jgi.p|Nanoce1779_2|583774, mRNA_2908 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583774
Unique NamemRNA_2908
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1570
Alignment locationscaffold_7:218699..220460 -

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Properties
Property NameValue
TranscriptId583860
TrackFilteredModels2
ProteinId583774
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:218699..220460 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583774gene_2908Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583774mRNA_2908-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2908CDS_2908Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2908 ID=mRNA_2908|Name=jgi.p|Nanoce1779_2|583774|organism=Nannochloropsis oceanica|type=mRNA|length=1570bp
CAACAGTGCCATGGCATCGCACGACAACGGCGGCGTCAAGGCCTGCCCCA
TGCCAGTGCGAAGGCACCGGCCAGCCTCCTCGATAATGGAGAGCCGAAGT
GACGAGCCTGAAACAGTGATGATGAAGGGAGCCAACGCCAACGCAACACT
CGCAGCGACGACCACATCGGCACCCGCCACAGGGGCCTCGCCCACCACGA
CGATGACAACGGCATCGACAAGCTATCCGGCTGCCACCTCTGCCCGTGCC
GGGCAAAGCGGTGCCACCATGGGACAAGACAGCCTCATCCACGCCCTCGC
AGGCGGTTTAGGCAGTTCCATTGCACTTGCCCTCACCTACCCCTTGGACC
AAATCCGCACGTTTCAACAAGTGAACGACAATACCGAAGATGACGAGTAT
ATCAACCACGGCGGCCGCAGCCCCTTGTTTACCCAAGAAACATGCCCCTC
CACCCAGTGGGCACGCCTCGCTCCCCTCCTCCGTCCCTGGCGCAGCGCCA
CTGTCCTGGTACAAAAACACGGCCTGAGCGCGCTCTATCGAGGCATTATC
CCCGTCCTCATCTCTATGGGTCTCAGCAATGCCATCTTCTTCTTCGTGAA
CAGCTTGCTCAAAGCCGTCCTGACGAGATATAGACAAAAGACCGGGAAAT
CCCTTGGGTATTTTGGTTATCTCGCTACCAGCACTATAGCTGGTGTGCTG
AACGTGTTGTTGACTACTCCTTTATGGGTGGCAAGTATGCGTGCCAAGCT
GAGTAAAGATCAGGGGTGGGATATCACGGCGATTATGCTGCGGATTTATC
GGGAGGAAGGGGTGCTGTCGTTGTGGAATGGCACCATGCCCTCCCTCCTC
TTGGTGTGCAACCCGGTGTTGCAGCATTTCGTCTACGACCAGCTCAAGCG
TCGAACGCTCACAGCTCGTCGGGGCAAGGTAGCGGGAACAGTAGCAGCAG
CAGCAGCTGTGGCGTTGACCTCGTTGGAAGCGTTTTATTTTGGAGCCATT
GGCAAGTTTGTGGCGACCATCGTTTCGTACCCTTTGCAGGTGGCTCAGAG
CCGGCTCCGGCAGCAGTCGCAAAAGCAAAAGCAGGAAAATTCCTCTGCTA
CTGCTACTATTGCTACTGCTGGCGCTGGTGTAGCTGCGTCTGCTCCTGCT
GCTGTTGAGGGGGAAGAAGATCTGTTAGCGAGGAGTGCGGGGCAGTATAC
CGGGACTGTGGATTGTCTGGTGGATTTGTGGACGAGGAAGGGCTTGGCGG
GTTTGTTTCAGGGATTGGAGTCCAAGCTGCTGCAGACTGTGTTGACCAGT
GCCTTCATGTTTTTGGCGTACGAAAATATATACAAGGCGACGAAGCATTT
TGTTGAAGTTGGGGCCAGGGAGAAGAGGGGCCGTTTGGTATAGGGGGAGG
AAGGGAGGAGAGTGAGGGTTTTTGAGACTGAGACATGGGGACTAAGCAGG
GAAAGTAAAAGTTATGTGTACCTAAATCATAGTCAAGGAGGAAAAATGTA
CAGTCACGTGTGCGGCCAAAGATCGACAAAAACTGTAAACGATGACGCGC
GCTGATGCGTGATTCCCAGC
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protein sequence of jgi.p|Nanoce1779_2|583774

>mRNA_2908-protein ID=mRNA_2908-protein|Name=jgi.p|Nanoce1779_2|583774|organism=Nannochloropsis oceanica|type=polypeptide|length=461bp
MASHDNGGVKACPMPVRRHRPASSIMESRSDEPETVMMKGANANATLAAT
TTSAPATGASPTTTMTTASTSYPAATSARAGQSGATMGQDSLIHALAGGL
GSSIALALTYPLDQIRTFQQVNDNTEDDEYINHGGRSPLFTQETCPSTQW
ARLAPLLRPWRSATVLVQKHGLSALYRGIIPVLISMGLSNAIFFFVNSLL
KAVLTRYRQKTGKSLGYFGYLATSTIAGVLNVLLTTPLWVASMRAKLSKD
QGWDITAIMLRIYREEGVLSLWNGTMPSLLLVCNPVLQHFVYDQLKRRTL
TARRGKVAGTVAAAAAVALTSLEAFYFGAIGKFVATIVSYPLQVAQSRLR
QQSQKQKQENSSATATIATAGAGVAASAPAAVEGEEDLLARSAGQYTGTV
DCLVDLWTRKGLAGLFQGLESKLLQTVLTSAFMFLAYENIYKATKHFVEV
GAREKRGRLV*
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mRNA from alignment at scaffold_7:218699..220460-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2908 ID=mRNA_2908|Name=jgi.p|Nanoce1779_2|583774|organism=Nannochloropsis oceanica|type=mRNA|length=1762bp|location=Sequence derived from alignment at scaffold_7:218699..220460- (Nannochloropsis oceanica)
CAACAGTGCCATGGCATCGCACGACAACGGCGGCGTCAAGGCCTGCCCCA
TGCCAGTGCGAAGGCACCGGCCAGCCTCCTCGATAATGGAGAGCCGAAGT
GACGAGCCTGAAACAGTGATGATGAAGGGAGCCAACGCCAACGCAACACT
CGCAGCGACGACCACATCGGCACCCGCCACAGGGGCCTCGCCCACCACGA
CGATGACAACGGCATCGACAAGCTATCCGGCTGCCACCTCTGCCCGTGCC
GGGCAAGTAAGTACTGTAGGAAGGTTGGGAAAGAATGTGCGATGCACAGT
ATATGGGCCCCGCACTTCACCTAATGCTGGCTGCCTACTGCATCCCAGAA
TCAGAACACAAATTTCAACCAACTCATTCCTTCTCACTCACTCTCTCTTC
CCGCCTCTTGTTTATTTTCCCTATTCATTCCGTTCCCCCCCCCATCAGAG
CGGTGCCACCATGGGACAAGACAGCCTCATCCACGCCCTCGCAGGCGGTT
TAGGCAGTTCCATTGCACTTGCCCTCACCTACCCCTTGGACCAAATCCGC
ACGTTTCAACAAGTGAACGACAATACCGAAGATGACGAGTATATCAACCA
CGGCGGCCGCAGCCCCTTGTTTACCCAAGAAACATGCCCCTCCACCCAGT
GGGCACGCCTCGCTCCCCTCCTCCGTCCCTGGCGCAGCGCCACTGTCCTG
GTACAAAAACACGGCCTGAGCGCGCTCTATCGAGGCATTATCCCCGTCCT
CATCTCTATGGGTCTCAGCAATGCCATCTTCTTCTTCGTGAACAGCTTGC
TCAAAGCCGTCCTGACGAGATATAGACAAAAGACCGGGAAATCCCTTGGG
TATTTTGGTTATCTCGCTACCAGCACTATAGCTGGTGTGCTGAACGTGTT
GTTGACTACTCCTTTATGGGTGGCAAGTATGCGTGCCAAGCTGAGTAAAG
ATCAGGGGTGGGATATCACGGCGATTATGCTGCGGATTTATCGGGAGGAA
GGGGTGCTGTCGTTGTGGAATGGCACCATGCCCTCCCTCCTCTTGGTGTG
CAACCCGGTGTTGCAGCATTTCGTCTACGACCAGCTCAAGCGTCGAACGC
TCACAGCTCGTCGGGGCAAGGTAGCGGGAACAGTAGCAGCAGCAGCAGCT
GTGGCGTTGACCTCGTTGGAAGCGTTTTATTTTGGAGCCATTGGCAAGTT
TGTGGCGACCATCGTTTCGTACCCTTTGCAGGTGGCTCAGAGCCGGCTCC
GGCAGCAGTCGCAAAAGCAAAAGCAGGAAAATTCCTCTGCTACTGCTACT
ATTGCTACTGCTGGCGCTGGTGTAGCTGCGTCTGCTCCTGCTGCTGTTGA
GGGGGAAGAAGATCTGTTAGCGAGGAGTGCGGGGCAGTATACCGGGACTG
TGGATTGTCTGGTGGATTTGTGGACGAGGAAGGGCTTGGCGGGTTTGTTT
CAGGGATTGGAGTCCAAGCTGCTGCAGACTGTGTTGACCAGTGCCTTCAT
GTTTTTGGCGTACGAAAATATATACAAGGCGACGAAGCATTTTGTTGAAG
TTGGGGCCAGGGAGAAGAGGGGCCGTTTGGTATAGGGGGAGGAAGGGAGG
AGAGTGAGGGTTTTTGAGACTGAGACATGGGGACTAAGCAGGGAAAGTAA
AAGTTATGTGTACCTAAATCATAGTCAAGGAGGAAAAATGTACAGTCACG
TGTGCGGCCAAAGATCGACAAAAACTGTAAACGATGACGCGCGCTGATGC
GTGATTCCCAGC
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Coding sequence (CDS) from alignment at scaffold_7:218699..220460-

>mRNA_2908 ID=mRNA_2908|Name=jgi.p|Nanoce1779_2|583774|organism=Nannochloropsis oceanica|type=CDS|length=2766bp|location=Sequence derived from alignment at scaffold_7:218699..220460- (Nannochloropsis oceanica)
AGCGGTGCCACCATGGGACAAGACAGCCTCATCCACGCCCTCGCAGGCGG
TTTAGGCAGTTCCATTGCACTTGCCCTCACCTACCCCTTGGACCAAATCC
GCACGTTTCAACAAGTGAACGACAATACCGAAGATGACGAGTATATCAAC
CACGGCGGCCGCAGCCCCTTGTTTACCCAAGAAACATGCCCCTCCACCCA
GTGGGCACGCCTCGCTCCCCTCCTCCGTCCCTGGCGCAGCGCCACTGTCC
TGGTACAAAAACACGGCCTGAGCGCGCTCTATCGAGGCATTATCCCCGTC
CTCATCTCTATGGGTCTCAGCAATGCCATCTTCTTCTTCGTGAACAGCTT
GCTCAAAGCCGTCCTGACGAGATATAGACAAAAGACCGGGAAATCCCTTG
GGTATTTTGGTTATCTCGCTACCAGCACTATAGCTGGTGTGCTGAACGTG
TTGTTGACTACTCCTTTATGGGTGGCAAGTATGCGTGCCAAGCTGAGTAA
AGATCAGGGGTGGGATATCACGGCGATTATGCTGCGGATTTATCGGGAGG
AAGGGGTGCTGTCGTTGTGGAATGGCACCATGCCCTCCCTCCTCTTGGTG
TGCAACCCGGTGTTGCAGCATTTCGTCTACGACCAGCTCAAGCGTCGAAC
GCTCACAGCTCGTCGGGGCAAGGTAGCGGGAACAGTAGCAGCAGCAGCAG
CTGTGGCGTTGACCTCGTTGGAAGCGTTTTATTTTGGAGCCATTGGCAAG
TTTGTGGCGACCATCGTTTCGTACCCTTTGCAGGTGGCTCAGAGCCGGCT
CCGGCAGCAGTCGCAAAAGCAAAAGCAGGAAAATTCCTCTGCTACTGCTA
CTATTGCTACTGCTGGCGCTGGTGTAGCTGCGTCTGCTCCTGCTGCTGTT
GAGGGGGAAGAAGATCTGTTAGCGAGGAGTGCGGGGCAGTATACCGGGAC
TGTGGATTGTCTGGTGGATTTGTGGACGAGGAAGGGCTTGGCGGGTTTGT
TTCAGGGATTGGAGTCCAAGCTGCTGCAGACTGTGTTGACCAGTGCCTTC
ATGTTTTTGGCGTACGAAAATATATACAAGGCGACGAAGCATTTTGTTGA
AGTTGGGGCCAGGGAGAAGAGGGGCCGTTTGGTATAGATGGCATCGCACG
ACAACGGCGGCGTCAAGGCCTGCCCCATGCCAGTGCGAAGGCACCGGCCA
GCCTCCTCGATAATGGAGAGCCGAAGTGACGAGCCTGAAACAGTGATGAT
GAAGGGAGCCAACGCCAACGCAACACTCGCAGCGACGACCACATCGGCAC
CCGCCACAGGGGCCTCGCCCACCACGACGATGACAACGGCATCGACAAGC
TATCCGGCTGCCACCTCTGCCCGTGCCGGGCAAAGCGGTGCCACCATGGG
ACAAGACAGCCTCATCCACGCCCTCGCAGGCGGTTTAGGCAGTTCCATTG
CACTTGCCCTCACCTACCCCTTGGACCAAATCCGCACGTTTCAACAAGTG
AACGACAATACCGAAGATGACGAGTATATCAACCACGGCGGCCGCAGCCC
CTTGTTTACCCAAGAAACATGCCCCTCCACCCAGTGGGCACGCCTCGCTC
CCCTCCTCCGTCCCTGGCGCAGCGCCACTGTCCTGGTACAAAAACACGGC
CTGAGCGCGCTCTATCGAGGCATTATCCCCGTCCTCATCTCTATGGGTCT
CAGCAATGCCATCTTCTTCTTCGTGAACAGCTTGCTCAAAGCCGTCCTGA
CGAGATATAGACAAAAGACCGGGAAATCCCTTGGGTATTTTGGTTATCTC
GCTACCAGCACTATAGCTGGTGTGCTGAACGTGTTGTTGACTACTCCTTT
ATGGGTGGCAAGTATGCGTGCCAAGCTGAGTAAAGATCAGGGGTGGGATA
TCACGGCGATTATGCTGCGGATTTATCGGGAGGAAGGGGTGCTGTCGTTG
TGGAATGGCACCATGCCCTCCCTCCTCTTGGTGTGCAACCCGGTGTTGCA
GCATTTCGTCTACGACCAGCTCAAGCGTCGAACGCTCACAGCTCGTCGGG
GCAAGGTAGCGGGAACAGTAGCAGCAGCAGCAGCTGTGGCGTTGACCTCG
TTGGAAGCGTTTTATTTTGGAGCCATTGGCAAGTTTGTGGCGACCATCGT
TTCGTACCCTTTGCAGGTGGCTCAGAGCCGGCTCCGGCAGCAGTCGCAAA
AGCAAAAGCAGGAAAATTCCTCTGCTACTGCTACTATTGCTACTGCTGGC
GCTGGTGTAGCTGCGTCTGCTCCTGCTGCTGTTGAGGGGGAAGAAGATCT
GTTAGCGAGGAGTGCGGGGCAGTATACCGGGACTGTGGATTGTCTGGTGG
ATTTGTGGACGAGGAAGGGCTTGGCGGGTTTGTTTCAGGGATTGGAGTCC
AAGCTGCTGCAGACTGTGTTGACCAGTGCCTTCATGTTTTTGGCGTACGA
AAATATATACAAGGCGACGAAGCATTTTGTTGAAGTTGGGGCCAGGGAGA
AGAGGGGCCGTTTGGTATAGATGGCATCGCACGACAACGGCGGCGTCAAG
GCCTGCCCCATGCCAGTGCGAAGGCACCGGCCAGCCTCCTCGATAATGGA
GAGCCGAAGTGACGAGCCTGAAACAGTGATGATGAAGGGAGCCAACGCCA
ACGCAACACTCGCAGCGACGACCACATCGGCACCCGCCACAGGGGCCTCG
CCCACCACGACGATGACAACGGCATCGACAAGCTATCCGGCTGCCACCTC
TGCCCGTGCCGGGCAA
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Synonyms
Publications