jgi.p|Nanoce1779_2|553348, mRNA_2914 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|553348
Unique NamemRNA_2914
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length453
Alignment locationscaffold_7:233720..234172 -

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Properties
Property NameValue
TranscriptId553434
TrackFilteredModels2
ProteinId553348
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:233720..234172 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|553348gene_2914Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2914CDS_2914Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|553348mRNA_2914-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2914 ID=mRNA_2914|Name=jgi.p|Nanoce1779_2|553348|organism=Nannochloropsis oceanica|type=mRNA|length=453bp
ATGGCGCGACAAATAGTAAGCCTTGCTCTTCCTTCCCTCACTTCCTCCAT
CCCTCTCATCAACAGCATATGCTTCGATGGCGAGCGTTTCCGCCCCTGCG
ATTTACGAGATCCCCTGCTCCGCTGGTCTATGGGTGTCCGTCTCACGGGC
GGACAAGGAGAACGATTCTTCTACAAGGCGTTCCAACCGGATTTGTGTCT
GACCTGGACGAGGGGTAAGAAGGGTGTGACTGTAGGCGATTGCTCAGGGA
AGGGAGCGAAGTCATGGAGCATAAAAAGAGGGCAGCTGGCTCTGGGTGAT
GGGAAAATGTGCGTAGTCAGAAATTTTGACAACACCGCAGGAATCGCGAA
ATGCACCGAGGCATTTGAGTATCTGAGTGTGGTGCCGCATGATCCGACGG
CGGGTAAATTGACGCAGGGCGGTCCTGTGACAGCAGGAATAGAACTTGGG
TAG
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protein sequence of jgi.p|Nanoce1779_2|553348

>mRNA_2914-protein ID=mRNA_2914-protein|Name=jgi.p|Nanoce1779_2|553348|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MARQIVSLALPSLTSSIPLINSICFDGERFRPCDLRDPLLRWSMGVRLTG
GQGERFFYKAFQPDLCLTWTRGKKGVTVGDCSGKGAKSWSIKRGQLALGD
GKMCVVRNFDNTAGIAKCTEAFEYLSVVPHDPTAGKLTQGGPVTAGIELG
*
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mRNA from alignment at scaffold_7:233720..234172-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2914 ID=mRNA_2914|Name=jgi.p|Nanoce1779_2|553348|organism=Nannochloropsis oceanica|type=mRNA|length=453bp|location=Sequence derived from alignment at scaffold_7:233720..234172- (Nannochloropsis oceanica)
ATGGCGCGACAAATAGTAAGCCTTGCTCTTCCTTCCCTCACTTCCTCCAT
CCCTCTCATCAACAGCATATGCTTCGATGGCGAGCGTTTCCGCCCCTGCG
ATTTACGAGATCCCCTGCTCCGCTGGTCTATGGGTGTCCGTCTCACGGGC
GGACAAGGAGAACGATTCTTCTACAAGGCGTTCCAACCGGATTTGTGTCT
GACCTGGACGAGGGGTAAGAAGGGTGTGACTGTAGGCGATTGCTCAGGGA
AGGGAGCGAAGTCATGGAGCATAAAAAGAGGGCAGCTGGCTCTGGGTGAT
GGGAAAATGTGCGTAGTCAGAAATTTTGACAACACCGCAGGAATCGCGAA
ATGCACCGAGGCATTTGAGTATCTGAGTGTGGTGCCGCATGATCCGACGG
CGGGTAAATTGACGCAGGGCGGTCCTGTGACAGCAGGAATAGAACTTGGG
TAG
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Coding sequence (CDS) from alignment at scaffold_7:233720..234172-

>mRNA_2914 ID=mRNA_2914|Name=jgi.p|Nanoce1779_2|553348|organism=Nannochloropsis oceanica|type=CDS|length=453bp|location=Sequence derived from alignment at scaffold_7:233720..234172- (Nannochloropsis oceanica)
ATGGCGCGACAAATAGTAAGCCTTGCTCTTCCTTCCCTCACTTCCTCCAT
CCCTCTCATCAACAGCATATGCTTCGATGGCGAGCGTTTCCGCCCCTGCG
ATTTACGAGATCCCCTGCTCCGCTGGTCTATGGGTGTCCGTCTCACGGGC
GGACAAGGAGAACGATTCTTCTACAAGGCGTTCCAACCGGATTTGTGTCT
GACCTGGACGAGGGGTAAGAAGGGTGTGACTGTAGGCGATTGCTCAGGGA
AGGGAGCGAAGTCATGGAGCATAAAAAGAGGGCAGCTGGCTCTGGGTGAT
GGGAAAATGTGCGTAGTCAGAAATTTTGACAACACCGCAGGAATCGCGAA
ATGCACCGAGGCATTTGAGTATCTGAGTGTGGTGCCGCATGATCCGACGG
CGGGTAAATTGACGCAGGGCGGTCCTGTGACAGCAGGAATAGAACTTGGG
TAG
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Synonyms
Publications