jgi.p|Nanoce1779_2|583748, mRNA_2901 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|583748
Unique NamemRNA_2901
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1241
Alignment locationscaffold_7:203916..205156 +

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Properties
Property NameValue
TranscriptId583834
TrackFilteredModels2
ProteinId583748
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_7supercontigscaffold_7:203916..205156 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583748gene_2901Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|583748mRNA_2901-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2901CDS_2901Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2901 ID=mRNA_2901|Name=jgi.p|Nanoce1779_2|583748|organism=Nannochloropsis oceanica|type=mRNA|length=1241bp
ACAGTCAGAGACCTTCCGATCAACGTCTTCTCTCACAGCGGCTATTCCTG
CTTCCACCCATCCGCCCGGCCGCCCATGGCAAGAAGCTAGCATCATCACC
TCGACCCTGCCTGGATAGGTGTAAACCCCATCTACCAACACATCCACCGG
ACCAGCGCAATATGTCATCCGCCGTTGTCCTGGCTACGGCAGGCTACGAC
CACAAGATTCGGTTTTGGGAGGCTCCAACAGGGGTCTGTTCCCGCTCCAT
CCGCTACCCCGACTCGCAAGTTAATTGTCTCCAAATCACCCCTGACAAGC
AGTTCCTGGTGGCTGGAGGCAACCCCCACGTCCGCCTTTTCGAAGTAGGC
GGCAATGCCAACCCGAATCCAGTGATGAGCTATGAAGGCCACGCGGGGAA
TGTTATGGCTGTGGGCTTCCAGCAAGAAGGCAAGTGGCTGTACACGGCAT
CGGAGGACGGGACGGTCAAGGTGTGGGACATTCGGGCGCCTGGGTGCCAG
CGGAGCTTTGACAATGTGGCCGCCGCCACGGCCATCCCCAATAGCAGCAA
AAATAGTGGAAGTTCATCTGCAGGAGGAGGACATCCGCACGCACCGCTGG
TGGCAGTGAACTCAGTTGTGCTTCATCCCAATCAAGCGGAAGTGGTGACG
GGGGATCAAGAAGGGCGTGTCCGCGTCTGGGACTTGGGCAGCAACCGTTG
TGTGCACGAGACACAACCTGAAGGGAATGTGCCCGTCCGTTCCGTTTCGG
TGTCGAATGATGCTTCGCTGATAGCAGCGGGGAACAACGAAGCGCACTTG
TATGTGTGGCGGCCGCAGGAAGGCACTGCAGAGGGGTATTTTGCCCGGCC
CGTTCACGCGCAGCCCGTGAAAACTCATGCCAGATACTTGCTGAAATGTG
CGTTTTCTCCCGATTCTCAGCGCTTGGTCACGACGTCGGCGGACAAGACG
GCCAAGCTTTGGAATGTGGCAAAGTGGGAGATGGAGCACACATTGAAAGA
CCATCAACGCTGGGTGTGGGATGCCGCCTTCTCGGCGGACTCATCCTATT
TGGTCACGGCTTGCTCGGACCACCACCCGCGACTATGGGACTTGCGAACA
GGCGACCTGGTTAGAACATACCAAGGCTCGAATCTGGCGGTGACGTGCGT
TGCGCTCAACGATGCGCAGACGTAGACTTAGTGGGGGGGGGTTAGCTGGG
GAGGGGAAGCTTGGGGTGATCTATAAAATTTCAAGAAGGGA
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protein sequence of jgi.p|Nanoce1779_2|583748

>mRNA_2901-protein ID=mRNA_2901-protein|Name=jgi.p|Nanoce1779_2|583748|organism=Nannochloropsis oceanica|type=polypeptide|length=338bp
MSSAVVLATAGYDHKIRFWEAPTGVCSRSIRYPDSQVNCLQITPDKQFLV
AGGNPHVRLFEVGGNANPNPVMSYEGHAGNVMAVGFQQEGKWLYTASEDG
TVKVWDIRAPGCQRSFDNVAAATAIPNSSKNSGSSSAGGGHPHAPLVAVN
SVVLHPNQAEVVTGDQEGRVRVWDLGSNRCVHETQPEGNVPVRSVSVSND
ASLIAAGNNEAHLYVWRPQEGTAEGYFARPVHAQPVKTHARYLLKCAFSP
DSQRLVTTSADKTAKLWNVAKWEMEHTLKDHQRWVWDAAFSADSSYLVTA
CSDHHPRLWDLRTGDLVRTYQGSNLAVTCVALNDAQT*
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mRNA from alignment at scaffold_7:203916..205156+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2901 ID=mRNA_2901|Name=jgi.p|Nanoce1779_2|583748|organism=Nannochloropsis oceanica|type=mRNA|length=1241bp|location=Sequence derived from alignment at scaffold_7:203916..205156+ (Nannochloropsis oceanica)
ACAGTCAGAGACCTTCCGATCAACGTCTTCTCTCACAGCGGCTATTCCTG
CTTCCACCCATCCGCCCGGCCGCCCATGGCAAGAAGCTAGCATCATCACC
TCGACCCTGCCTGGATAGGTGTAAACCCCATCTACCAACACATCCACCGG
ACCAGCGCAATATGTCATCCGCCGTTGTCCTGGCTACGGCAGGCTACGAC
CACAAGATTCGGTTTTGGGAGGCTCCAACAGGGGTCTGTTCCCGCTCCAT
CCGCTACCCCGACTCGCAAGTTAATTGTCTCCAAATCACCCCTGACAAGC
AGTTCCTGGTGGCTGGAGGCAACCCCCACGTCCGCCTTTTCGAAGTAGGC
GGCAATGCCAACCCGAATCCAGTGATGAGCTATGAAGGCCACGCGGGGAA
TGTTATGGCTGTGGGCTTCCAGCAAGAAGGCAAGTGGCTGTACACGGCAT
CGGAGGACGGGACGGTCAAGGTGTGGGACATTCGGGCGCCTGGGTGCCAG
CGGAGCTTTGACAATGTGGCCGCCGCCACGGCCATCCCCAATAGCAGCAA
AAATAGTGGAAGTTCATCTGCAGGAGGAGGACATCCGCACGCACCGCTGG
TGGCAGTGAACTCAGTTGTGCTTCATCCCAATCAAGCGGAAGTGGTGACG
GGGGATCAAGAAGGGCGTGTCCGCGTCTGGGACTTGGGCAGCAACCGTTG
TGTGCACGAGACACAACCTGAAGGGAATGTGCCCGTCCGTTCCGTTTCGG
TGTCGAATGATGCTTCGCTGATAGCAGCGGGGAACAACGAAGCGCACTTG
TATGTGTGGCGGCCGCAGGAAGGCACTGCAGAGGGGTATTTTGCCCGGCC
CGTTCACGCGCAGCCCGTGAAAACTCATGCCAGATACTTGCTGAAATGTG
CGTTTTCTCCCGATTCTCAGCGCTTGGTCACGACGTCGGCGGACAAGACG
GCCAAGCTTTGGAATGTGGCAAAGTGGGAGATGGAGCACACATTGAAAGA
CCATCAACGCTGGGTGTGGGATGCCGCCTTCTCGGCGGACTCATCCTATT
TGGTCACGGCTTGCTCGGACCACCACCCGCGACTATGGGACTTGCGAACA
GGCGACCTGGTTAGAACATACCAAGGCTCGAATCTGGCGGTGACGTGCGT
TGCGCTCAACGATGCGCAGACGTAGACTTAGTGGGGGGGGGTTAGCTGGG
GAGGGGAAGCTTGGGGTGATCTATAAAATTTCAAGAAGGGA
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Coding sequence (CDS) from alignment at scaffold_7:203916..205156+

>mRNA_2901 ID=mRNA_2901|Name=jgi.p|Nanoce1779_2|583748|organism=Nannochloropsis oceanica|type=CDS|length=1014bp|location=Sequence derived from alignment at scaffold_7:203916..205156+ (Nannochloropsis oceanica)
ATGTCATCCGCCGTTGTCCTGGCTACGGCAGGCTACGACCACAAGATTCG
GTTTTGGGAGGCTCCAACAGGGGTCTGTTCCCGCTCCATCCGCTACCCCG
ACTCGCAAGTTAATTGTCTCCAAATCACCCCTGACAAGCAGTTCCTGGTG
GCTGGAGGCAACCCCCACGTCCGCCTTTTCGAAGTAGGCGGCAATGCCAA
CCCGAATCCAGTGATGAGCTATGAAGGCCACGCGGGGAATGTTATGGCTG
TGGGCTTCCAGCAAGAAGGCAAGTGGCTGTACACGGCATCGGAGGACGGG
ACGGTCAAGGTGTGGGACATTCGGGCGCCTGGGTGCCAGCGGAGCTTTGA
CAATGTGGCCGCCGCCACGGCCATCCCCAATAGCAGCAAAAATAGTGGAA
GTTCATCTGCAGGAGGAGGACATCCGCACGCACCGCTGGTGGCAGTGAAC
TCAGTTGTGCTTCATCCCAATCAAGCGGAAGTGGTGACGGGGGATCAAGA
AGGGCGTGTCCGCGTCTGGGACTTGGGCAGCAACCGTTGTGTGCACGAGA
CACAACCTGAAGGGAATGTGCCCGTCCGTTCCGTTTCGGTGTCGAATGAT
GCTTCGCTGATAGCAGCGGGGAACAACGAAGCGCACTTGTATGTGTGGCG
GCCGCAGGAAGGCACTGCAGAGGGGTATTTTGCCCGGCCCGTTCACGCGC
AGCCCGTGAAAACTCATGCCAGATACTTGCTGAAATGTGCGTTTTCTCCC
GATTCTCAGCGCTTGGTCACGACGTCGGCGGACAAGACGGCCAAGCTTTG
GAATGTGGCAAAGTGGGAGATGGAGCACACATTGAAAGACCATCAACGCT
GGGTGTGGGATGCCGCCTTCTCGGCGGACTCATCCTATTTGGTCACGGCT
TGCTCGGACCACCACCCGCGACTATGGGACTTGCGAACAGGCGACCTGGT
TAGAACATACCAAGGCTCGAATCTGGCGGTGACGTGCGTTGCGCTCAACG
ATGCGCAGACGTAG
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Synonyms
Publications