGATCCACAGCGTCTGATCAACGAAAAGGAGAGAAGAAGGAAG
AGGACGCGTTTGGTCAAGGGCCGGAGGGGGAGAGATTGAGGCGGATGTCA
GCTGCTGTAAGGACGTTGTTGGAGTGTGTCGGGGAAGACCCAGACAGGGA
GGGATTGCGGTCGACACCGATGAGGATGGCGAAGGCATTGTTATATTGTA
CGAAGGGATATGAGCAGACGGTTCAGGGAGTGGTGGGAGGAGCAGTGTTC
GAAGAAGACCACTCGGAGATGGTGGTTGTGAAGGACATTAACGTCTTCTC
TATGTGCGAGCACCACATGGTGCCTTTCATGGGCAAAGTCCACATAGGCT
ACATCCCTCGGTCAAAGGTGTTGGGCTTGTCAAAACTGGCAAGAATTGCG
GAAATGTACGCCAGGAGGCTTCAGATCCAGGAGAGATTGACCAAGCAGAT
TGCTCAGGCGATTAATGAGGCGATCCAGCCACTGGGGGTCGCGGTGGTCA
TTGAAGCCACGCACATGTGCATGGTCATGCGTGGCGTGGAGAAACCTGGC
TCGGTCACAATCACTTCTTCTGTGACGGGTGCCTTCAAGAGCAACGCTGC
TACGCGCAATGAGTTCTTCTCGCTGATAAAGTCAGGTAGCAGCGGGTTTG
GCCGATAGGTGAGGGAGGGAGGGAAGGTAACGGGAATGTGCAGGACGTGA
TTTAGCAGTGTATCACAGTGAATTTCTCTTCTTTGACATGCTTTTCATTG
AGGTTTGGAGAGTCACTATTTCTTCGCGAAGAAGAGAGATTGGAACAGTG
AGTCATCAGTAGTAGCACTTCCTCTTTTGAGTGGGCGTGTTTTTTGCGGG
GCAATAGTAGAAGCAGCAGCAACAGCAGGAGGAGTAGTGACAACCGAGAG
GGACGTGACAGAGTAAGAGTTCTTAATGAGTATGTAGTGGATGGATGGGT
GTGAGGGTGAGTCGAACGCAAGATGGCAGAGGGGAGGAGTGAAAGTCTCT
AGCAACGTTGCCATGTCTGCACAACACCATAATCATGACGGGCAAGCGCG
CATTAAAAAATCTTGTCGGATGTACACTGTGTCCCGAGAAGGAATGGGAA
ATAAAAGCGGATTCATGGGTGAAACAAACAAACAAACAGCGTTACAGCGC
GAGGAGCCTTGCAGGAAAAAGGCGCAAGCGCAACAAAGGAAATCTGTGAC
ACCCAAACGGAAAGAAGTCCGGTCACTAGGAAAAAATAAGGATGACTGAC
GTGCCAAAATCAGATGAAAACGTGCCGTCATTGCTGCTATTGCTTCGTGT
TGCTAGCCAGTGCTTTTGGGTTTTGGCGTAGGAAGTAGGAAGTCGTTCGA
TGCGCTACAATCCGCACATCCAACGGCTTCCTTCCACCGCACACATCGAG
CAGCACCTAGGGGACGCGGTCTTTCAGAGAGCATCGACCACCAGTCGGAG
CAGCTAATAGAACAGATCTTCCTTCCGGGTGCTGCTCACACAAATGCCCT
AATCTTGTCCAATCCGCTACACCCACAATGTACAGGAGTCGAGGTTGGTG
CTCCTGAGCTATTCCCGCATTTTGCTTCCGCTTCCGCCGCCGAGCGCAAG
CAGCAGCAACGACAGC back to topprotein sequence of jgi.p|Nanoce1779_2|583797 >mRNA_2917-protein ID=mRNA_2917-protein|Name=jgi.p|Nanoce1779_2|583797|organism=Nannochloropsis oceanica|type=polypeptide|length=401bp
MALPIYDADQPMPMTESSSSSSSSSTGSESLDGPYDDDVVDMPLAQKCAL
GHPIATTNANGITSSSVVNGNGITYSCNGALSSRSKNISYDKLPPRSAAA
SAEAAAAAAAAAAGAAAVARLSPSIIKNSTNDGMMNGGGHYNHRHSGVCC
HGPEEEDEDEDEVHSHQPNSSSGSSGTIPRGAEIRSTASDQRKGEKKEED
AFGQGPEGERLRRMSAAVRTLLECVGEDPDREGLRSTPMRMAKALLYCTK
GYEQTVQGVVGGAVFEEDHSEMVVVKDINVFSMCEHHMVPFMGKVHIGYI
PRSKVLGLSKLARIAEMYARRLQIQERLTKQIAQAINEAIQPLGVAVVIE
ATHMCMVMRGVEKPGSVTITSSVTGAFKSNAATRNEFFSLIKSGSSGFGR
* back to topmRNA from alignment at scaffold_7:237341..240074- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2917 ID=mRNA_2917|Name=jgi.p|Nanoce1779_2|583797|organism=Nannochloropsis oceanica|type=mRNA|length=2734bp|location=Sequence derived from alignment at scaffold_7:237341..240074- (Nannochloropsis oceanica)
ATACCATGGCCTTGCCAATCTACGATGCGGATCAGCCAATGCCCATGACG
GTACGTTTATTTCTAGGTTTCTAGCAAGCGTGTGGTGCGGATAAGCAGAT
GTCGAAAGTGCAGGGCAATGAGCTTGCGGCGATCTCATTGGTCCTCATTT
ATGCCCCTGGGCGATGCGCAACACCGTGTCTATCTCATCCAAGCCTTGTC
ATGGCATCACCACATTCACTGCTTGTATGAGACAATTGGTATGTGGTCCG
TGTTTTGGTTCGTCTTAAATCGGTCAACAAGAGAGATCCAGTCCAACCCT
AGGACACAAACCCCCAGCACGTTTGATCCGCCATTTTTACTCATCTACGC
CCCTATCACATGTATACACTCCCAGGAATCTTCCTCTTCCTCTTCCTCCT
CCTCGACCGGCTCTGAATCTCTTGATGGCCCCTACGACGACGACGTGGTC
GATATGCCACTCGCCCAAAAATGTGCTCTCGGTCATCCCATTGCCACCAC
GAACGCCAACGGCATTACCAGCAGCAGCGTCGTGAATGGCAATGGCATCA
CATATTCCTGTAATGGAGCTCTAAGCAGCAGAAGCAAGAACATCAGTTAC
GACAAGCTTCCCCCCCGCAGCGCAGCAGCATCGGCAGAAGCAGCAGCAGC
CGCCGCCGCCGCAGCAGCAGGAGCTGCGGCTGTCGCGCGCTTATCACCAT
CAATTATAAAGAACAGTACCAACGATGGGATGATGAATGGCGGTGGACAT
TATAATCATAGACATAGCGGCGTTTGTTGCCATGGACCCGAGGAGGAGGA
TGAGGACGAAGACGAGGTGCACTCACACCAACCAAATAGTAGCAGCGGCA
GCAGCGGTACCATTCCACGGGGAGCAGAGATCCGATCCACAGCGTCTGAT
CAACGAAAAGGAGAGAAGAAGGAAGAGGACGCGTTTGGTCAAGGGCCGGA
GGGGGAGAGATTGAGGCGGATGTCAGCTGCTGTAAGGACGTTGTTGGAGT
GTGTCGGGGAAGACCCAGACAGGGAGGGATTGCGGTCGACACCGATGAGG
ATGGCGAAGGCATTGTTATATTGTACGAAGGGATATGAGCAGACGGTTCA
GGGAGTGGTGGGAGGAGCAGTGTTCGAAGAAGACCACTCGGAGATGGTGG
TTGTGAAGGACATTAACGTCTTCTCTATGTGCGAGCACCACATGGTGCCT
TTCATGGGCAAAGTCCACATAGGCTACATCCCTCGGTCAAAGGTGTTGGG
CTTGTCAAAACTGGCAAGAATTGCGGAAATGTACGCCAGGAGGCTTCAGA
TCCAGGAGAGATTGACCAAGCAGATTGCTCAGGCGATTAATGAGGCGATC
CAGCCACTGGGGGTCGCGGTGGTCATTGAAGCCACGTAAGTGATACGAGC
GAGGGGATGCGAAGGAAAGGGTGTAGCATTTTCGTATCCGAGCGTTGGTT
TCCAGTGTAAATGAAGGCCATCCTTTATCCTTGATTTGTCTCTTACTTGA
CCGTCTCTTCCCCCCCCTCCCCCCCTCTCTCTCTCTCTCTCTTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTTCCACCTCATTCCCTCTCTCCAGGCACATGTGCATGGTCATGCGT
GGCGTGGAGAAACCTGGCTCGGTCACAATCACTTCTTCTGTGACGGGTGC
CTTCAAGAGCAACGCTGCTACGCGCAATGAGTTCTTCTCGCTGATAAAGT
CAGGTAGCAGCGGGTTTGGCCGATAGGTGAGGGAGGGAGGGAAGGTAACG
GGAATGTGCAGGACGTGATTTAGCAGTGTATCACAGTGAATTTCTCTTCT
TTGACATGCTTTTCATTGAGGTTTGGAGAGTCACTATTTCTTCGCGAAGA
AGAGAGATTGGAACAGTGAGTCATCAGTAGTAGCACTTCCTCTTTTGAGT
GGGCGTGTTTTTTGCGGGGCAATAGTAGAAGCAGCAGCAACAGCAGGAGG
AGTAGTGACAACCGAGAGGGACGTGACAGAGTAAGAGTTCTTAATGAGTA
TGTAGTGGATGGATGGGTGTGAGGGTGAGTCGAACGCAAGATGGCAGAGG
GGAGGAGTGAAAGTCTCTAGCAACGTTGCCATGTCTGCACAACACCATAA
TCATGACGGGCAAGCGCGCATTAAAAAATCTTGTCGGATGTACACTGTGT
CCCGAGAAGGAATGGGAAATAAAAGCGGATTCATGGGTGAAACAAACAAA
CAAACAGCGTTACAGCGCGAGGAGCCTTGCAGGAAAAAGGCGCAAGCGCA
ACAAAGGAAATCTGTGACACCCAAACGGAAAGAAGTCCGGTCACTAGGAA
AAAATAAGGATGACTGACGTGCCAAAATCAGATGAAAACGTGCCGTCATT
GCTGCTATTGCTTCGTGTTGCTAGCCAGTGCTTTTGGGTTTTGGCGTAGG
AAGTAGGAAGTCGTTCGATGCGCTACAATCCGCACATCCAACGGCTTCCT
TCCACCGCACACATCGAGCAGCACCTAGGGGACGCGGTCTTTCAGAGAGC
ATCGACCACCAGTCGGAGCAGCTAATAGAACAGATCTTCCTTCCGGGTGC
TGCTCACACAAATGCCCTAATCTTGTCCAATCCGCTACACCCACAATGTA
CAGGAGTCGAGGTTGGTGCTCCTGAGCTATTCCCGCATTTTGCTTCCGCT
TCCGCCGCCGAGCGCAAGCAGCAGCAACGACAGC back to topCoding sequence (CDS) from alignment at scaffold_7:237341..240074- >mRNA_2917 ID=mRNA_2917|Name=jgi.p|Nanoce1779_2|583797|organism=Nannochloropsis oceanica|type=CDS|length=3609bp|location=Sequence derived from alignment at scaffold_7:237341..240074- (Nannochloropsis oceanica)
GCACATGTGCATGGTCATGCGTGGCGTGGAGAAACCTGGCTCGGTCACAA
TCACTTCTTCTGTGACGGGTGCCTTCAAGAGCAACGCTGCTACGCGCAAT
GAGTTCTTCTCGCTGATAAAGTCAGGTAGCAGCGGGTTTGGCCGATAGGA
ATCTTCCTCTTCCTCTTCCTCCTCCTCGACCGGCTCTGAATCTCTTGATG
GCCCCTACGACGACGACGTGGTCGATATGCCACTCGCCCAAAAATGTGCT
CTCGGTCATCCCATTGCCACCACGAACGCCAACGGCATTACCAGCAGCAG
CGTCGTGAATGGCAATGGCATCACATATTCCTGTAATGGAGCTCTAAGCA
GCAGAAGCAAGAACATCAGTTACGACAAGCTTCCCCCCCGCAGCGCAGCA
GCATCGGCAGAAGCAGCAGCAGCCGCCGCCGCCGCAGCAGCAGGAGCTGC
GGCTGTCGCGCGCTTATCACCATCAATTATAAAGAACAGTACCAACGATG
GGATGATGAATGGCGGTGGACATTATAATCATAGACATAGCGGCGTTTGT
TGCCATGGACCCGAGGAGGAGGATGAGGACGAAGACGAGGTGCACTCACA
CCAACCAAATAGTAGCAGCGGCAGCAGCGGTACCATTCCACGGGGAGCAG
AGATCCGATCCACAGCGTCTGATCAACGAAAAGGAGAGAAGAAGGAAGAG
GACGCGTTTGGTCAAGGGCCGGAGGGGGAGAGATTGAGGCGGATGTCAGC
TGCTGTAAGGACGTTGTTGGAGTGTGTCGGGGAAGACCCAGACAGGGAGG
GATTGCGGTCGACACCGATGAGGATGGCGAAGGCATTGTTATATTGTACG
AAGGGATATGAGCAGACGGTTCAGGGAGTGGTGGGAGGAGCAGTGTTCGA
AGAAGACCACTCGGAGATGGTGGTTGTGAAGGACATTAACGTCTTCTCTA
TGTGCGAGCACCACATGGTGCCTTTCATGGGCAAAGTCCACATAGGCTAC
ATCCCTCGGTCAAAGGTGTTGGGCTTGTCAAAACTGGCAAGAATTGCGGA
AATGTACGCCAGGAGGCTTCAGATCCAGGAGAGATTGACCAAGCAGATTG
CTCAGGCGATTAATGAGGCGATCCAGCCACTGGGGGTCGCGGTGGTCATT
GAAGCCACATGGCCTTGCCAATCTACGATGCGGATCAGCCAATGCCCATG
ACGGCACATGTGCATGGTCATGCGTGGCGTGGAGAAACCTGGCTCGGTCA
CAATCACTTCTTCTGTGACGGGTGCCTTCAAGAGCAACGCTGCTACGCGC
AATGAGTTCTTCTCGCTGATAAAGTCAGGTAGCAGCGGGTTTGGCCGATA
GGAATCTTCCTCTTCCTCTTCCTCCTCCTCGACCGGCTCTGAATCTCTTG
ATGGCCCCTACGACGACGACGTGGTCGATATGCCACTCGCCCAAAAATGT
GCTCTCGGTCATCCCATTGCCACCACGAACGCCAACGGCATTACCAGCAG
CAGCGTCGTGAATGGCAATGGCATCACATATTCCTGTAATGGAGCTCTAA
GCAGCAGAAGCAAGAACATCAGTTACGACAAGCTTCCCCCCCGCAGCGCA
GCAGCATCGGCAGAAGCAGCAGCAGCCGCCGCCGCCGCAGCAGCAGGAGC
TGCGGCTGTCGCGCGCTTATCACCATCAATTATAAAGAACAGTACCAACG
ATGGGATGATGAATGGCGGTGGACATTATAATCATAGACATAGCGGCGTT
TGTTGCCATGGACCCGAGGAGGAGGATGAGGACGAAGACGAGGTGCACTC
ACACCAACCAAATAGTAGCAGCGGCAGCAGCGGTACCATTCCACGGGGAG
CAGAGATCCGATCCACAGCGTCTGATCAACGAAAAGGAGAGAAGAAGGAA
GAGGACGCGTTTGGTCAAGGGCCGGAGGGGGAGAGATTGAGGCGGATGTC
AGCTGCTGTAAGGACGTTGTTGGAGTGTGTCGGGGAAGACCCAGACAGGG
AGGGATTGCGGTCGACACCGATGAGGATGGCGAAGGCATTGTTATATTGT
ACGAAGGGATATGAGCAGACGGTTCAGGGAGTGGTGGGAGGAGCAGTGTT
CGAAGAAGACCACTCGGAGATGGTGGTTGTGAAGGACATTAACGTCTTCT
CTATGTGCGAGCACCACATGGTGCCTTTCATGGGCAAAGTCCACATAGGC
TACATCCCTCGGTCAAAGGTGTTGGGCTTGTCAAAACTGGCAAGAATTGC
GGAAATGTACGCCAGGAGGCTTCAGATCCAGGAGAGATTGACCAAGCAGA
TTGCTCAGGCGATTAATGAGGCGATCCAGCCACTGGGGGTCGCGGTGGTC
ATTGAAGCCACATGGCCTTGCCAATCTACGATGCGGATCAGCCAATGCCC
ATGACGGCACATGTGCATGGTCATGCGTGGCGTGGAGAAACCTGGCTCGG
TCACAATCACTTCTTCTGTGACGGGTGCCTTCAAGAGCAACGCTGCTACG
CGCAATGAGTTCTTCTCGCTGATAAAGTCAGGTAGCAGCGGGTTTGGCCG
ATAGGAATCTTCCTCTTCCTCTTCCTCCTCCTCGACCGGCTCTGAATCTC
TTGATGGCCCCTACGACGACGACGTGGTCGATATGCCACTCGCCCAAAAA
TGTGCTCTCGGTCATCCCATTGCCACCACGAACGCCAACGGCATTACCAG
CAGCAGCGTCGTGAATGGCAATGGCATCACATATTCCTGTAATGGAGCTC
TAAGCAGCAGAAGCAAGAACATCAGTTACGACAAGCTTCCCCCCCGCAGC
GCAGCAGCATCGGCAGAAGCAGCAGCAGCCGCCGCCGCCGCAGCAGCAGG
AGCTGCGGCTGTCGCGCGCTTATCACCATCAATTATAAAGAACAGTACCA
ACGATGGGATGATGAATGGCGGTGGACATTATAATCATAGACATAGCGGC
GTTTGTTGCCATGGACCCGAGGAGGAGGATGAGGACGAAGACGAGGTGCA
CTCACACCAACCAAATAGTAGCAGCGGCAGCAGCGGTACCATTCCACGGG
GAGCAGAGATCCGATCCACAGCGTCTGATCAACGAAAAGGAGAGAAGAAG
GAAGAGGACGCGTTTGGTCAAGGGCCGGAGGGGGAGAGATTGAGGCGGAT
GTCAGCTGCTGTAAGGACGTTGTTGGAGTGTGTCGGGGAAGACCCAGACA
GGGAGGGATTGCGGTCGACACCGATGAGGATGGCGAAGGCATTGTTATAT
TGTACGAAGGGATATGAGCAGACGGTTCAGGGAGTGGTGGGAGGAGCAGT
GTTCGAAGAAGACCACTCGGAGATGGTGGTTGTGAAGGACATTAACGTCT
TCTCTATGTGCGAGCACCACATGGTGCCTTTCATGGGCAAAGTCCACATA
GGCTACATCCCTCGGTCAAAGGTGTTGGGCTTGTCAAAACTGGCAAGAAT
TGCGGAAATGTACGCCAGGAGGCTTCAGATCCAGGAGAGATTGACCAAGC
AGATTGCTCAGGCGATTAATGAGGCGATCCAGCCACTGGGGGTCGCGGTG
GTCATTGAAGCCACATGGCCTTGCCAATCTACGATGCGGATCAGCCAATG
CCCATGACG back to top
|