jgi.p|Nanoce1779_2|583785, mRNA_2912 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583785
Unique NamemRNA_2912
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1309
Alignment locationscaffold_7:230073..231707 +

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Properties
Property NameValue
TranscriptId583871
TrackFilteredModels2
ProteinId583785
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:230073..231707 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583785gene_2912Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583785mRNA_2912-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2912CDS_2912Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2912 ID=mRNA_2912|Name=jgi.p|Nanoce1779_2|583785|organism=Nannochloropsis oceanica|type=mRNA|length=1309bp
AGGCTAGCCCAGAATCATAAGCATCGCCAAGTTTTCGCACACAACCATGG
CGCTGCAACAAGGCATCACGATGGCCAAGAAGCTCCAGTCTGCCGTTGAC
AACGACCAACTCGCGGAGGCCTCCGCGATCCTAGGGGAACTCAAGGTCCT
GCTCACGGGCTTTGACTCCCTCCCACCCATGAACCAACCCTCCCCCCACG
CACCAGAAGAACGTGCCTTGGGTCGCCAAGTGCTTGAACAAGCCGTCTTC
CTCGCCCTGAAACAGCAAGACAAAACCGCCTTCCAACGCCAAATGGCGCA
ACTGAAGCCTTATTATCAAGATGCTGCAGGACTAGGGCTGCCGGAGTCGA
CGCTGCGCATGCCTATCCTAGGACTAAATTTATTGTTTTTGCTCGTCGAA
AACCGCCTGGCCGAGTTCCACTCTGAGCTCGAACATCTGACGGAAGCTGA
ACGTGCGAGCACCTACGTCTCCTTCCCCATTTTGGTGGAGCAACAGCTGA
TGGTTGGGTCATACCACAAGGTGCTGGAATCAAGGACTCACACCCCTCAC
CCCGGCTATGCCTTTTTCATGTCCCTGCTCGTTGATACGGTACGGGACGC
CGTAGCGGACTGCTCTGAGACAGCATATGTACAATTGAGCGTGGCGGCGG
CCAAGGATATCATGTTACTGGATTCAGATGCCGCGCTGGCGGAGTACGCG
GCGACCAAGCACCCGGATTGGAAGGTGGGAGGAGATGGGTTTGTCCATTT
TGGGAAGGACCATGGGCCGAAGCAGAGCAAGGCGGCGGATGTACCCTCGT
TGCGCTTGATTGCCGAGACCTTGTCGTATGCAACGGAATTGGAGAGGATC
GTATAATACTTGGGAACAAGGGGACGTTTGGCTTTTGAAAGGAGTGCGGA
GGTTGGGAGAGCATGTGAAATGTGAAGTTACAGCACGGAGAAACGATGAA
AAGGAACATAGGCAATGCGGACTCGCGGATAGTGGATGGAAAAAAACACA
TGGCATTGGCATTTATTCTGTTGCTTTCTATTGTTGATAATATTACTGAA
CAGATTCTTGTTGGAGCATCAACATGTCCTGGCACACGTGGTCCCGCAGG
GACGGCAAAAAGGGTGGAGGGAGGGCTGAAAGGCGAGGTATGAATGAAAA
AATCATTTTCGATTCGAGGTCTCAGAACTCACGCAACCACAATCACGAGG
ACCAATATTGTGTCAAATATTTCTGCGAACCTGCTTATTATGTTGTGCAT
TGCATGGCAAGTGGGATGGTCTTGGCCCATGCGTGGCAGCAGGGCTTGCA
TGTTGTTGG
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protein sequence of jgi.p|Nanoce1779_2|583785

>mRNA_2912-protein ID=mRNA_2912-protein|Name=jgi.p|Nanoce1779_2|583785|organism=Nannochloropsis oceanica|type=polypeptide|length=270bp
MALQQGITMAKKLQSAVDNDQLAEASAILGELKVLLTGFDSLPPMNQPSP
HAPEERALGRQVLEQAVFLALKQQDKTAFQRQMAQLKPYYQDAAGLGLPE
STLRMPILGLNLLFLLVENRLAEFHSELEHLTEAERASTYVSFPILVEQQ
LMVGSYHKVLESRTHTPHPGYAFFMSLLVDTVRDAVADCSETAYVQLSVA
AAKDIMLLDSDAALAEYAATKHPDWKVGGDGFVHFGKDHGPKQSKAADVP
SLRLIAETLSYATELERIV*
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mRNA from alignment at scaffold_7:230073..231707+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2912 ID=mRNA_2912|Name=jgi.p|Nanoce1779_2|583785|organism=Nannochloropsis oceanica|type=mRNA|length=1635bp|location=Sequence derived from alignment at scaffold_7:230073..231707+ (Nannochloropsis oceanica)
AGGCTAGCCCAGAATCATAAGCATCGCCAAGTTTTCGCACACAACCATGG
CGCTGCAACAAGGCATCACGGTACGCGTTACTAAAGGGTGGGTGTGGGAG
GGGTGTTTGGATGCTGCTAGATGAGCGATTGTTGGGTTCGGGAATACAAG
CTGCTCGCTTTCCCTCATTCCCCCCCTCCCTTCCTCGTCTTGGACCCGCG
ACGCCATCTCGTGGTCGATACAGCTTTGCGAGGAATGATTGAGACGTACA
AGATGAGATGCTGCACAAACTGGCCCTGGAGATTCTGAACGCTATTTGCA
AAGCGTCAGTCTGGTCCCGCTTCCCTTTTCTCGTTTCTTCCCACTTAGCC
CATTTCTCTCTCCTCTACGCATCGACACACTCTTCCCCCATCACAGATGG
CCAAGAAGCTCCAGTCTGCCGTTGACAACGACCAACTCGCGGAGGCCTCC
GCGATCCTAGGGGAACTCAAGGTCCTGCTCACGGGCTTTGACTCCCTCCC
ACCCATGAACCAACCCTCCCCCCACGCACCAGAAGAACGTGCCTTGGGTC
GCCAAGTGCTTGAACAAGCCGTCTTCCTCGCCCTGAAACAGCAAGACAAA
ACCGCCTTCCAACGCCAAATGGCGCAACTGAAGCCTTATTATCAAGATGC
TGCAGGACTAGGGCTGCCGGAGTCGACGCTGCGCATGCCTATCCTAGGAC
TAAATTTATTGTTTTTGCTCGTCGAAAACCGCCTGGCCGAGTTCCACTCT
GAGCTCGAACATCTGACGGAAGCTGAACGTGCGAGCACCTACGTCTCCTT
CCCCATTTTGGTGGAGCAACAGCTGATGGTTGGGTCATACCACAAGGTGC
TGGAATCAAGGACTCACACCCCTCACCCCGGCTATGCCTTTTTCATGTCC
CTGCTCGTTGATACGGTACGGGACGCCGTAGCGGACTGCTCTGAGACAGC
ATATGTACAATTGAGCGTGGCGGCGGCCAAGGATATCATGTTACTGGATT
CAGATGCCGCGCTGGCGGAGTACGCGGCGACCAAGCACCCGGATTGGAAG
GTGGGAGGAGATGGGTTTGTCCATTTTGGGAAGGACCATGGGCCGAAGCA
GAGCAAGGCGGCGGATGTACCCTCGTTGCGCTTGATTGCCGAGACCTTGT
CGTATGCAACGGAATTGGAGAGGATCGTATAATACTTGGGAACAAGGGGA
CGTTTGGCTTTTGAAAGGAGTGCGGAGGTTGGGAGAGCATGTGAAATGTG
AAGTTACAGCACGGAGAAACGATGAAAAGGAACATAGGCAATGCGGACTC
GCGGATAGTGGATGGAAAAAAACACATGGCATTGGCATTTATTCTGTTGC
TTTCTATTGTTGATAATATTACTGAACAGATTCTTGTTGGAGCATCAACA
TGTCCTGGCACACGTGGTCCCGCAGGGACGGCAAAAAGGGTGGAGGGAGG
GCTGAAAGGCGAGGTATGAATGAAAAAATCATTTTCGATTCGAGGTCTCA
GAACTCACGCAACCACAATCACGAGGACCAATATTGTGTCAAATATTTCT
GCGAACCTGCTTATTATGTTGTGCATTGCATGGCAAGTGGGATGGTCTTG
GCCCATGCGTGGCAGCAGGGCTTGCATGTTGTTGG
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Coding sequence (CDS) from alignment at scaffold_7:230073..231707+

>mRNA_2912 ID=mRNA_2912|Name=jgi.p|Nanoce1779_2|583785|organism=Nannochloropsis oceanica|type=CDS|length=1620bp|location=Sequence derived from alignment at scaffold_7:230073..231707+ (Nannochloropsis oceanica)
ATGGCGCTGCAACAAGGCATCACGATGGCCAAGAAGCTCCAGTCTGCCGT
TGACAACGACCAACTCGCGGAGGCCTCCGCGATCCTAGGGGAACTCAAGG
TCCTGCTCACGGGCTTTGACTCCCTCCCACCCATGAACCAACCCTCCCCC
CACGCACCAGAAGAACGTGCCTTGGGTCGCCAAGTGCTTGAACAAGCCGT
CTTCCTCGCCCTGAAACAGCAAGACAAAACCGCCTTCCAACGCCAAATGG
CGCAACTGAAGCCTTATTATCAAGATGCTGCAGGACTAGGGCTGCCGGAG
TCGACGCTGCGCATGCCTATCCTAGGACTAAATTTATTGTTTTTGCTCGT
CGAAAACCGCCTGGCCGAGTTCCACTCTGAGCTCGAACATCTGACGGAAG
CTGAACGTGCGAGCACCTACGTCTCCTTCCCCATTTTGGTGGAGCAACAG
CTGATGGTTGGGTCATACCACAAGGTGCTGGAATCAAGGACTCACACCCC
TCACCCCGGCTATGCCTTTTTCATGTCCCTGCTCGTTGATACGGTACGGG
ACGCCGTAGCGGACTGCTCTGAGACAGCATATGTACAATTGAGCGTGGCG
GCGGCCAAGGATATCATGTTACTGGATTCAGATGCCGCGCTGGCGGAGTA
CGCGGCGACCAAGCACCCGGATTGGAAGGTGGGAGGAGATGGGTTTGTCC
ATTTTGGGAAGGACCATGGGCCGAAGCAGAGCAAGGCGGCGGATGTACCC
TCGTTGCGCTTGATTGCCGAGACCTTGTCGTATGCAACGGAATTGGAGAG
GATCGTATAAATGGCGCTGCAACAAGGCATCACGATGGCCAAGAAGCTCC
AGTCTGCCGTTGACAACGACCAACTCGCGGAGGCCTCCGCGATCCTAGGG
GAACTCAAGGTCCTGCTCACGGGCTTTGACTCCCTCCCACCCATGAACCA
ACCCTCCCCCCACGCACCAGAAGAACGTGCCTTGGGTCGCCAAGTGCTTG
AACAAGCCGTCTTCCTCGCCCTGAAACAGCAAGACAAAACCGCCTTCCAA
CGCCAAATGGCGCAACTGAAGCCTTATTATCAAGATGCTGCAGGACTAGG
GCTGCCGGAGTCGACGCTGCGCATGCCTATCCTAGGACTAAATTTATTGT
TTTTGCTCGTCGAAAACCGCCTGGCCGAGTTCCACTCTGAGCTCGAACAT
CTGACGGAAGCTGAACGTGCGAGCACCTACGTCTCCTTCCCCATTTTGGT
GGAGCAACAGCTGATGGTTGGGTCATACCACAAGGTGCTGGAATCAAGGA
CTCACACCCCTCACCCCGGCTATGCCTTTTTCATGTCCCTGCTCGTTGAT
ACGGTACGGGACGCCGTAGCGGACTGCTCTGAGACAGCATATGTACAATT
GAGCGTGGCGGCGGCCAAGGATATCATGTTACTGGATTCAGATGCCGCGC
TGGCGGAGTACGCGGCGACCAAGCACCCGGATTGGAAGGTGGGAGGAGAT
GGGTTTGTCCATTTTGGGAAGGACCATGGGCCGAAGCAGAGCAAGGCGGC
GGATGTACCCTCGTTGCGCTTGATTGCCGAGACCTTGTCGTATGCAACGG
AATTGGAGAGGATCGTATAA
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Synonyms
Publications