jgi.p|Nanoce1779_2|553346, mRNA_2913 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|553346
Unique Name	mRNA_2913
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1403
Alignment location	scaffold_7:231708..233239 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	553432
Track	FilteredModels2
ProteinId	553346

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:231708..233239 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|553346	gene_2913	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|553346	mRNA_2913-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2913	CDS_2913	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:231708..233239+
coding sequence from alignment at scaffold_7:231708..233239+

mRNA sequence

>mRNA_2913 ID=mRNA_2913|Name=jgi.p|Nanoce1779_2|553346|organism=Nannochloropsis oceanica|type=mRNA|length=1403bp
CGACCTTCAAGGTGAAAGTGTCGCAGAAAAGCCTTGCGGGGGCTCCTGAT
TTGTACTTTCTGACTCTCATAATACTCACAAATTTACCCCTAAAAAAAGT
TCACAGGTATTAAAGGGCTCATCTAGCTGCATTATCCGTCGCTCCGTGGC
ATTTCCCGAGCTGTCTTCATCTGCTGCCCAGAATCGGCCCTGCTTCACCA
TCACCAACCCCGTGGCTACGTCAACGCGGCATTTGTACCCTCTCCGCGGC
ACCACACTCTGTCGAATCACCACCCTCCCGCCGCAATCGGACCATGTCAA
CTGATAAGCTTTTCCACCCTATTAGGGAGCGGAACTACTACCTCGAAGAC
GCCCGTAAAGTCGCTGATTTTTTGCGGTCGCGAAGCAGCCACCCCGCTCC
AGAGATTGCCATTGTTCTGGGCAGTCGTCTGCAAGATTTTGAACGAGCCA
TCGAAGCCCCTGAGAAAGTGTATTATGAAGAAGTCCAAGACTTCTTCCCT
TCCTTCCCGACATGCTCCGCGACGATGGGCACGGAAGGCGCCTTCATTTT
TGGATTGGTGGACGGGGTGAGCGTGATCGTGATGCAGGGCCGATTTCACA
CGTACGAAGGGCATTCCACCCAGGCCACGGCCTTTCCCGTGCGCATCATG
AAGGAGCTGGGTGTACAAACCTTAATTCTGACGAATGCTGCGCGGGGTTT
AAGTCCGACCTTGGAGATTGGGGATGTCATGTTAGTGGTCGATCATTACA
ACACGGAACGGAGCAGCGAGACGCACCCGCTGGCAGGGATTAACCTAGAG
CATTGGGGGCCTCGTTTCCTACGATGTGATAACTTGTACGACATTAATTT
ACGCCGGCTTACCCGGCGAATTGCGAAAGAAAAACGGATCGCGCTGAAGC
AGGGTGGTTATATTTTTGTGTCGGGTCCGTCGTATGAGACGCCAATGGAG
GAGGATGGGTTGCGGAATTTGTGTGAAAAAAGGAAGGGGTGGGGGAGGGC
CACGGTGCCCGAGGTGCTGGTGGCTGATCATTGCGGCTTGAAGGTGGTGG
CATTGAGTGGAATCTATTTCGTCACGCAAGAGAACACGGAAAGGCTGGCT
GGGATTCCGCATTATGAATATGATACCGATAAGCGGGTGGCGTATGAGAT
GAAACTAAGGAGGGAGGAGGAGCATCGACAGGGGGAAATCGCCCCTAAGA
TGACGGCGTTGTTAAGAGGGTTGGTGCAGTCCTTGGGAGACACGAGGGAT
ATAGCCATGGATTTCGATGTGGCAGATATTGCCCGGTGGAGGTTTCCGAC
CACGTTGTGCGTGTCGTGGAACAAGGTGATAGTAGGCGTGATGGGCGTAG
GGATGGCGGTTAGTGTGCTGGTCACTGTGGTAGCTGAAAGAAGGCGACGA
TAG

protein sequence of jgi.p|Nanoce1779_2|553346

>mRNA_2913-protein ID=mRNA_2913-protein|Name=jgi.p|Nanoce1779_2|553346|organism=Nannochloropsis oceanica|type=polypeptide|length=370bp
MSTDKLFHPIRERNYYLEDARKVADFLRSRSSHPAPEIAIVLGSRLQDFE
RAIEAPEKVYYEEVQDFFPSFPTCSATMGTEGAFIFGLVDGVSVIVMQGR
FHTYEGHSTQATAFPVRIMKELGVQTLILTNAARGLSPTLEIGDVMLVVD
HYNTERSSETHPLAGINLEHWGPRFLRCDNLYDINLRRLTRRIAKEKRIA
LKQGGYIFVSGPSYETPMEEDGLRNLCEKRKGWGRATVPEVLVADHCGLK
VVALSGIYFVTQENTERLAGIPHYEYDTDKRVAYEMKLRREEEHRQGEIA
PKMTALLRGLVQSLGDTRDIAMDFDVADIARWRFPTTLCVSWNKVIVGVM
GVGMAVSVLVTVVAERRRR*

mRNA from alignment at scaffold_7:231708..233239+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2913 ID=mRNA_2913|Name=jgi.p|Nanoce1779_2|553346|organism=Nannochloropsis oceanica|type=mRNA|length=1532bp|location=Sequence derived from alignment at scaffold_7:231708..233239+ (Nannochloropsis oceanica)
CGACCTTCAAGGTGAAAGTGTCGCAGAAAAGCCTTGCGGGGGCTCCTGAT
TTGTACTTTCTGACTCTCATAATACTCACAAATTTACCCCTAAAAAAAGT
TCACAGGTATTAAAGGGCTCATCTAGCTGCATTATCCGTCGCTCCGTGGC
ATTTCCCGAGCTGTCTTCATCTGCTGCCCAGAATCGGCCCTGCTTCACCA
TCACCAACCCCGTGGCTACGTCAACGCGGCATTTGTACCCTCTCCGCGGC
ACCACACTCTGTCGAATCACCACCCTCCCGCCGCAATCGGACCATGTCAA
CTGATAAGCTTTTCCACCCTATTAGGGAGCGGAACTACTACCTCGAAGAC
GCCCGTAAAGTCGCTGATTTTTTGCGGTCGCGAAGCAGCCACCCCGCTCC
AGAGATTGCCATTGTTCTGGGCAGTCGTCTGCAAGATTTTGAACGAGCCA
TCGAAGCCCCTGAGAAAGTGTATTATGAAGAAGTCCAAGACTTCTTCCCT
TCCTTCCCGACATGCTCCGCGACGATGGGCACGGAAGGCGCCTTCATTTT
TGGATTGGTGGACGGGGTGAGCGTGATCGTGATGCAGGGCCGATTTCACA
CGTACGAAGGGCATTCCACCCAGGCCACGGCCTTTCCCGTGCGCATCATG
AAGGAGCTGGGTGTACAAACCTTAATTCTGACGAATGCTGCGCGGGGTTT
AAGTCCGACCTTGGAGATTGGGGATGTCATGTTAGTGGTCGATCATTACA
ACACGGAACGGAGCAGCGAGACGCACCCGCTGGCAGGGATTAACCTAGAG
CATTGGGGGCCTCGTTTCCTACGATGTGATAACTTGTACGACATTAATTT
ACGCCGGCTTACCCGGCGAATTGCGAAAGAAAAACGGATCGCGCTGAAGC
AGGGTGGTTATATTTTTGTGTCGGGTCCGTCGTATGAGACGCCAATGGAG
GAGGATGGGTTGCGGAATTTGTGTGAAAAAAGGAAGGGGTGGGGGAGGGC
GTTAATGCACTTAAAATACTGGATGGGTGCGATGGATAGAAGGGGGGGGT
ATCAACCTGGGGGGGTGTTTGACATGCTGGATCGAATGTTGAATCATTTT
GGGCTGCATGATATGGTGGTGGGGATGAGCACGGTGCCCGAGGTGCTGGT
GGCTGATCATTGCGGCTTGAAGGTGGTGGCATTGAGTGGAATCTATTTCG
TCACGCAAGAGAACACGGAAAGGCTGGCTGGGATTCCGCATTATGAATAT
GATACCGATAAGCGGGTGGCGTATGAGATGAAACTAAGGAGGGAGGAGGA
GCATCGACAGGGGGAAATCGCCCCTAAGATGACGGCGTTGTTAAGAGGGT
TGGTGCAGTCCTTGGGAGACACGAGGGATATAGCCATGGATTTCGATGTG
GCAGATATTGCCCGGTGGAGGTTTCCGACCACGTTGTGCGTGTCGTGGAA
CAAGGTGATAGTAGGCGTGATGGGCGTAGGGATGGCGGTTAGTGTGCTGG
TCACTGTGGTAGCTGAAAGAAGGCGACGATAG

Coding sequence (CDS) from alignment at scaffold_7:231708..233239+

>mRNA_2913 ID=mRNA_2913|Name=jgi.p|Nanoce1779_2|553346|organism=Nannochloropsis oceanica|type=CDS|length=2220bp|location=Sequence derived from alignment at scaffold_7:231708..233239+ (Nannochloropsis oceanica)
ATGTCAACTGATAAGCTTTTCCACCCTATTAGGGAGCGGAACTACTACCT
CGAAGACGCCCGTAAAGTCGCTGATTTTTTGCGGTCGCGAAGCAGCCACC
CCGCTCCAGAGATTGCCATTGTTCTGGGCAGTCGTCTGCAAGATTTTGAA
CGAGCCATCGAAGCCCCTGAGAAAGTGTATTATGAAGAAGTCCAAGACTT
CTTCCCTTCCTTCCCGACATGCTCCGCGACGATGGGCACGGAAGGCGCCT
TCATTTTTGGATTGGTGGACGGGGTGAGCGTGATCGTGATGCAGGGCCGA
TTTCACACGTACGAAGGGCATTCCACCCAGGCCACGGCCTTTCCCGTGCG
CATCATGAAGGAGCTGGGTGTACAAACCTTAATTCTGACGAATGCTGCGC
GGGGTTTAAGTCCGACCTTGGAGATTGGGGATGTCATGTTAGTGGTCGAT
CATTACAACACGGAACGGAGCAGCGAGACGCACCCGCTGGCAGGGATTAA
CCTAGAGCATTGGGGGCCTCGTTTCCTACGATGTGATAACTTGTACGACA
TTAATTTACGCCGGCTTACCCGGCGAATTGCGAAAGAAAAACGGATCGCG
CTGAAGCAGGGTGGTTATATTTTTGTGTCGGGTCCGTCGTATGAGACGCC
AATGGAGGAGGATGGGTTGCGGAATTTGTGTGAAAAAAGGAAGGGGTGGG
GGAGGGCCACGGTGCCCGAGGTGCTGGTGGCTGATCATTGCGGCTTGAAG
GTGGTGGCATTGAGTGGAATCTATTTCGTCACGCAAGAGAACACGGAAAG
GCTGGCTGGGATTCCGCATTATGAATATGATACCGATAAGCGGGTGGCGT
ATGAGATGAAACTAAGGAGGGAGGAGGAGCATCGACAGGGGGAAATCGCC
CCTAAGATGACGGCGTTGTTAAGAGGGTTGGTGCAGTCCTTGGGAGACAC
GAGGGATATAGCCATGGATTTCGATGTGGCAGATATTGCCCGGTGGAGGT
TTCCGACCACGTTGTGCGTGTCGTGGAACAAGGTGATAGTAGGCGTGATG
GGCGTAGGGATGGCGGTTAGTGTGCTGGTCACTGTGGTAGCTGAAAGAAG
GCGACGATAGATGTCAACTGATAAGCTTTTCCACCCTATTAGGGAGCGGA
ACTACTACCTCGAAGACGCCCGTAAAGTCGCTGATTTTTTGCGGTCGCGA
AGCAGCCACCCCGCTCCAGAGATTGCCATTGTTCTGGGCAGTCGTCTGCA
AGATTTTGAACGAGCCATCGAAGCCCCTGAGAAAGTGTATTATGAAGAAG
TCCAAGACTTCTTCCCTTCCTTCCCGACATGCTCCGCGACGATGGGCACG
GAAGGCGCCTTCATTTTTGGATTGGTGGACGGGGTGAGCGTGATCGTGAT
GCAGGGCCGATTTCACACGTACGAAGGGCATTCCACCCAGGCCACGGCCT
TTCCCGTGCGCATCATGAAGGAGCTGGGTGTACAAACCTTAATTCTGACG
AATGCTGCGCGGGGTTTAAGTCCGACCTTGGAGATTGGGGATGTCATGTT
AGTGGTCGATCATTACAACACGGAACGGAGCAGCGAGACGCACCCGCTGG
CAGGGATTAACCTAGAGCATTGGGGGCCTCGTTTCCTACGATGTGATAAC
TTGTACGACATTAATTTACGCCGGCTTACCCGGCGAATTGCGAAAGAAAA
ACGGATCGCGCTGAAGCAGGGTGGTTATATTTTTGTGTCGGGTCCGTCGT
ATGAGACGCCAATGGAGGAGGATGGGTTGCGGAATTTGTGTGAAAAAAGG
AAGGGGTGGGGGAGGGCCACGGTGCCCGAGGTGCTGGTGGCTGATCATTG
CGGCTTGAAGGTGGTGGCATTGAGTGGAATCTATTTCGTCACGCAAGAGA
ACACGGAAAGGCTGGCTGGGATTCCGCATTATGAATATGATACCGATAAG
CGGGTGGCGTATGAGATGAAACTAAGGAGGGAGGAGGAGCATCGACAGGG
GGAAATCGCCCCTAAGATGACGGCGTTGTTAAGAGGGTTGGTGCAGTCCT
TGGGAGACACGAGGGATATAGCCATGGATTTCGATGTGGCAGATATTGCC
CGGTGGAGGTTTCCGACCACGTTGTGCGTGTCGTGGAACAAGGTGATAGT
AGGCGTGATGGGCGTAGGGATGGCGGTTAGTGTGCTGGTCACTGTGGTAG
CTGAAAGAAGGCGACGATAG

Synonyms

Publications