jgi.p|Nanoce1779_2|583752, mRNA_2903 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|583752
Unique Name	mRNA_2903
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2302
Alignment location	scaffold_7:206220..208521 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	583838
Track	FilteredModels2
ProteinId	583752

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:206220..208521 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583752	gene_2903	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583752	mRNA_2903-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2903	CDS_2903	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:206220..208521-
coding sequence from alignment at scaffold_7:206220..208521-

mRNA sequence

>mRNA_2903 ID=mRNA_2903|Name=jgi.p|Nanoce1779_2|583752|organism=Nannochloropsis oceanica|type=mRNA|length=2302bp
ACAGTCGACAGGAGGCGAAGTGGAAGTGGCGTCCAACCATCAACCAGCCA
AGCTCCTATCTCCCTTCGCCTCTCCAGCAACAGCAACTTGATCGAACCCC
ACCCCTCTCCTCCTGCACCCTATTTAACACTGTCATGGAGCGGTGGCAAA
GAAGACGGCAGGGCCTGTGCGGGGTGGCCGTGCTGCTGAGCCTTTTCCTG
ACCACAACTACGAACGCAGCCATCACAAGCCCAACATCACCACCAGTAGC
AGCCGCCATCTGCTCCGGCCTCTTCTCCTCCTCGTCCTCCTTTTCCTCTT
CCTTTTCCTCTTCCTCCTCGTCCTCGTCCTCCTCGTCCTCCTCCTCCTTT
TCCTCTTCGTCCTCCTCGTTTTCCTCCCCTTTCAGTGGAGCTAGCGCTTC
CTATTTCTTATCTAAAGCCCGCGGCGGTTCCTCCTCATCCCAACGCGTGG
GCGAAATTCTGCATGGCAAAGGCCTTTCCTCGACTGTCTCCAAAGCCATT
AAACGTGAAGGCCCCACCCTCTCCCTCGCACCTGTCCTCTTCCTCGGCGC
CTGCGAAGATGCCTCCCGCACCCTCCTCTCTGAGCTTTTTGAATTCGCCC
GACCCCCAACCACGAGCGGTGCACATGTGACGATTGCTCGTTTTGGGGAC
TCGGCAGATGACGAGGACGAGGAAGTGGGGGAGCGACAGGCCATAGCGCT
CATTACCACCTTGGTTTCGGAAGAAGAAGACTTGTCCTCAGGTGCTTTCA
CCGCGATGTCCCACACTGTGGCGGCCGGATTTGCGCTGGGAAACGACGTT
GTTTGGACGGTGTCGTTCTCGGATGTGCTGAGGGGAGAGTTGAGGGGAGG
GATGGCGGTGCTCCAGGCAGCGCTGGAGCAGTACATAGGATTTGAAGGAA
AGGGTTTAATCGACTTGGAAGCACCTGTGAAGACATTGCATTTGGTTGTG
ACGGATGTTGGGAAAGAGGAGGGCGAGGAGTTGGGGTTAGGCAAGGCGTT
GGAGAAGCACGTGAGTGCGATGTGGCGGAAGTTGATCAAACCGGCGGGGA
GCATCAGTGAGGACGAAGAAGAAGGAGACGAGGACGGATTGTTGACGCCG
CCGGGGTGGACGCGGATTATGAATGTGAATGTGATTTACTTGCCCAGCAA
GGCCTATGCATCTTCTGAGCACACCGCTGTCGTCTCCTCCCTCAAGGCCA
GCCTCGACAAAAAGCTGGAGAAAACCAACCCCTTCATCCTGGCCTCTGCC
CTGCAATCCTCCATTTCTACCCTCACCTCCTCCTCCTCCCCCCCTTCCCT
CCGTTTTTCGTCCTTGCCCAAGGCCGACACTGTCGTCTCGTCCTTCTATC
TGGACAAGCTTGTGGCCCGCTACGCGTCGCAGTTCCAACAAGATTCCCGC
CAACTACTTGAGGAATTGAACACCGGCTACGACGAAGATTTCGGCCGTAC
CTTCACCGAGCTCATCGAGAAATACCTCTCCGATTTCCACCAAGAGGTCT
ATGGACACGACGCTGGCCCCATCCATACCTCTCTCCAGGGACTGGACGCC
GGGCAGGTTTCGGCGGTCGTCAAGGTGAAAAAGGAGCAGTTGCGGAAGGC
CTTGCTGGGGTTGGCGGAGGCAGGGTACGCGCGGCAACTGCTGTTTCTGA
AACAAATGGCACAGGAAGAGTTCAGGAAAGGCATCAGTAGCTTGAAATAC
CAGTGGGAATTAATCCCGGGTTTCGCCAAAGCGATCAAGGCGGCGAAGGC
CTTATTTGTGGACCGAGCGGGGAAGCTTGCGTGTGCCAGGAGTGGTGGCA
AGTGGAAGGCGGCCGCCGAGAAGGAGCTGCGGAGTTTGTCCAAGATCCTC
GAGACGCAGGCGGATGATGTGATTGAGCGCACGCGGGCATCGGGGGGTTT
CGTGCCCTCCAAACTCCGGCGGCCGATTGGGATCCAGGTCAATTGGCTGG
GTGCGAATTTCTTCCATTTCTTGAGGGATAGCTCGGTGGACCCGCTGAGT
GTGAGAACGGACAGCGGGGTGGCGTTATGGCAAAATCTGGGGGAGACGTG
GGCAAGTCGGGATGGGAAGGACCAGAGGGTCAGTGCGCGGTACAGGCAGA
TGTATGGGGAGGAGGTTGATCCGATGGTGATGGACTACTTGTCGGTGTCG
CCGAAAGGGGTGGGATTGAATGACAAGGATCCGCGGGTGAAGTTTGGGTG
GAACAGGCGGGTGGCATATGAGTTGGTGAGGAACCATGACGACATGACGT
TTCAGATTCCGCATGCTAAGGCAATCAAGGATTATTAAAGAGGGGGTTAA
AG

protein sequence of jgi.p|Nanoce1779_2|583752

>mRNA_2903-protein ID=mRNA_2903-protein|Name=jgi.p|Nanoce1779_2|583752|organism=Nannochloropsis oceanica|type=polypeptide|length=718bp
MERWQRRRQGLCGVAVLLSLFLTTTTNAAITSPTSPPVAAAICSGLFSSS
SSFSSSFSSSSSSSSSSSSSSFSSSSSSFSSPFSGASASYFLSKARGGSS
SSQRVGEILHGKGLSSTVSKAIKREGPTLSLAPVLFLGACEDASRTLLSE
LFEFARPPTTSGAHVTIARFGDSADDEDEEVGERQAIALITTLVSEEEDL
SSGAFTAMSHTVAAGFALGNDVVWTVSFSDVLRGELRGGMAVLQAALEQY
IGFEGKGLIDLEAPVKTLHLVVTDVGKEEGEELGLGKALEKHVSAMWRKL
IKPAGSISEDEEEGDEDGLLTPPGWTRIMNVNVIYLPSKAYASSEHTAVV
SSLKASLDKKLEKTNPFILASALQSSISTLTSSSSPPSLRFSSLPKADTV
VSSFYLDKLVARYASQFQQDSRQLLEELNTGYDEDFGRTFTELIEKYLSD
FHQEVYGHDAGPIHTSLQGLDAGQVSAVVKVKKEQLRKALLGLAEAGYAR
QLLFLKQMAQEEFRKGISSLKYQWELIPGFAKAIKAAKALFVDRAGKLAC
ARSGGKWKAAAEKELRSLSKILETQADDVIERTRASGGFVPSKLRRPIGI
QVNWLGANFFHFLRDSSVDPLSVRTDSGVALWQNLGETWASRDGKDQRVS
ARYRQMYGEEVDPMVMDYLSVSPKGVGLNDKDPRVKFGWNRRVAYELVRN
HDDMTFQIPHAKAIKDY*

mRNA from alignment at scaffold_7:206220..208521-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2903 ID=mRNA_2903|Name=jgi.p|Nanoce1779_2|583752|organism=Nannochloropsis oceanica|type=mRNA|length=2302bp|location=Sequence derived from alignment at scaffold_7:206220..208521- (Nannochloropsis oceanica)
ACAGTCGACAGGAGGCGAAGTGGAAGTGGCGTCCAACCATCAACCAGCCA
AGCTCCTATCTCCCTTCGCCTCTCCAGCAACAGCAACTTGATCGAACCCC
ACCCCTCTCCTCCTGCACCCTATTTAACACTGTCATGGAGCGGTGGCAAA
GAAGACGGCAGGGCCTGTGCGGGGTGGCCGTGCTGCTGAGCCTTTTCCTG
ACCACAACTACGAACGCAGCCATCACAAGCCCAACATCACCACCAGTAGC
AGCCGCCATCTGCTCCGGCCTCTTCTCCTCCTCGTCCTCCTTTTCCTCTT
CCTTTTCCTCTTCCTCCTCGTCCTCGTCCTCCTCGTCCTCCTCCTCCTTT
TCCTCTTCGTCCTCCTCGTTTTCCTCCCCTTTCAGTGGAGCTAGCGCTTC
CTATTTCTTATCTAAAGCCCGCGGCGGTTCCTCCTCATCCCAACGCGTGG
GCGAAATTCTGCATGGCAAAGGCCTTTCCTCGACTGTCTCCAAAGCCATT
AAACGTGAAGGCCCCACCCTCTCCCTCGCACCTGTCCTCTTCCTCGGCGC
CTGCGAAGATGCCTCCCGCACCCTCCTCTCTGAGCTTTTTGAATTCGCCC
GACCCCCAACCACGAGCGGTGCACATGTGACGATTGCTCGTTTTGGGGAC
TCGGCAGATGACGAGGACGAGGAAGTGGGGGAGCGACAGGCCATAGCGCT
CATTACCACCTTGGTTTCGGAAGAAGAAGACTTGTCCTCAGGTGCTTTCA
CCGCGATGTCCCACACTGTGGCGGCCGGATTTGCGCTGGGAAACGACGTT
GTTTGGACGGTGTCGTTCTCGGATGTGCTGAGGGGAGAGTTGAGGGGAGG
GATGGCGGTGCTCCAGGCAGCGCTGGAGCAGTACATAGGATTTGAAGGAA
AGGGTTTAATCGACTTGGAAGCACCTGTGAAGACATTGCATTTGGTTGTG
ACGGATGTTGGGAAAGAGGAGGGCGAGGAGTTGGGGTTAGGCAAGGCGTT
GGAGAAGCACGTGAGTGCGATGTGGCGGAAGTTGATCAAACCGGCGGGGA
GCATCAGTGAGGACGAAGAAGAAGGAGACGAGGACGGATTGTTGACGCCG
CCGGGGTGGACGCGGATTATGAATGTGAATGTGATTTACTTGCCCAGCAA
GGCCTATGCATCTTCTGAGCACACCGCTGTCGTCTCCTCCCTCAAGGCCA
GCCTCGACAAAAAGCTGGAGAAAACCAACCCCTTCATCCTGGCCTCTGCC
CTGCAATCCTCCATTTCTACCCTCACCTCCTCCTCCTCCCCCCCTTCCCT
CCGTTTTTCGTCCTTGCCCAAGGCCGACACTGTCGTCTCGTCCTTCTATC
TGGACAAGCTTGTGGCCCGCTACGCGTCGCAGTTCCAACAAGATTCCCGC
CAACTACTTGAGGAATTGAACACCGGCTACGACGAAGATTTCGGCCGTAC
CTTCACCGAGCTCATCGAGAAATACCTCTCCGATTTCCACCAAGAGGTCT
ATGGACACGACGCTGGCCCCATCCATACCTCTCTCCAGGGACTGGACGCC
GGGCAGGTTTCGGCGGTCGTCAAGGTGAAAAAGGAGCAGTTGCGGAAGGC
CTTGCTGGGGTTGGCGGAGGCAGGGTACGCGCGGCAACTGCTGTTTCTGA
AACAAATGGCACAGGAAGAGTTCAGGAAAGGCATCAGTAGCTTGAAATAC
CAGTGGGAATTAATCCCGGGTTTCGCCAAAGCGATCAAGGCGGCGAAGGC
CTTATTTGTGGACCGAGCGGGGAAGCTTGCGTGTGCCAGGAGTGGTGGCA
AGTGGAAGGCGGCCGCCGAGAAGGAGCTGCGGAGTTTGTCCAAGATCCTC
GAGACGCAGGCGGATGATGTGATTGAGCGCACGCGGGCATCGGGGGGTTT
CGTGCCCTCCAAACTCCGGCGGCCGATTGGGATCCAGGTCAATTGGCTGG
GTGCGAATTTCTTCCATTTCTTGAGGGATAGCTCGGTGGACCCGCTGAGT
GTGAGAACGGACAGCGGGGTGGCGTTATGGCAAAATCTGGGGGAGACGTG
GGCAAGTCGGGATGGGAAGGACCAGAGGGTCAGTGCGCGGTACAGGCAGA
TGTATGGGGAGGAGGTTGATCCGATGGTGATGGACTACTTGTCGGTGTCG
CCGAAAGGGGTGGGATTGAATGACAAGGATCCGCGGGTGAAGTTTGGGTG
GAACAGGCGGGTGGCATATGAGTTGGTGAGGAACCATGACGACATGACGT
TTCAGATTCCGCATGCTAAGGCAATCAAGGATTATTAAAGAGGGGGTTAA
AG

Coding sequence (CDS) from alignment at scaffold_7:206220..208521-

>mRNA_2903 ID=mRNA_2903|Name=jgi.p|Nanoce1779_2|583752|organism=Nannochloropsis oceanica|type=CDS|length=2154bp|location=Sequence derived from alignment at scaffold_7:206220..208521- (Nannochloropsis oceanica)
ATGGAGCGGTGGCAAAGAAGACGGCAGGGCCTGTGCGGGGTGGCCGTGCT
GCTGAGCCTTTTCCTGACCACAACTACGAACGCAGCCATCACAAGCCCAA
CATCACCACCAGTAGCAGCCGCCATCTGCTCCGGCCTCTTCTCCTCCTCG
TCCTCCTTTTCCTCTTCCTTTTCCTCTTCCTCCTCGTCCTCGTCCTCCTC
GTCCTCCTCCTCCTTTTCCTCTTCGTCCTCCTCGTTTTCCTCCCCTTTCA
GTGGAGCTAGCGCTTCCTATTTCTTATCTAAAGCCCGCGGCGGTTCCTCC
TCATCCCAACGCGTGGGCGAAATTCTGCATGGCAAAGGCCTTTCCTCGAC
TGTCTCCAAAGCCATTAAACGTGAAGGCCCCACCCTCTCCCTCGCACCTG
TCCTCTTCCTCGGCGCCTGCGAAGATGCCTCCCGCACCCTCCTCTCTGAG
CTTTTTGAATTCGCCCGACCCCCAACCACGAGCGGTGCACATGTGACGAT
TGCTCGTTTTGGGGACTCGGCAGATGACGAGGACGAGGAAGTGGGGGAGC
GACAGGCCATAGCGCTCATTACCACCTTGGTTTCGGAAGAAGAAGACTTG
TCCTCAGGTGCTTTCACCGCGATGTCCCACACTGTGGCGGCCGGATTTGC
GCTGGGAAACGACGTTGTTTGGACGGTGTCGTTCTCGGATGTGCTGAGGG
GAGAGTTGAGGGGAGGGATGGCGGTGCTCCAGGCAGCGCTGGAGCAGTAC
ATAGGATTTGAAGGAAAGGGTTTAATCGACTTGGAAGCACCTGTGAAGAC
ATTGCATTTGGTTGTGACGGATGTTGGGAAAGAGGAGGGCGAGGAGTTGG
GGTTAGGCAAGGCGTTGGAGAAGCACGTGAGTGCGATGTGGCGGAAGTTG
ATCAAACCGGCGGGGAGCATCAGTGAGGACGAAGAAGAAGGAGACGAGGA
CGGATTGTTGACGCCGCCGGGGTGGACGCGGATTATGAATGTGAATGTGA
TTTACTTGCCCAGCAAGGCCTATGCATCTTCTGAGCACACCGCTGTCGTC
TCCTCCCTCAAGGCCAGCCTCGACAAAAAGCTGGAGAAAACCAACCCCTT
CATCCTGGCCTCTGCCCTGCAATCCTCCATTTCTACCCTCACCTCCTCCT
CCTCCCCCCCTTCCCTCCGTTTTTCGTCCTTGCCCAAGGCCGACACTGTC
GTCTCGTCCTTCTATCTGGACAAGCTTGTGGCCCGCTACGCGTCGCAGTT
CCAACAAGATTCCCGCCAACTACTTGAGGAATTGAACACCGGCTACGACG
AAGATTTCGGCCGTACCTTCACCGAGCTCATCGAGAAATACCTCTCCGAT
TTCCACCAAGAGGTCTATGGACACGACGCTGGCCCCATCCATACCTCTCT
CCAGGGACTGGACGCCGGGCAGGTTTCGGCGGTCGTCAAGGTGAAAAAGG
AGCAGTTGCGGAAGGCCTTGCTGGGGTTGGCGGAGGCAGGGTACGCGCGG
CAACTGCTGTTTCTGAAACAAATGGCACAGGAAGAGTTCAGGAAAGGCAT
CAGTAGCTTGAAATACCAGTGGGAATTAATCCCGGGTTTCGCCAAAGCGA
TCAAGGCGGCGAAGGCCTTATTTGTGGACCGAGCGGGGAAGCTTGCGTGT
GCCAGGAGTGGTGGCAAGTGGAAGGCGGCCGCCGAGAAGGAGCTGCGGAG
TTTGTCCAAGATCCTCGAGACGCAGGCGGATGATGTGATTGAGCGCACGC
GGGCATCGGGGGGTTTCGTGCCCTCCAAACTCCGGCGGCCGATTGGGATC
CAGGTCAATTGGCTGGGTGCGAATTTCTTCCATTTCTTGAGGGATAGCTC
GGTGGACCCGCTGAGTGTGAGAACGGACAGCGGGGTGGCGTTATGGCAAA
ATCTGGGGGAGACGTGGGCAAGTCGGGATGGGAAGGACCAGAGGGTCAGT
GCGCGGTACAGGCAGATGTATGGGGAGGAGGTTGATCCGATGGTGATGGA
CTACTTGTCGGTGTCGCCGAAAGGGGTGGGATTGAATGACAAGGATCCGC
GGGTGAAGTTTGGGTGGAACAGGCGGGTGGCATATGAGTTGGTGAGGAAC
CATGACGACATGACGTTTCAGATTCCGCATGCTAAGGCAATCAAGGATTA
TTAA

Synonyms

Publications