jgi.p|Nanoce1779_2|583793, mRNA_2916 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583793
Unique NamemRNA_2916
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2401
Alignment locationscaffold_7:234983..237383 -

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Properties
Property NameValue
TranscriptId583879
TrackFilteredModels2
ProteinId583793
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:234983..237383 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583793gene_2916Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583793mRNA_2916-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2916CDS_2916Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2916 ID=mRNA_2916|Name=jgi.p|Nanoce1779_2|583793|organism=Nannochloropsis oceanica|type=mRNA|length=2401bp
GCTTCCGCTTCCGCCGCCGAGCGCAAGCAGCAGCAACGACAGCAACAGCA
GCAGCAGTAGTAGTAGTAGTGGTGGTAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCGTCAGCGGCAGCTGCATTTTGCGTCATTATCGTCTCCAGCAGAG
GTAGCCCAGCATCATTACACTACAACCGGTTCGCCATGCCGACCATCTCT
CTCGTCCGCAACGACCTCTTCACGGCCCTGGGCAAGACTTATACAGACGA
CGAGTTCCAAGACCTCTGTTTTGACTTTGGAATTGAGTTGGACGAGATAA
CGACCGAGGCCGAACTAGCGTCGAAAGAGGGAAGCAGCAGCAAGGGCAAG
GACGGGACGGTGGGTGGGGCGGTCATCTACAAGATTGACGTGCCTGCCAA
CAGGTATGACATTCTTTGCATGGAAGGATTGTCTCGCGCACTCCGCATTT
TTCTGGAGCTGGAAGAGGCGCCTGTGTATCGCAAGATCGAACCGACGTGG
AATGGTGGGGTGGGAGGGCGGATGACAATGACAGTGGAGGCCTCCACCGC
AGCGATTCGCCCCGTGGTGGTCTGCGCCATACTTCGCGATGTGGCCTTTG
ACCCATTGGTGTACAAGAGCTTCATCGACTTGCAAGAGCATTTGCACCGG
AATATCTGCCGGAGACGGACGTTGGTGGCGATAGGGACGCATGACCTCGA
CACCCTCAAAGGGCCTTTCACCTACACAGCAGCCGGACCCACCTCCATCC
AATTTAGTCCTCTGACGTCCGAAGACGGCCAGATCTTTAATGGCAAGGAA
CTCCTGGATTTCTATCGCACCGACGAGTCCGCGAAGCATCTGAAGCCATA
CACCGACATCATCTACGACGCACCTCTCTACCCCGTGCTCTACGACAGCC
AAGGCACAGTCCTCTCCCTTCCTCCCATCATCAACGGTCGCCACTCCCGC
ATCACCTTGGCAAGCCGCAATGTCTTTATTGAATGCACTGCCACCGATCG
CACCAAAGCCAATATTGTCCTCGACACAATGGTGACCATGTTCTCTCAAC
ACTGCGCCCAACCCTTCACCGTGGAGCCGGTAGACATCATCTACGAAGGA
GAGAACCGGCGGGTTGAAACGACCCCCCTCCTCTCCTCCCGTCAAGTAAC
GGCTAAGATGACGGATGTCGAAAGCATGGTCGGAAGGGAGTTGGGTGCTG
AGTTGGTATGTACGTTGTGCAAGAAAATGCAGCTCGGACCGGCCTCTTAC
GATAGGGCGACTGATTCCGTGGTGGTCACCGTCCCTCCCACTCGTTCGGA
TGTCCTGCACGCCGTGGATGTGATTGAAGACGTGGCGATTGCTTATGGGT
ACAACAATCTCCCAATTAAGGTTCCGGCAACTTTGACTGTTGGTAAGCCC
TTGCCGATAAATGCTTTCGCCGACTTGTTGAGAGATGAAGTCTCACGTGC
TGGTTATCTAGAGGTTTTGACACACGGATTATGCTCGCGAGCGGAGAATT
TTACGAAGCTCAGAAGGCCAGAGGCGCCGGCAGTGTCGTTGTCTAACCCG
GCGAATGAGGAATATGAGATAGTTAGGACGACACTCTTGCCTGGTTTGCT
GAAAGTATTGCAGCATAACCGAGCGATCCAAGTGAAGGAGGGCTTGCGGA
TTTTTGAGATTTCGGATGTCGTTCTCAGGGATGAGGAGACGGATGTGGGC
GCACGGAACGTGAGGAGGCTGGTGGCGTCTTACACATGTATGACAGCGGG
GTTTGAGTCCATCCATGGGTTGGTGGATCGGGTGATGTTGTTGTTGCAGG
TGGGCCCGACAGAGGCATATGCTGGGAATAGTATGAGAGGGGAGGAGAGG
ATGGCGGTTTTGAAGGAGGGGATGCAGTATTATATACAGCCGAGCGAGAA
TCCTACGTTTTTCCCAGGGAGATGCGCGGATGTGATGCTTGTGAAGAAGG
GGAATGAGGGGAAGCCGGAGAAGATTGGGACGTTTGGGGTATTACATCCC
GAGGTTCTGAAGTCATATGACATTCCTTTCCCTACCTCGGCATTGGAGAT
GGATCTCGAGCCGCTCATGTGAGATTTGCGCTGTGAGGAGTGAATGGAGG
ATAGCGACTGGGGAAGGTCGAGAGGGAGGATAGTTATTGATGTTAACGGA
GAGAACCAATTACCATTGTCTTACGGATGATGAATGGGGAAATTTGTTAA
TGTTGTTTTTTTCGCTCGCTCGGGACATCTGGAGAAACGGGGTTGGAACG
TAGAAGAACGGGTGTGGAAAAAGAAAGGAAGACCATCTCACGTATTACAA
CCACCAACCCCAGCCACCTACAGCAACAGGAGCGCCAGCACTATGGTCAG
TCGCCGCCACTGCCACTCCGGGCGGCACTTTTTGCTCGTTCTTCTGTTCC
T
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protein sequence of jgi.p|Nanoce1779_2|583793

>mRNA_2916-protein ID=mRNA_2916-protein|Name=jgi.p|Nanoce1779_2|583793|organism=Nannochloropsis oceanica|type=polypeptide|length=629bp
MPTISLVRNDLFTALGKTYTDDEFQDLCFDFGIELDEITTEAELASKEGS
SSKGKDGTVGGAVIYKIDVPANRYDILCMEGLSRALRIFLELEEAPVYRK
IEPTWNGGVGGRMTMTVEASTAAIRPVVVCAILRDVAFDPLVYKSFIDLQ
EHLHRNICRRRTLVAIGTHDLDTLKGPFTYTAAGPTSIQFSPLTSEDGQI
FNGKELLDFYRTDESAKHLKPYTDIIYDAPLYPVLYDSQGTVLSLPPIIN
GRHSRITLASRNVFIECTATDRTKANIVLDTMVTMFSQHCAQPFTVEPVD
IIYEGENRRVETTPLLSSRQVTAKMTDVESMVGRELGAELVCTLCKKMQL
GPASYDRATDSVVVTVPPTRSDVLHAVDVIEDVAIAYGYNNLPIKVPATL
TVGKPLPINAFADLLRDEVSRAGYLEVLTHGLCSRAENFTKLRRPEAPAV
SLSNPANEEYEIVRTTLLPGLLKVLQHNRAIQVKEGLRIFEISDVVLRDE
ETDVGARNVRRLVASYTCMTAGFESIHGLVDRVMLLLQVGPTEAYAGNSM
RGEERMAVLKEGMQYYIQPSENPTFFPGRCADVMLVKKGNEGKPEKIGTF
GVLHPEVLKSYDIPFPTSALEMDLEPLM*
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mRNA from alignment at scaffold_7:234983..237383-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2916 ID=mRNA_2916|Name=jgi.p|Nanoce1779_2|583793|organism=Nannochloropsis oceanica|type=mRNA|length=2401bp|location=Sequence derived from alignment at scaffold_7:234983..237383- (Nannochloropsis oceanica)
GCTTCCGCTTCCGCCGCCGAGCGCAAGCAGCAGCAACGACAGCAACAGCA
GCAGCAGTAGTAGTAGTAGTGGTGGTAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCGTCAGCGGCAGCTGCATTTTGCGTCATTATCGTCTCCAGCAGAG
GTAGCCCAGCATCATTACACTACAACCGGTTCGCCATGCCGACCATCTCT
CTCGTCCGCAACGACCTCTTCACGGCCCTGGGCAAGACTTATACAGACGA
CGAGTTCCAAGACCTCTGTTTTGACTTTGGAATTGAGTTGGACGAGATAA
CGACCGAGGCCGAACTAGCGTCGAAAGAGGGAAGCAGCAGCAAGGGCAAG
GACGGGACGGTGGGTGGGGCGGTCATCTACAAGATTGACGTGCCTGCCAA
CAGGTATGACATTCTTTGCATGGAAGGATTGTCTCGCGCACTCCGCATTT
TTCTGGAGCTGGAAGAGGCGCCTGTGTATCGCAAGATCGAACCGACGTGG
AATGGTGGGGTGGGAGGGCGGATGACAATGACAGTGGAGGCCTCCACCGC
AGCGATTCGCCCCGTGGTGGTCTGCGCCATACTTCGCGATGTGGCCTTTG
ACCCATTGGTGTACAAGAGCTTCATCGACTTGCAAGAGCATTTGCACCGG
AATATCTGCCGGAGACGGACGTTGGTGGCGATAGGGACGCATGACCTCGA
CACCCTCAAAGGGCCTTTCACCTACACAGCAGCCGGACCCACCTCCATCC
AATTTAGTCCTCTGACGTCCGAAGACGGCCAGATCTTTAATGGCAAGGAA
CTCCTGGATTTCTATCGCACCGACGAGTCCGCGAAGCATCTGAAGCCATA
CACCGACATCATCTACGACGCACCTCTCTACCCCGTGCTCTACGACAGCC
AAGGCACAGTCCTCTCCCTTCCTCCCATCATCAACGGTCGCCACTCCCGC
ATCACCTTGGCAAGCCGCAATGTCTTTATTGAATGCACTGCCACCGATCG
CACCAAAGCCAATATTGTCCTCGACACAATGGTGACCATGTTCTCTCAAC
ACTGCGCCCAACCCTTCACCGTGGAGCCGGTAGACATCATCTACGAAGGA
GAGAACCGGCGGGTTGAAACGACCCCCCTCCTCTCCTCCCGTCAAGTAAC
GGCTAAGATGACGGATGTCGAAAGCATGGTCGGAAGGGAGTTGGGTGCTG
AGTTGGTATGTACGTTGTGCAAGAAAATGCAGCTCGGACCGGCCTCTTAC
GATAGGGCGACTGATTCCGTGGTGGTCACCGTCCCTCCCACTCGTTCGGA
TGTCCTGCACGCCGTGGATGTGATTGAAGACGTGGCGATTGCTTATGGGT
ACAACAATCTCCCAATTAAGGTTCCGGCAACTTTGACTGTTGGTAAGCCC
TTGCCGATAAATGCTTTCGCCGACTTGTTGAGAGATGAAGTCTCACGTGC
TGGTTATCTAGAGGTTTTGACACACGGATTATGCTCGCGAGCGGAGAATT
TTACGAAGCTCAGAAGGCCAGAGGCGCCGGCAGTGTCGTTGTCTAACCCG
GCGAATGAGGAATATGAGATAGTTAGGACGACACTCTTGCCTGGTTTGCT
GAAAGTATTGCAGCATAACCGAGCGATCCAAGTGAAGGAGGGCTTGCGGA
TTTTTGAGATTTCGGATGTCGTTCTCAGGGATGAGGAGACGGATGTGGGC
GCACGGAACGTGAGGAGGCTGGTGGCGTCTTACACATGTATGACAGCGGG
GTTTGAGTCCATCCATGGGTTGGTGGATCGGGTGATGTTGTTGTTGCAGG
TGGGCCCGACAGAGGCATATGCTGGGAATAGTATGAGAGGGGAGGAGAGG
ATGGCGGTTTTGAAGGAGGGGATGCAGTATTATATACAGCCGAGCGAGAA
TCCTACGTTTTTCCCAGGGAGATGCGCGGATGTGATGCTTGTGAAGAAGG
GGAATGAGGGGAAGCCGGAGAAGATTGGGACGTTTGGGGTATTACATCCC
GAGGTTCTGAAGTCATATGACATTCCTTTCCCTACCTCGGCATTGGAGAT
GGATCTCGAGCCGCTCATGTGAGATTTGCGCTGTGAGGAGTGAATGGAGG
ATAGCGACTGGGGAAGGTCGAGAGGGAGGATAGTTATTGATGTTAACGGA
GAGAACCAATTACCATTGTCTTACGGATGATGAATGGGGAAATTTGTTAA
TGTTGTTTTTTTCGCTCGCTCGGGACATCTGGAGAAACGGGGTTGGAACG
TAGAAGAACGGGTGTGGAAAAAGAAAGGAAGACCATCTCACGTATTACAA
CCACCAACCCCAGCCACCTACAGCAACAGGAGCGCCAGCACTATGGTCAG
TCGCCGCCACTGCCACTCCGGGCGGCACTTTTTGCTCGTTCTTCTGTTCC
T
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Coding sequence (CDS) from alignment at scaffold_7:234983..237383-

>mRNA_2916 ID=mRNA_2916|Name=jgi.p|Nanoce1779_2|583793|organism=Nannochloropsis oceanica|type=CDS|length=1887bp|location=Sequence derived from alignment at scaffold_7:234983..237383- (Nannochloropsis oceanica)
ATGCCGACCATCTCTCTCGTCCGCAACGACCTCTTCACGGCCCTGGGCAA
GACTTATACAGACGACGAGTTCCAAGACCTCTGTTTTGACTTTGGAATTG
AGTTGGACGAGATAACGACCGAGGCCGAACTAGCGTCGAAAGAGGGAAGC
AGCAGCAAGGGCAAGGACGGGACGGTGGGTGGGGCGGTCATCTACAAGAT
TGACGTGCCTGCCAACAGGTATGACATTCTTTGCATGGAAGGATTGTCTC
GCGCACTCCGCATTTTTCTGGAGCTGGAAGAGGCGCCTGTGTATCGCAAG
ATCGAACCGACGTGGAATGGTGGGGTGGGAGGGCGGATGACAATGACAGT
GGAGGCCTCCACCGCAGCGATTCGCCCCGTGGTGGTCTGCGCCATACTTC
GCGATGTGGCCTTTGACCCATTGGTGTACAAGAGCTTCATCGACTTGCAA
GAGCATTTGCACCGGAATATCTGCCGGAGACGGACGTTGGTGGCGATAGG
GACGCATGACCTCGACACCCTCAAAGGGCCTTTCACCTACACAGCAGCCG
GACCCACCTCCATCCAATTTAGTCCTCTGACGTCCGAAGACGGCCAGATC
TTTAATGGCAAGGAACTCCTGGATTTCTATCGCACCGACGAGTCCGCGAA
GCATCTGAAGCCATACACCGACATCATCTACGACGCACCTCTCTACCCCG
TGCTCTACGACAGCCAAGGCACAGTCCTCTCCCTTCCTCCCATCATCAAC
GGTCGCCACTCCCGCATCACCTTGGCAAGCCGCAATGTCTTTATTGAATG
CACTGCCACCGATCGCACCAAAGCCAATATTGTCCTCGACACAATGGTGA
CCATGTTCTCTCAACACTGCGCCCAACCCTTCACCGTGGAGCCGGTAGAC
ATCATCTACGAAGGAGAGAACCGGCGGGTTGAAACGACCCCCCTCCTCTC
CTCCCGTCAAGTAACGGCTAAGATGACGGATGTCGAAAGCATGGTCGGAA
GGGAGTTGGGTGCTGAGTTGGTATGTACGTTGTGCAAGAAAATGCAGCTC
GGACCGGCCTCTTACGATAGGGCGACTGATTCCGTGGTGGTCACCGTCCC
TCCCACTCGTTCGGATGTCCTGCACGCCGTGGATGTGATTGAAGACGTGG
CGATTGCTTATGGGTACAACAATCTCCCAATTAAGGTTCCGGCAACTTTG
ACTGTTGGTAAGCCCTTGCCGATAAATGCTTTCGCCGACTTGTTGAGAGA
TGAAGTCTCACGTGCTGGTTATCTAGAGGTTTTGACACACGGATTATGCT
CGCGAGCGGAGAATTTTACGAAGCTCAGAAGGCCAGAGGCGCCGGCAGTG
TCGTTGTCTAACCCGGCGAATGAGGAATATGAGATAGTTAGGACGACACT
CTTGCCTGGTTTGCTGAAAGTATTGCAGCATAACCGAGCGATCCAAGTGA
AGGAGGGCTTGCGGATTTTTGAGATTTCGGATGTCGTTCTCAGGGATGAG
GAGACGGATGTGGGCGCACGGAACGTGAGGAGGCTGGTGGCGTCTTACAC
ATGTATGACAGCGGGGTTTGAGTCCATCCATGGGTTGGTGGATCGGGTGA
TGTTGTTGTTGCAGGTGGGCCCGACAGAGGCATATGCTGGGAATAGTATG
AGAGGGGAGGAGAGGATGGCGGTTTTGAAGGAGGGGATGCAGTATTATAT
ACAGCCGAGCGAGAATCCTACGTTTTTCCCAGGGAGATGCGCGGATGTGA
TGCTTGTGAAGAAGGGGAATGAGGGGAAGCCGGAGAAGATTGGGACGTTT
GGGGTATTACATCCCGAGGTTCTGAAGTCATATGACATTCCTTTCCCTAC
CTCGGCATTGGAGATGGATCTCGAGCCGCTCATGTGA
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Synonyms
Publications