jgi.p|Nanoce1779_2|583749, mRNA_2902 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|583749
Unique Name	mRNA_2902
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	877
Alignment location	scaffold_7:205143..206019 +

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Properties


Property Name	Value
TranscriptId	583835
Track	FilteredModels2
ProteinId	583749

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:205143..206019 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583749	gene_2902	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583749	mRNA_2902-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2902	CDS_2902	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:205143..206019+
coding sequence from alignment at scaffold_7:205143..206019+

mRNA sequence

>mRNA_2902 ID=mRNA_2902|Name=jgi.p|Nanoce1779_2|583749|organism=Nannochloropsis oceanica|type=mRNA|length=877bp
ATTTCAAGAAGGGATAGAGAAAAATGAGAGAAAGGCTACCTTGTTCCAAA
GAAAGTATCTGTGTCTAAATGTTCACGTACTATTCCCTTTTGTCTTGGAC
TTATTCAAAAACTTTTGGATTTCGCAACCGGCCGACGCAGGAGGTTCACC
GTCGCCATCGCCCACCAGCTCAAGCGGATGAGCGATAGCGAGTGGCCTTC
ATATCCTGCCCTTATGACTATACTCACGCCACACCACAGCAATAGTTCCA
TGGCTACCTCTTGTTCTTGGCTTTAACATATTATCGCACGCTCTCTCCGT
TCGCTAACCACCATCCTCCCCTTTTCCCCGAGAAGACGCATCATCACCAT
GGCCCCGTCTTGGCTGGGCATCCTCTCCTTGCGACGCGCCACCGCGGCCC
TCTCTGTCCATGCACAGATCCTCCCCAGCATCACTATCAACACAAGCACC
CTTTCCTTGCTGTCTCCGCTGTCCGCCCCATTCATGCAGCAGTCCCGTGG
GCTTGCCAATCACCGGCACAAGAAAATCATCAAAATGGCGAAGGGCTACC
GTGGCCGTACCAACTGCTTCCGCATGGCTGTGCAACGCGTCGAGAAGGCA
TTACAATACGCCTATCGGGACCGGAAGGTGAAGAAGCGCGAGTTCCGCTC
CATATGGATTCAGCGCATTGGCGCCGCCGTCCAACAGTACGGCATGAACT
ACTCAAGATTCATCCCTGGGTTGAAACGTGCCAACATTACGCTCAACCGC
AAAGTGCTTGCCGATATGGCTGTGACAGAGCCGTACTCTTTCAAGGCAGT
GGTGGAGACGGTGCGTAGCCAGTGATGAGAAGTGAAAGAGGGGGTGTACA
AAAGAAAGAAAAAAATGGCTACAAGAC

protein sequence of jgi.p|Nanoce1779_2|583749

>mRNA_2902-protein ID=mRNA_2902-protein|Name=jgi.p|Nanoce1779_2|583749|organism=Nannochloropsis oceanica|type=polypeptide|length=159bp
MAPSWLGILSLRRATAALSVHAQILPSITINTSTLSLLSPLSAPFMQQSR
GLANHRHKKIIKMAKGYRGRTNCFRMAVQRVEKALQYAYRDRKVKKREFR
SIWIQRIGAAVQQYGMNYSRFIPGLKRANITLNRKVLADMAVTEPYSFKA
VVETVRSQ*

mRNA from alignment at scaffold_7:205143..206019+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2902 ID=mRNA_2902|Name=jgi.p|Nanoce1779_2|583749|organism=Nannochloropsis oceanica|type=mRNA|length=877bp|location=Sequence derived from alignment at scaffold_7:205143..206019+ (Nannochloropsis oceanica)
ATTTCAAGAAGGGATAGAGAAAAATGAGAGAAAGGCTACCTTGTTCCAAA
GAAAGTATCTGTGTCTAAATGTTCACGTACTATTCCCTTTTGTCTTGGAC
TTATTCAAAAACTTTTGGATTTCGCAACCGGCCGACGCAGGAGGTTCACC
GTCGCCATCGCCCACCAGCTCAAGCGGATGAGCGATAGCGAGTGGCCTTC
ATATCCTGCCCTTATGACTATACTCACGCCACACCACAGCAATAGTTCCA
TGGCTACCTCTTGTTCTTGGCTTTAACATATTATCGCACGCTCTCTCCGT
TCGCTAACCACCATCCTCCCCTTTTCCCCGAGAAGACGCATCATCACCAT
GGCCCCGTCTTGGCTGGGCATCCTCTCCTTGCGACGCGCCACCGCGGCCC
TCTCTGTCCATGCACAGATCCTCCCCAGCATCACTATCAACACAAGCACC
CTTTCCTTGCTGTCTCCGCTGTCCGCCCCATTCATGCAGCAGTCCCGTGG
GCTTGCCAATCACCGGCACAAGAAAATCATCAAAATGGCGAAGGGCTACC
GTGGCCGTACCAACTGCTTCCGCATGGCTGTGCAACGCGTCGAGAAGGCA
TTACAATACGCCTATCGGGACCGGAAGGTGAAGAAGCGCGAGTTCCGCTC
CATATGGATTCAGCGCATTGGCGCCGCCGTCCAACAGTACGGCATGAACT
ACTCAAGATTCATCCCTGGGTTGAAACGTGCCAACATTACGCTCAACCGC
AAAGTGCTTGCCGATATGGCTGTGACAGAGCCGTACTCTTTCAAGGCAGT
GGTGGAGACGGTGCGTAGCCAGTGATGAGAAGTGAAAGAGGGGGTGTACA
AAAGAAAGAAAAAAATGGCTACAAGAC

Coding sequence (CDS) from alignment at scaffold_7:205143..206019+

>mRNA_2902 ID=mRNA_2902|Name=jgi.p|Nanoce1779_2|583749|organism=Nannochloropsis oceanica|type=CDS|length=477bp|location=Sequence derived from alignment at scaffold_7:205143..206019+ (Nannochloropsis oceanica)
ATGGCCCCGTCTTGGCTGGGCATCCTCTCCTTGCGACGCGCCACCGCGGC
CCTCTCTGTCCATGCACAGATCCTCCCCAGCATCACTATCAACACAAGCA
CCCTTTCCTTGCTGTCTCCGCTGTCCGCCCCATTCATGCAGCAGTCCCGT
GGGCTTGCCAATCACCGGCACAAGAAAATCATCAAAATGGCGAAGGGCTA
CCGTGGCCGTACCAACTGCTTCCGCATGGCTGTGCAACGCGTCGAGAAGG
CATTACAATACGCCTATCGGGACCGGAAGGTGAAGAAGCGCGAGTTCCGC
TCCATATGGATTCAGCGCATTGGCGCCGCCGTCCAACAGTACGGCATGAA
CTACTCAAGATTCATCCCTGGGTTGAAACGTGCCAACATTACGCTCAACC
GCAAAGTGCTTGCCGATATGGCTGTGACAGAGCCGTACTCTTTCAAGGCA
GTGGTGGAGACGGTGCGTAGCCAGTGA

Synonyms

Publications