jgi.p|Nanoce1779_2|583780, mRNA_2910 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583780
Unique NamemRNA_2910
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1128
Alignment locationscaffold_7:224206..225333 +

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Properties
Property NameValue
TranscriptId583866
TrackFilteredModels2
ProteinId583780
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:224206..225333 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583780gene_2910Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583780mRNA_2910-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2910CDS_2910Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2910 ID=mRNA_2910|Name=jgi.p|Nanoce1779_2|583780|organism=Nannochloropsis oceanica|type=mRNA|length=1128bp
GGGGAGGGGGGGGGAGGATTTATAAATGGAGACGGAGCCAGAAACCCAGG
GCAATGGGTCGATGAAGGTGGAGCGGGTACTGTGCGGGGGTTGGTTAGCA
ATGGCCATGGCGCTTTGGTCCATGGATCATCGCCTTGTCAAATTGTGCCT
AATACTCTGAATGACGACGGCAATCGGAGAGATTGTGGTGGGTTTGCTTC
TCGGCCAAGCATCTTTGCCTCCCCAAGCAAGCCGGGGCGTGCTTACTCTC
CTTTACGCTCCCACCCTATGCTCACCGACGAGCAGCAGCAGGAGCAACGG
CAACAACGTCGACCACCCAAGCCCGTGATTGGACGCAAGCGTGTCCTTCT
TGGAGCAAATTATCAATTGGCTGATTCTGTCTTGCCCAGCCCTCATTCGC
ACGACATTTCACACAATTCACGCCTTGCTCTCATTGCATCCCGCCACGTC
CATATTCACCCCAATGGCTATTTCAATGCCTCAGCCGGTACAGAACGTGT
ACTCTGCCGGTGGAAACCCCCACCAGTAGGAGCTGGGCTACCGTCAATGG
ATGAGATTCAGGCGTTGCTCGCTCAATTTGACCATAAATATGAAGAGCAG
TTACTGTGGGCGATATATGAGGGAGGATGGGAGTTGTCTTTGACGCGGAC
TCGATTTATTCGAATGCTGAATTCGAATAAGCCTTTGTTGGACAATGACG
AGATGGGCGATCCGATACCACAGTTGGAGCAGTTCACAGCCTGGGACGCT
ACCATTTTTGAGGAGGCGATGCGTATGAATTGGAAGGATTTTTACAGGGC
CTCTATCATGGTTCGGAAGAGTACCAAGAGCTGCGTGGCTTTCTATTACA
ACACATGGAAACACGATGTGGCCTACAAACGCGTAAAGTCTGAGCGGGTG
CCCTCGCCTACCAAAATGGGATATGTGTAAAAATAGGAAGCCTCTGTATT
AATCTACAACAAACTTCATGAGGAAATATTCAATAGCTAATTTTGTTTTT
TTCGGATTGTGATTAAATTCTTTCCTCACAATGGAAATGCGAAGGTTTAT
TGGTGGTCAACGGTCATGGCAGCTAGAATGAGAGAAGAGAGAAGAAATAG
GAAATGCATAGAAGGCCAGCCAAGACAT
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protein sequence of jgi.p|Nanoce1779_2|583780

>mRNA_2910-protein ID=mRNA_2910-protein|Name=jgi.p|Nanoce1779_2|583780|organism=Nannochloropsis oceanica|type=polypeptide|length=221bp
MLTDEQQQEQRQQRRPPKPVIGRKRVLLGANYQLADSVLPSPHSHDISHN
SRLALIASRHVHIHPNGYFNASAGTERVLCRWKPPPVGAGLPSMDEIQAL
LAQFDHKYEEQLLWAIYEGGWELSLTRTRFIRMLNSNKPLLDNDEMGDPI
PQLEQFTAWDATIFEEAMRMNWKDFYRASIMVRKSTKSCVAFYYNTWKHD
VAYKRVKSERVPSPTKMGYV*
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mRNA from alignment at scaffold_7:224206..225333+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2910 ID=mRNA_2910|Name=jgi.p|Nanoce1779_2|583780|organism=Nannochloropsis oceanica|type=mRNA|length=1128bp|location=Sequence derived from alignment at scaffold_7:224206..225333+ (Nannochloropsis oceanica)
GGGGAGGGGGGGGGAGGATTTATAAATGGAGACGGAGCCAGAAACCCAGG
GCAATGGGTCGATGAAGGTGGAGCGGGTACTGTGCGGGGGTTGGTTAGCA
ATGGCCATGGCGCTTTGGTCCATGGATCATCGCCTTGTCAAATTGTGCCT
AATACTCTGAATGACGACGGCAATCGGAGAGATTGTGGTGGGTTTGCTTC
TCGGCCAAGCATCTTTGCCTCCCCAAGCAAGCCGGGGCGTGCTTACTCTC
CTTTACGCTCCCACCCTATGCTCACCGACGAGCAGCAGCAGGAGCAACGG
CAACAACGTCGACCACCCAAGCCCGTGATTGGACGCAAGCGTGTCCTTCT
TGGAGCAAATTATCAATTGGCTGATTCTGTCTTGCCCAGCCCTCATTCGC
ACGACATTTCACACAATTCACGCCTTGCTCTCATTGCATCCCGCCACGTC
CATATTCACCCCAATGGCTATTTCAATGCCTCAGCCGGTACAGAACGTGT
ACTCTGCCGGTGGAAACCCCCACCAGTAGGAGCTGGGCTACCGTCAATGG
ATGAGATTCAGGCGTTGCTCGCTCAATTTGACCATAAATATGAAGAGCAG
TTACTGTGGGCGATATATGAGGGAGGATGGGAGTTGTCTTTGACGCGGAC
TCGATTTATTCGAATGCTGAATTCGAATAAGCCTTTGTTGGACAATGACG
AGATGGGCGATCCGATACCACAGTTGGAGCAGTTCACAGCCTGGGACGCT
ACCATTTTTGAGGAGGCGATGCGTATGAATTGGAAGGATTTTTACAGGGC
CTCTATCATGGTTCGGAAGAGTACCAAGAGCTGCGTGGCTTTCTATTACA
ACACATGGAAACACGATGTGGCCTACAAACGCGTAAAGTCTGAGCGGGTG
CCCTCGCCTACCAAAATGGGATATGTGTAAAAATAGGAAGCCTCTGTATT
AATCTACAACAAACTTCATGAGGAAATATTCAATAGCTAATTTTGTTTTT
TTCGGATTGTGATTAAATTCTTTCCTCACAATGGAAATGCGAAGGTTTAT
TGGTGGTCAACGGTCATGGCAGCTAGAATGAGAGAAGAGAGAAGAAATAG
GAAATGCATAGAAGGCCAGCCAAGACAT
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Coding sequence (CDS) from alignment at scaffold_7:224206..225333+

>mRNA_2910 ID=mRNA_2910|Name=jgi.p|Nanoce1779_2|583780|organism=Nannochloropsis oceanica|type=CDS|length=663bp|location=Sequence derived from alignment at scaffold_7:224206..225333+ (Nannochloropsis oceanica)
ATGCTCACCGACGAGCAGCAGCAGGAGCAACGGCAACAACGTCGACCACC
CAAGCCCGTGATTGGACGCAAGCGTGTCCTTCTTGGAGCAAATTATCAAT
TGGCTGATTCTGTCTTGCCCAGCCCTCATTCGCACGACATTTCACACAAT
TCACGCCTTGCTCTCATTGCATCCCGCCACGTCCATATTCACCCCAATGG
CTATTTCAATGCCTCAGCCGGTACAGAACGTGTACTCTGCCGGTGGAAAC
CCCCACCAGTAGGAGCTGGGCTACCGTCAATGGATGAGATTCAGGCGTTG
CTCGCTCAATTTGACCATAAATATGAAGAGCAGTTACTGTGGGCGATATA
TGAGGGAGGATGGGAGTTGTCTTTGACGCGGACTCGATTTATTCGAATGC
TGAATTCGAATAAGCCTTTGTTGGACAATGACGAGATGGGCGATCCGATA
CCACAGTTGGAGCAGTTCACAGCCTGGGACGCTACCATTTTTGAGGAGGC
GATGCGTATGAATTGGAAGGATTTTTACAGGGCCTCTATCATGGTTCGGA
AGAGTACCAAGAGCTGCGTGGCTTTCTATTACAACACATGGAAACACGAT
GTGGCCTACAAACGCGTAAAGTCTGAGCGGGTGCCCTCGCCTACCAAAAT
GGGATATGTGTAA
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Synonyms
Publications