jgi.p|Nanoce1779_2|583772, mRNA_2907 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583772
Unique NamemRNA_2907
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length389
Alignment locationscaffold_7:218243..218631 -

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Properties
Property NameValue
TranscriptId583858
TrackFilteredModels2
ProteinId583772
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:218243..218631 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583772gene_2907Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583772mRNA_2907-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2907CDS_2907Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2907 ID=mRNA_2907|Name=jgi.p|Nanoce1779_2|583772|organism=Nannochloropsis oceanica|type=mRNA|length=389bp
TTTCGTTTTTCTCGACATTTTTCTTCTTTTCGTTTTTACTCAAAATCGGT
TGTTGTGTCCTTCTGTTCTGTGCTCGCTGTTTTCTCTTGCTCGCCCGCTT
AAAATGCGTGCTTCCTCTCACAGCTGCCGATGCTACGGCTGCTGCGCGTG
GATACATATATCTCTATCTGCTGGCCTCTTCTCCCTAACTCCCCTCTTTC
TCCTCGTCACGCGAGATTTCCTTCCATTAGATTATTATATTGCATTTCTC
CCTCGCTGCTTTTCATGTTCACACCACACTTTCCTCTCGCGCTCGCTCTT
CCTCTTGTTGTTGCTGCTCCTAGCGTTGCTGCTGTCGTCGATCAGTTGTG
CATTCAAACACCCTTAATCTCACACCTCTTCCGCCCGCC
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protein sequence of jgi.p|Nanoce1779_2|583772

>mRNA_2907-protein ID=mRNA_2907-protein|Name=jgi.p|Nanoce1779_2|583772|organism=Nannochloropsis oceanica|type=polypeptide|length=88bp
MRASSHSCRCYGCCAWIHISLSAGLFSLTPLFLLVTRDFLPLDYYIAFLP
RCFSCSHHTFLSRSLFLLLLLLLALLLSSISCAFKHP*
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mRNA from alignment at scaffold_7:218243..218631-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2907 ID=mRNA_2907|Name=jgi.p|Nanoce1779_2|583772|organism=Nannochloropsis oceanica|type=mRNA|length=389bp|location=Sequence derived from alignment at scaffold_7:218243..218631- (Nannochloropsis oceanica)
TTTCGTTTTTCTCGACATTTTTCTTCTTTTCGTTTTTACTCAAAATCGGT
TGTTGTGTCCTTCTGTTCTGTGCTCGCTGTTTTCTCTTGCTCGCCCGCTT
AAAATGCGTGCTTCCTCTCACAGCTGCCGATGCTACGGCTGCTGCGCGTG
GATACATATATCTCTATCTGCTGGCCTCTTCTCCCTAACTCCCCTCTTTC
TCCTCGTCACGCGAGATTTCCTTCCATTAGATTATTATATTGCATTTCTC
CCTCGCTGCTTTTCATGTTCACACCACACTTTCCTCTCGCGCTCGCTCTT
CCTCTTGTTGTTGCTGCTCCTAGCGTTGCTGCTGTCGTCGATCAGTTGTG
CATTCAAACACCCTTAATCTCACACCTCTTCCGCCCGCC
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Coding sequence (CDS) from alignment at scaffold_7:218243..218631-

>mRNA_2907 ID=mRNA_2907|Name=jgi.p|Nanoce1779_2|583772|organism=Nannochloropsis oceanica|type=CDS|length=264bp|location=Sequence derived from alignment at scaffold_7:218243..218631- (Nannochloropsis oceanica)
ATGCGTGCTTCCTCTCACAGCTGCCGATGCTACGGCTGCTGCGCGTGGAT
ACATATATCTCTATCTGCTGGCCTCTTCTCCCTAACTCCCCTCTTTCTCC
TCGTCACGCGAGATTTCCTTCCATTAGATTATTATATTGCATTTCTCCCT
CGCTGCTTTTCATGTTCACACCACACTTTCCTCTCGCGCTCGCTCTTCCT
CTTGTTGTTGCTGCTCCTAGCGTTGCTGCTGTCGTCGATCAGTTGTGCAT
TCAAACACCCTTAA
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Synonyms
Publications