Properties
| Property Name | Value |
|---|
| TranscriptId | 553419 |
| Track | FilteredModels2 |
| ProteinId | 553333 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_7 | supercontig | scaffold_7:215935..218168 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2906 ID=mRNA_2906|Name=jgi.p|Nanoce1779_2|553333|organism=Nannochloropsis oceanica|type=mRNA|length=2019bp
CCAACGACCAATTCTCCAACCCAACCAAACCCGCCTCCATCTCATCAGAC
TGCTTATGTGTGGTTGCTTAGAGGTATCGAGGGCATCTTGGCTGGAGCTT
TGGATGCGGATTACGACCTCCGGGATCAACTTCACGGCCGGGCCTCTATC
GGACGTACTCTCATGCTCTCTACGCTCGACCAACCCAACATATCAACACA
GGATCATCACGGGCAAGCATGCCTTCCGTCGTCGAGTCCTGTGATGCAAC
AGCCGGCGGCTTGAGTCAAGCCGCCAACGCCAACAACGACAACAACAGAA
TACAGGCAATGTGGTGCATCTTGCAAGCCAAGACTTTGGAAATGCTTGAT
AGCCCCTATATGCTCAAGCTCACGAAACGCTTGGCCGTGCTTCTAGAGTC
CTTGGGAGTTCCTCCTCCCTACCCAGAACCAGACCAAATCGCCTTGTGCG
TCACCGCTGTGCTCACCACCCTCCTCCTCTACTTCTTGCTTTTCGGTAAA
CGCCATCGGTTGAGAAGAAAGATGCTGGCGAAAGATCTGAGGGAGGCACG
GAAAAAGGTGCAAGAATTGGAAGAAAAATTACTGGAGATGGAAGTGAAGG
AGGAGGGGGCGAGCCCAAAGGGGAATCAACGCCCTGTCCGTATATGGATG
GATGGCTGCTTTGATATGATGCACTATGGACATATGAACGCGTTTCGACA
GGGTAAGGCTTTGGGGACTTTTTTGGTGGTTGGGGTTAACTCAGATGCGA
CCATTACAGCATGCAAGGGGCCGCCGGTCATGAATGACGAGGAAAGGCTG
GCGGCCGTGGAGGGATGTCGCTTTGTGGATGAGGTAGTCCCAGATGTACC
GTATGTGATGGACGAGGCGTATCTAAAGAGGGTGATGGAGAAGTATAGGA
TTGATTTCGTGGTGCATGGCGATGACCCTTGTATTGTGAATGGGAGAGAT
GTCTATGAGGTGCCTCAGAAGATGGGGAAATACCGCACAATTCCACGGAC
AGAGGGGGTGAGCACCACGGATATTGTGGGGAGAATGCTGTTGATGAGCC
GGAGGCATCACCAACGCACAGAGTCTACGGGCTCGCAGACGGGGCAATTG
GCGTCGGAGAAGAAGATGCCAAAAGGTGGGTCGCAGGGTAGAGTGGGAGG
AGCGGTGGGGGAGGCGGAAGCCCGAGAGCAGCAGTTGCAGCAGGCACAAG
AGGGGGCAGCGTTCTACAGACGGTCTCGATTCTTGACCACTTCGAGAATG
ATCCGTTTGTTCTCCGCCGGCATGCGGGCCGGGCCGCCGCATCGGGATAG
TAAAGTGGTGTACATCGATGGGAGTTGGGACATGTTCCACGCGGGGCACA
TCAAGACACTGAAGAAGATCAAGGAGGGTAATGGAAGTGGGGGCATCTTT
TTGATTGTGGGGGTGCACAATGATCAGGTGGTGAACGCACAACGAGGCTC
CAACTTTCCAATCATGAACCTCCACGAGCGTGTCTTGTCCGTGCTAGGCT
GCAAATACGTCGATGACGTCCTGATTGATGCTCCCTACAAGGTAACACGG
GAGATGATCGCCTCCTTGAATCTCTCCTTGGTCCTGCATGGCGCACACAG
GGACGAGAATGACGAGGAGGGTTCATGGAAGGGGGATGGTAGGGAGGGGG
GGGCGGGCTGCGGGGAGGAGGATCCGTTTGCAGTGCCGAAGGAGATGGGA
ATCTTTGGAGATGTGTCATCGGATTGCGCACTGTCCGTGCGGGAGATCAT
TTCAAGGATTCAAAAAAACCAGGAGCTGTTTGTGGCGAAGTACAGTAAGA
AGAAGGTGGCGGAGGATGAGTATTACAATGCACGGTATGCGATTGAGGGG
GAGAAGGAGGGAGGGAAGGAGAGGGAGGGAAGAAATGGGCATTGAGGAGG
AGGAGGAGGAAAAGGGAAGAGGACGAGGACGAGGACGAGGGAGGAGGAGG
AGAAAGGGGTGCGGTGTGATGCTGAGAATGGCGTAAGGATCGTCATGATG
CACTGCATCCGATGGGGAG back to topprotein sequence of jgi.p|Nanoce1779_2|553333 >mRNA_2906-protein ID=mRNA_2906-protein|Name=jgi.p|Nanoce1779_2|553333|organism=Nannochloropsis oceanica|type=polypeptide|length=559bp
MPSVVESCDATAGGLSQAANANNDNNRIQAMWCILQAKTLEMLDSPYMLK
LTKRLAVLLESLGVPPPYPEPDQIALCVTAVLTTLLLYFLLFGKRHRLRR
KMLAKDLREARKKVQELEEKLLEMEVKEEGASPKGNQRPVRIWMDGCFDM
MHYGHMNAFRQGKALGTFLVVGVNSDATITACKGPPVMNDEERLAAVEGC
RFVDEVVPDVPYVMDEAYLKRVMEKYRIDFVVHGDDPCIVNGRDVYEVPQ
KMGKYRTIPRTEGVSTTDIVGRMLLMSRRHHQRTESTGSQTGQLASEKKM
PKGGSQGRVGGAVGEAEAREQQLQQAQEGAAFYRRSRFLTTSRMIRLFSA
GMRAGPPHRDSKVVYIDGSWDMFHAGHIKTLKKIKEGNGSGGIFLIVGVH
NDQVVNAQRGSNFPIMNLHERVLSVLGCKYVDDVLIDAPYKVTREMIASL
NLSLVLHGAHRDENDEEGSWKGDGREGGAGCGEEDPFAVPKEMGIFGDVS
SDCALSVREIISRIQKNQELFVAKYSKKKVAEDEYYNARYAIEGEKEGGK
EREGRNGH* back to topmRNA from alignment at scaffold_7:215935..218168+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2906 ID=mRNA_2906|Name=jgi.p|Nanoce1779_2|553333|organism=Nannochloropsis oceanica|type=mRNA|length=2234bp|location=Sequence derived from alignment at scaffold_7:215935..218168+ (Nannochloropsis oceanica)
CCAACGACCAATTCTCCAACCCAACCAAACCCGCCTCCATCTCATCAGAC
TGCTTATGTGTGGTTGCTTAGAGGTATCGAGGGCATCTTGGCTGGAGCTT
TGGATGCGGATTACGACCTCCGGGATCAACTTCACGGCCGGGCCTCTATC
GGACGTACTCTCATGCTCTCTACGCTCGACCAACCCAACATATCAACACA
GGATCATCACGGGCAAGCATGCCTTCCGTCGTCGAGTCCTGTGATGCAAC
AGCCGGCGGCTTGAGTCAAGGTAAGCAGCGAGCAGGTCACCCCGCGTTCC
TCCCTCCGTCAGACACTCACTCGCATCATCCTCATCCCCTTTCCAACACC
AAACCCACCACCACCCCACAGCCGCCAACGCCAACAACGACAACAACAGA
ATACAGGCAATGTGGTGCATCTTGCAAGCCAAGACTTTGGAAATGCTTGA
TAGCCCCTATATGCTCAAGCTCACGAAACGCTTGGCCGTGCTTCTAGAGT
CCTTGGGAGTTCCTCCTCCCTACCCAGAACCAGACCAAATCGCCTTGTGC
GTCACCGCTGTGCTCACCACCCTCCTCCTCTACTTCTTGCTTTTCGGTAA
ACGCCATCGGTTGAGAAGAAAGATGCTGGCGAAAGATCTGAGGGAGGCAC
GGAAAAAGGTGCAAGAATTGGAAGAAAAATTACTGGAGATGGAAGTGAAG
GAGGAGGGGGCGAGCCCAAAGGGGAATCAACGCCCTGTCCGTATATGGAT
GGATGGCTGCTTTGATATGATGCACTATGGACATATGAACGCGTTTCGAC
AGGGTAAGGCTTTGGGGACTTTTTTGGTGGTTGGGGTTAACTCAGATGCG
ACCATTACAGCATGCAAGGGGCCGCCGGTCATGAATGACGAGGAAAGGCT
GGCGGCCGTGGAGGGATGTCGCTTTGTGGATGAGGTAGTCCCAGATGTAC
CGTATGTGATGGACGAGGCGTATCTAAAGAGGGTGATGGAGAAGTATAGG
ATTGATTTCGTGGTGCATGGCGATGACCCTTGTATTGTGAATGGGAGAGA
TGTCTATGAGGTGCCTCAGAAGATGGGGAAATACCGCACAATTCCACGGA
CAGAGGGGGTGAGCACCACGGATATTGTGGGGAGAATGCTGTTGATGAGC
CGGAGGCATCACCAACGCACAGAGTCTACGGGCTCGCAGACGGGGCAATT
GGCGTCGGAGAAGAAGATGCCAAAAGGTGGGTCGCAGGGTAGAGTGGGAG
GAGCGGTGGGGGAGGCGGAAGCCCGAGAGCAGCAGTTGCAGCAGGCACAA
GAGGGGGCAGCGTTCTACAGACGGTCTCGATTCTTGACCACTTCGAGAAT
GATCCGTTTGTTCTCCGCCGGCATGCGGGCCGGGCCGCCGCATCGGGATA
GTAAAGTGGTGTACATCGATGGGAGTTGGGACATGTTCCACGCGGGGCAC
ATCAAGACACTGAAGAAGATCAAGGAGGGTAATGGAAGTGGGGGCATCTT
TTTGATTGTGGGGGTGCACAATGATCAGGTAAGGAAAGGAGGAAGGGAGG
GAGGGAGGGAGGGGGAGGAGTGTTTATTTTCCTCCTTTTCTCCGAATTCT
GACCTAATTTTTCTCCCTTCCACCCCTCCTCCCTTCCCACAGGTGGTGAA
CGCACAACGAGGCTCCAACTTTCCAATCATGAACCTCCACGAGCGTGTCT
TGTCCGTGCTAGGCTGCAAATACGTCGATGACGTCCTGATTGATGCTCCC
TACAAGGTAACACGGGAGATGATCGCCTCCTTGAATCTCTCCTTGGTCCT
GCATGGCGCACACAGGGACGAGAATGACGAGGAGGGTTCATGGAAGGGGG
ATGGTAGGGAGGGGGGGGCGGGCTGCGGGGAGGAGGATCCGTTTGCAGTG
CCGAAGGAGATGGGAATCTTTGGAGATGTGTCATCGGATTGCGCACTGTC
CGTGCGGGAGATCATTTCAAGGATTCAAAAAAACCAGGAGCTGTTTGTGG
CGAAGTACAGTAAGAAGAAGGTGGCGGAGGATGAGTATTACAATGCACGG
TATGCGATTGAGGGGGAGAAGGAGGGAGGGAAGGAGAGGGAGGGAAGAAA
TGGGCATTGAGGAGGAGGAGGAGGAAAAGGGAAGAGGACGAGGACGAGGA
CGAGGGAGGAGGAGGAGAAAGGGGTGCGGTGTGATGCTGAGAATGGCGTA
AGGATCGTCATGATGCACTGCATCCGATGGGGAG back to topCoding sequence (CDS) from alignment at scaffold_7:215935..218168+ >mRNA_2906 ID=mRNA_2906|Name=jgi.p|Nanoce1779_2|553333|organism=Nannochloropsis oceanica|type=CDS|length=5031bp|location=Sequence derived from alignment at scaffold_7:215935..218168+ (Nannochloropsis oceanica)
ATGCCTTCCGTCGTCGAGTCCTGTGATGCAACAGCCGGCGGCTTGAGTCA
AGCCGCCAACGCCAACAACGACAACAACAGAATACAGGCAATGTGGTGCA
TCTTGCAAGCCAAGACTTTGGAAATGCTTGATAGCCCCTATATGCTCAAG
CTCACGAAACGCTTGGCCGTGCTTCTAGAGTCCTTGGGAGTTCCTCCTCC
CTACCCAGAACCAGACCAAATCGCCTTGTGCGTCACCGCTGTGCTCACCA
CCCTCCTCCTCTACTTCTTGCTTTTCGGTAAACGCCATCGGTTGAGAAGA
AAGATGCTGGCGAAAGATCTGAGGGAGGCACGGAAAAAGGTGCAAGAATT
GGAAGAAAAATTACTGGAGATGGAAGTGAAGGAGGAGGGGGCGAGCCCAA
AGGGGAATCAACGCCCTGTCCGTATATGGATGGATGGCTGCTTTGATATG
ATGCACTATGGACATATGAACGCGTTTCGACAGGGTAAGGCTTTGGGGAC
TTTTTTGGTGGTTGGGGTTAACTCAGATGCGACCATTACAGCATGCAAGG
GGCCGCCGGTCATGAATGACGAGGAAAGGCTGGCGGCCGTGGAGGGATGT
CGCTTTGTGGATGAGGTAGTCCCAGATGTACCGTATGTGATGGACGAGGC
GTATCTAAAGAGGGTGATGGAGAAGTATAGGATTGATTTCGTGGTGCATG
GCGATGACCCTTGTATTGTGAATGGGAGAGATGTCTATGAGGTGCCTCAG
AAGATGGGGAAATACCGCACAATTCCACGGACAGAGGGGGTGAGCACCAC
GGATATTGTGGGGAGAATGCTGTTGATGAGCCGGAGGCATCACCAACGCA
CAGAGTCTACGGGCTCGCAGACGGGGCAATTGGCGTCGGAGAAGAAGATG
CCAAAAGGTGGGTCGCAGGGTAGAGTGGGAGGAGCGGTGGGGGAGGCGGA
AGCCCGAGAGCAGCAGTTGCAGCAGGCACAAGAGGGGGCAGCGTTCTACA
GACGGTCTCGATTCTTGACCACTTCGAGAATGATCCGTTTGTTCTCCGCC
GGCATGCGGGCCGGGCCGCCGCATCGGGATAGTAAAGTGGTGTACATCGA
TGGGAGTTGGGACATGTTCCACGCGGGGCACATCAAGACACTGAAGAAGA
TCAAGGAGGGTAATGGAAGTGGGGGCATCTTTTTGATTGTGGGGGTGCAC
AATGATCAGGTGGTGAACGCACAACGAGGCTCCAACTTTCCAATCATGAA
CCTCCACGAGCGTGTCTTGTCCGTGCTAGGCTGCAAATACGTCGATGACG
TCCTGATTGATGCTCCCTACAAGGTAACACGGGAGATGATCGCCTCCTTG
AATCTCTCCTTGGTCCTGCATGGCGCACACAGGGACGAGAATGACGAGGA
GGGTTCATGGAAGGGGGATGGTAGGGAGGGGGGGGCGGGCTGCGGGGAGG
AGGATCCGTTTGCAGTGCCGAAGGAGATGGGAATCTTTGGAGATGTGTCA
TCGGATTGCGCACTGTCCGTGCGGGAGATCATTTCAAGGATTCAAAAAAA
CCAGGAGCTGTTTGTGGCGAAGTACAGTAAGAAGAAGGTGGCGGAGGATG
AGTATTACAATGCACGGTATGCGATTGAGGGGGAGAAGGAGGGAGGGAAG
GAGAGGGAGGGAAGAAATGGGCATTGAATGCCTTCCGTCGTCGAGTCCTG
TGATGCAACAGCCGGCGGCTTGAGTCAAGCCGCCAACGCCAACAACGACA
ACAACAGAATACAGGCAATGTGGTGCATCTTGCAAGCCAAGACTTTGGAA
ATGCTTGATAGCCCCTATATGCTCAAGCTCACGAAACGCTTGGCCGTGCT
TCTAGAGTCCTTGGGAGTTCCTCCTCCCTACCCAGAACCAGACCAAATCG
CCTTGTGCGTCACCGCTGTGCTCACCACCCTCCTCCTCTACTTCTTGCTT
TTCGGTAAACGCCATCGGTTGAGAAGAAAGATGCTGGCGAAAGATCTGAG
GGAGGCACGGAAAAAGGTGCAAGAATTGGAAGAAAAATTACTGGAGATGG
AAGTGAAGGAGGAGGGGGCGAGCCCAAAGGGGAATCAACGCCCTGTCCGT
ATATGGATGGATGGCTGCTTTGATATGATGCACTATGGACATATGAACGC
GTTTCGACAGGGTAAGGCTTTGGGGACTTTTTTGGTGGTTGGGGTTAACT
CAGATGCGACCATTACAGCATGCAAGGGGCCGCCGGTCATGAATGACGAG
GAAAGGCTGGCGGCCGTGGAGGGATGTCGCTTTGTGGATGAGGTAGTCCC
AGATGTACCGTATGTGATGGACGAGGCGTATCTAAAGAGGGTGATGGAGA
AGTATAGGATTGATTTCGTGGTGCATGGCGATGACCCTTGTATTGTGAAT
GGGAGAGATGTCTATGAGGTGCCTCAGAAGATGGGGAAATACCGCACAAT
TCCACGGACAGAGGGGGTGAGCACCACGGATATTGTGGGGAGAATGCTGT
TGATGAGCCGGAGGCATCACCAACGCACAGAGTCTACGGGCTCGCAGACG
GGGCAATTGGCGTCGGAGAAGAAGATGCCAAAAGGTGGGTCGCAGGGTAG
AGTGGGAGGAGCGGTGGGGGAGGCGGAAGCCCGAGAGCAGCAGTTGCAGC
AGGCACAAGAGGGGGCAGCGTTCTACAGACGGTCTCGATTCTTGACCACT
TCGAGAATGATCCGTTTGTTCTCCGCCGGCATGCGGGCCGGGCCGCCGCA
TCGGGATAGTAAAGTGGTGTACATCGATGGGAGTTGGGACATGTTCCACG
CGGGGCACATCAAGACACTGAAGAAGATCAAGGAGGGTAATGGAAGTGGG
GGCATCTTTTTGATTGTGGGGGTGCACAATGATCAGGTGGTGAACGCACA
ACGAGGCTCCAACTTTCCAATCATGAACCTCCACGAGCGTGTCTTGTCCG
TGCTAGGCTGCAAATACGTCGATGACGTCCTGATTGATGCTCCCTACAAG
GTAACACGGGAGATGATCGCCTCCTTGAATCTCTCCTTGGTCCTGCATGG
CGCACACAGGGACGAGAATGACGAGGAGGGTTCATGGAAGGGGGATGGTA
GGGAGGGGGGGGCGGGCTGCGGGGAGGAGGATCCGTTTGCAGTGCCGAAG
GAGATGGGAATCTTTGGAGATGTGTCATCGGATTGCGCACTGTCCGTGCG
GGAGATCATTTCAAGGATTCAAAAAAACCAGGAGCTGTTTGTGGCGAAGT
ACAGTAAGAAGAAGGTGGCGGAGGATGAGTATTACAATGCACGGTATGCG
ATTGAGGGGGAGAAGGAGGGAGGGAAGGAGAGGGAGGGAAGAAATGGGCA
TTGAATGCCTTCCGTCGTCGAGTCCTGTGATGCAACAGCCGGCGGCTTGA
GTCAAGCCGCCAACGCCAACAACGACAACAACAGAATACAGGCAATGTGG
TGCATCTTGCAAGCCAAGACTTTGGAAATGCTTGATAGCCCCTATATGCT
CAAGCTCACGAAACGCTTGGCCGTGCTTCTAGAGTCCTTGGGAGTTCCTC
CTCCCTACCCAGAACCAGACCAAATCGCCTTGTGCGTCACCGCTGTGCTC
ACCACCCTCCTCCTCTACTTCTTGCTTTTCGGTAAACGCCATCGGTTGAG
AAGAAAGATGCTGGCGAAAGATCTGAGGGAGGCACGGAAAAAGGTGCAAG
AATTGGAAGAAAAATTACTGGAGATGGAAGTGAAGGAGGAGGGGGCGAGC
CCAAAGGGGAATCAACGCCCTGTCCGTATATGGATGGATGGCTGCTTTGA
TATGATGCACTATGGACATATGAACGCGTTTCGACAGGGTAAGGCTTTGG
GGACTTTTTTGGTGGTTGGGGTTAACTCAGATGCGACCATTACAGCATGC
AAGGGGCCGCCGGTCATGAATGACGAGGAAAGGCTGGCGGCCGTGGAGGG
ATGTCGCTTTGTGGATGAGGTAGTCCCAGATGTACCGTATGTGATGGACG
AGGCGTATCTAAAGAGGGTGATGGAGAAGTATAGGATTGATTTCGTGGTG
CATGGCGATGACCCTTGTATTGTGAATGGGAGAGATGTCTATGAGGTGCC
TCAGAAGATGGGGAAATACCGCACAATTCCACGGACAGAGGGGGTGAGCA
CCACGGATATTGTGGGGAGAATGCTGTTGATGAGCCGGAGGCATCACCAA
CGCACAGAGTCTACGGGCTCGCAGACGGGGCAATTGGCGTCGGAGAAGAA
GATGCCAAAAGGTGGGTCGCAGGGTAGAGTGGGAGGAGCGGTGGGGGAGG
CGGAAGCCCGAGAGCAGCAGTTGCAGCAGGCACAAGAGGGGGCAGCGTTC
TACAGACGGTCTCGATTCTTGACCACTTCGAGAATGATCCGTTTGTTCTC
CGCCGGCATGCGGGCCGGGCCGCCGCATCGGGATAGTAAAGTGGTGTACA
TCGATGGGAGTTGGGACATGTTCCACGCGGGGCACATCAAGACACTGAAG
AAGATCAAGGAGGGTAATGGAAGTGGGGGCATCTTTTTGATTGTGGGGGT
GCACAATGATCAGGTGGTGAACGCACAACGAGGCTCCAACTTTCCAATCA
TGAACCTCCACGAGCGTGTCTTGTCCGTGCTAGGCTGCAAATACGTCGAT
GACGTCCTGATTGATGCTCCCTACAAGGTAACACGGGAGATGATCGCCTC
CTTGAATCTCTCCTTGGTCCTGCATGGCGCACACAGGGACGAGAATGACG
AGGAGGGTTCATGGAAGGGGGATGGTAGGGAGGGGGGGGCGGGCTGCGGG
GAGGAGGATCCGTTTGCAGTGCCGAAGGAGATGGGAATCTTTGGAGATGT
GTCATCGGATTGCGCACTGTCCGTGCGGGAGATCATTTCAAGGATTCAAA
AAAACCAGGAGCTGTTTGTGGCGAAGTACAGTAAGAAGAAGGTGGCGGAG
GATGAGTATTACAATGCACGGTATGCGATTGAGGGGGAGAAGGAGGGAGG
GAAGGAGAGGGAGGGAAGAAATGGGCATTGA back to top
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